Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC3.04□□□□□ -1.92
HOXC9P31274 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC3.04□□□□□ -1.92
HOXC9P31274 RNU6-270P-201ENST00000364131 105 ntBASIC3.04□□□□□ -1.92
HOXC9P31274 Y_RNA.402-201ENST00000383972 102 ntBASIC3.04□□□□□ -1.92
HOXC9P31274 RNU6-217P-201ENST00000384164 104 ntBASIC3.04□□□□□ -1.92
HOXC9P31274 Y_RNA.450-201ENST00000384198 113 ntBASIC3.04□□□□□ -1.92
HOXC9P31274 SNORA64-201ENST00000384674 134 ntBASIC3.04□□□□□ -1.92
HOXC9P31274 RNA5SP252-201ENST00000391131 119 ntBASIC3.04□□□□□ -1.92
HOXC9P31274 AC009480.1-201ENST00000402410 412 ntTSL 3 BASIC3.04□□□□□ -1.92
HOXC9P31274 RNU2-68P-201ENST00000410878 191 ntBASIC3.04□□□□□ -1.92
HOXC9P31274 AC099548.1-201ENST00000421443 426 ntBASIC3.04□□□□□ -1.92
HOXC9P31274 MTCO1P20-201ENST00000425366 358 ntBASIC3.04□□□□□ -1.92
HOXC9P31274 TRIAP1P1-201ENST00000427062 225 ntBASIC3.04□□□□□ -1.92
HOXC9P31274 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC3.04□□□□□ -1.92
HOXC9P31274 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC3.04□□□□□ -1.92
HOXC9P31274 AC015983.2-201ENST00000446053 472 ntTSL 3 BASIC3.04□□□□□ -1.92
HOXC9P31274 AC104058.1-201ENST00000448028 297 ntBASIC3.04□□□□□ -1.92
HOXC9P31274 AC092567.1-201ENST00000452397 251 ntTSL 3 BASIC3.04□□□□□ -1.92
HOXC9P31274 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC3.04□□□□□ -1.92
HOXC9P31274 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC3.04□□□□□ -1.92
HOXC9P31274 GMFBP1-201ENST00000467831 427 ntBASIC3.04□□□□□ -1.92
HOXC9P31274 AC104472.2-201ENST00000469035 601 ntBASIC3.04□□□□□ -1.92
HOXC9P31274 AC006483.1-201ENST00000487308 313 ntBASIC3.04□□□□□ -1.92
HOXC9P31274 AC139453.3-201ENST00000493276 369 ntBASIC3.04□□□□□ -1.92
HOXC9P31274 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC3.04□□□□□ -1.92
HOXC9P31274 AC109927.2-201ENST00000506416 303 ntBASIC3.04□□□□□ -1.92
HOXC9P31274 RNA5SP401-201ENST00000515920 127 ntBASIC3.04□□□□□ -1.92
HOXC9P31274 RN7SKP219-201ENST00000516825 296 ntBASIC3.04□□□□□ -1.92
HOXC9P31274 RNU6-685P-201ENST00000517088 95 ntBASIC3.04□□□□□ -1.92
HOXC9P31274 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC3.04□□□□□ -1.92
HOXC9P31274 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC3.04□□□□□ -1.92
HOXC9P31274 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC3.04□□□□□ -1.92
HOXC9P31274 AMZ2P1-203ENST00000565833 850 ntBASIC3.04□□□□□ -1.92
HOXC9P31274 AC068135.2-201ENST00000569293 1028 ntBASIC3.04□□□□□ -1.92
HOXC9P31274 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
HOXC9P31274 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC3.04□□□□□ -1.92
HOXC9P31274 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC3.04□□□□□ -1.92
HOXC9P31274 AC023043.3-201ENST00000593113 385 ntBASIC3.04□□□□□ -1.92
HOXC9P31274 AL138889.2-201ENST00000603883 242 ntBASIC3.04□□□□□ -1.92
HOXC9P31274 AC024940.5-201ENST00000622889 474 ntBASIC3.04□□□□□ -1.92
HOXC9P31274 PSMD5-AS1-215ENST00000640622 205 ntBASIC3.04□□□□□ -1.92
HOXC9P31274 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC3.04□□□□□ -1.92
HOXC9P31274 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
HOXC9P31274 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC3.03□□□□□ -1.92
HOXC9P31274 RNU6-552P-201ENST00000362869 119 ntBASIC3.03□□□□□ -1.92
HOXC9P31274 Y_RNA.255-201ENST00000364581 97 ntBASIC3.03□□□□□ -1.92
HOXC9P31274 SNORA14A-201ENST00000364773 135 ntBASIC3.03□□□□□ -1.92
HOXC9P31274 MIR221-201ENST00000385135 110 ntBASIC3.03□□□□□ -1.92
HOXC9P31274 MIR301A-201ENST00000385261 86 ntBASIC3.03□□□□□ -1.92
HOXC9P31274 USP9YP18-201ENST00000425912 695 ntBASIC3.03□□□□□ -1.92
HOXC9P31274 CALM2P2-201ENST00000428512 440 ntBASIC3.03□□□□□ -1.92
HOXC9P31274 AC092427.1-202ENST00000430569 476 ntBASIC3.03□□□□□ -1.92
HOXC9P31274 Z98742.2-201ENST00000431564 187 ntBASIC3.03□□□□□ -1.92
HOXC9P31274 AL603839.2-201ENST00000437060 546 ntTSL 5 BASIC3.03□□□□□ -1.92
HOXC9P31274 AL157882.1-201ENST00000447148 429 ntTSL 3 BASIC3.03□□□□□ -1.92
HOXC9P31274 AC073415.1-201ENST00000449240 153 ntBASIC3.03□□□□□ -1.92
HOXC9P31274 LINC00395-202ENST00000451570 415 ntTSL 3 BASIC3.03□□□□□ -1.92
HOXC9P31274 AL163973.1-201ENST00000484753 577 ntBASIC3.03□□□□□ -1.92
HOXC9P31274 EIF4EP3-201ENST00000498782 656 ntBASIC3.03□□□□□ -1.92
HOXC9P31274 AC105417.1-201ENST00000514691 285 ntBASIC3.03□□□□□ -1.92
HOXC9P31274 RNU6-1315P-201ENST00000517187 99 ntBASIC3.03□□□□□ -1.92
HOXC9P31274 AC104211.3-201ENST00000518861 270 ntTSL 3 BASIC3.03□□□□□ -1.92
HOXC9P31274 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC3.03□□□□□ -1.92
HOXC9P31274 MTND1P35-201ENST00000526739 508 ntBASIC3.03□□□□□ -1.92
HOXC9P31274 AP005435.4-201ENST00000529514 284 ntBASIC3.03□□□□□ -1.92
HOXC9P31274 HIF1AP1-201ENST00000553642 175 ntBASIC3.03□□□□□ -1.92
HOXC9P31274 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC3.03□□□□□ -1.92
HOXC9P31274 AL157687.1-201ENST00000554853 619 ntBASIC3.03□□□□□ -1.92
HOXC9P31274 TTN-AS1-212ENST00000582847 1036 ntTSL 5 BASIC3.03□□□□□ -1.92
HOXC9P31274 AC005357.2-201ENST00000586473 583 ntTSL 2 BASIC3.03□□□□□ -1.92
HOXC9P31274 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC3.03□□□□□ -1.92
HOXC9P31274 FTX_3.1-201ENST00000610451 147 ntBASIC3.03□□□□□ -1.92
HOXC9P31274 C8orf59-208ENST00000612809 475 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
HOXC9P31274 YWHAEP7-203ENST00000622054 312 ntBASIC3.03□□□□□ -1.92
HOXC9P31274 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC3.02□□□□□ -1.93
HOXC9P31274 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC3.02□□□□□ -1.93
HOXC9P31274 AL354685.2-201ENST00000448218 1447 ntBASIC3.02□□□□□ -1.93
HOXC9P31274 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC3.02□□□□□ -1.93
HOXC9P31274 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC3.02□□□□□ -1.93
HOXC9P31274 RNU6-884P-201ENST00000363889 107 ntBASIC3.02□□□□□ -1.93
HOXC9P31274 Y_RNA.453-201ENST00000384223 109 ntBASIC3.02□□□□□ -1.93
HOXC9P31274 RNU6-903P-201ENST00000391270 109 ntBASIC3.02□□□□□ -1.93
HOXC9P31274 RN7SKP32-201ENST00000410167 303 ntBASIC3.02□□□□□ -1.93
HOXC9P31274 RNU2-29P-201ENST00000410423 189 ntBASIC3.02□□□□□ -1.93
HOXC9P31274 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC3.02□□□□□ -1.93
HOXC9P31274 AL591806.2-201ENST00000433122 173 ntBASIC3.02□□□□□ -1.93
HOXC9P31274 AC000111.3-201ENST00000433478 193 ntBASIC3.02□□□□□ -1.93
HOXC9P31274 AC010099.1-201ENST00000455434 375 ntBASIC3.02□□□□□ -1.93
HOXC9P31274 AL160162.1-201ENST00000456715 442 ntTSL 3 BASIC3.02□□□□□ -1.93
HOXC9P31274 AL031183.1-201ENST00000457667 207 ntBASIC3.02□□□□□ -1.93
HOXC9P31274 SNRPFP3-201ENST00000457792 225 ntBASIC3.02□□□□□ -1.93
HOXC9P31274 Y_RNA.638-201ENST00000459374 113 ntBASIC3.02□□□□□ -1.93
HOXC9P31274 RNU6-261P-201ENST00000459506 102 ntBASIC3.02□□□□□ -1.93
HOXC9P31274 LINC01326-201ENST00000495159 755 ntTSL 2 BASIC3.02□□□□□ -1.93
HOXC9P31274 SMAD1-AS2-201ENST00000508936 1090 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
HOXC9P31274 LINC02546-202ENST00000528119 801 ntTSL 5 BASIC3.02□□□□□ -1.93
HOXC9P31274 AC109635.3-201ENST00000529536 185 ntBASIC3.02□□□□□ -1.93
HOXC9P31274 ELOCP31-201ENST00000540463 467 ntBASIC3.02□□□□□ -1.93
HOXC9P31274 HMGB1P14-201ENST00000557424 591 ntBASIC3.02□□□□□ -1.93
HOXC9P31274 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC3.02□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 104 ms