Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 RNU6-116P-201ENST00000384042 109 ntBASIC2.79□□□□□ -1.96
BDNFP23560 RNU2-23P-201ENST00000410545 195 ntBASIC2.79□□□□□ -1.96
BDNFP23560 LINC01312-201ENST00000412745 775 ntTSL 3 BASIC2.79□□□□□ -1.96
BDNFP23560 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC2.79□□□□□ -1.96
BDNFP23560 EDDM3CP-201ENST00000415977 425 ntBASIC2.79□□□□□ -1.96
BDNFP23560 AC074117.2-201ENST00000417130 397 ntBASIC2.79□□□□□ -1.96
BDNFP23560 MTND2P18-201ENST00000419962 1030 ntBASIC2.79□□□□□ -1.96
BDNFP23560 AC009299.3-201ENST00000421122 1072 ntTSL 3 BASIC2.79□□□□□ -1.96
BDNFP23560 PGBD4P6-201ENST00000421501 610 ntBASIC2.79□□□□□ -1.96
BDNFP23560 LINC01040-201ENST00000425048 666 ntTSL 2 BASIC2.79□□□□□ -1.96
BDNFP23560 AC020571.1-201ENST00000430904 768 ntTSL 2 BASIC2.79□□□□□ -1.96
BDNFP23560 HMGB1P31-201ENST00000437242 427 ntBASIC2.79□□□□□ -1.96
BDNFP23560 AL445567.1-201ENST00000439121 144 ntBASIC2.79□□□□□ -1.96
BDNFP23560 LINC01828-202ENST00000450294 955 ntTSL 5 BASIC2.79□□□□□ -1.96
BDNFP23560 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC2.79□□□□□ -1.96
BDNFP23560 LINC02077-201ENST00000465795 409 ntTSL 3 BASIC2.79□□□□□ -1.96
BDNFP23560 AC092666.1-201ENST00000492054 573 ntTSL 4 BASIC2.79□□□□□ -1.96
BDNFP23560 AC117460.1-201ENST00000508964 467 ntTSL 3 BASIC2.79□□□□□ -1.96
BDNFP23560 AC091965.2-201ENST00000512324 613 ntBASIC2.79□□□□□ -1.96
BDNFP23560 AC074344.1-201ENST00000512823 224 ntBASIC2.79□□□□□ -1.96
BDNFP23560 RNU4-29P-201ENST00000515943 174 ntBASIC2.79□□□□□ -1.96
BDNFP23560 RNU7-193P-201ENST00000516723 65 ntBASIC2.79□□□□□ -1.96
BDNFP23560 RNA5SP137-201ENST00000516833 135 ntBASIC2.79□□□□□ -1.96
BDNFP23560 RNU6-1220P-201ENST00000517126 108 ntBASIC2.79□□□□□ -1.96
BDNFP23560 ZNF84-205ENST00000535439 647 ntTSL 5 BASIC2.79□□□□□ -1.96
BDNFP23560 AC135279.1-201ENST00000543493 504 ntBASIC2.79□□□□□ -1.96
BDNFP23560 IMMP1LP2-201ENST00000552954 492 ntBASIC2.79□□□□□ -1.96
BDNFP23560 AC016987.2-201ENST00000560696 351 ntTSL 3 BASIC2.79□□□□□ -1.96
BDNFP23560 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC2.79□□□□□ -1.96
BDNFP23560 MTCYBP33-201ENST00000575007 1130 ntBASIC2.79□□□□□ -1.96
BDNFP23560 AC044840.1-201ENST00000577641 472 ntTSL 3 BASIC2.79□□□□□ -1.96
BDNFP23560 AC090897.2-201ENST00000581715 130 ntBASIC2.79□□□□□ -1.96
BDNFP23560 AC068790.2-201ENST00000602601 557 ntBASIC2.79□□□□□ -1.96
BDNFP23560 MIR6895-201ENST00000613497 78 ntBASIC2.79□□□□□ -1.96
BDNFP23560 RGS13-204ENST00000543215 1518 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
BDNFP23560 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC2.78□□□□□ -1.96
BDNFP23560 MIR449A-201ENST00000362113 91 ntBASIC2.78□□□□□ -1.96
BDNFP23560 RNU6-1210P-201ENST00000363775 107 ntBASIC2.78□□□□□ -1.96
BDNFP23560 RNU5E-7P-201ENST00000365290 117 ntBASIC2.78□□□□□ -1.96
BDNFP23560 AL031779.1-201ENST00000415663 330 ntBASIC2.78□□□□□ -1.96
BDNFP23560 PIGFP2-201ENST00000421400 651 ntBASIC2.78□□□□□ -1.96
BDNFP23560 AL136234.1-201ENST00000437080 349 ntTSL 2 BASIC2.78□□□□□ -1.96
BDNFP23560 RPS27AP9-201ENST00000477681 438 ntBASIC2.78□□□□□ -1.96
BDNFP23560 RNA5SP503-201ENST00000517047 117 ntBASIC2.78□□□□□ -1.96
BDNFP23560 AC103957.1-202ENST00000519814 735 ntTSL 3 BASIC2.78□□□□□ -1.96
BDNFP23560 EMP1-206ENST00000537612 505 ntTSL 3 BASIC2.78□□□□□ -1.96
BDNFP23560 AP000462.3-201ENST00000545593 330 ntTSL 5 BASIC2.78□□□□□ -1.96
BDNFP23560 AC007229.1-201ENST00000590455 412 ntBASIC2.78□□□□□ -1.96
BDNFP23560 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
BDNFP23560 CR381653.2-201ENST00000624041 768 ntBASIC2.78□□□□□ -1.96
BDNFP23560 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
BDNFP23560 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC2.77□□□□□ -1.97
BDNFP23560 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC2.77□□□□□ -1.97
BDNFP23560 GSTA3-201ENST00000211122 902 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
BDNFP23560 Y_RNA.201-201ENST00000364052 96 ntBASIC2.77□□□□□ -1.97
BDNFP23560 RNU6-384P-201ENST00000364900 104 ntBASIC2.77□□□□□ -1.97
BDNFP23560 SNORA25B-201ENST00000365507 128 ntBASIC2.77□□□□□ -1.97
BDNFP23560 BCL2L15-203ENST00000393320 276 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
BDNFP23560 AL355497.1-201ENST00000406262 551 ntBASIC2.77□□□□□ -1.97
BDNFP23560 RNU4-46P-201ENST00000410818 138 ntBASIC2.77□□□□□ -1.97
BDNFP23560 RPLP0P7-201ENST00000416050 667 ntBASIC2.77□□□□□ -1.97
BDNFP23560 AIMP1P2-201ENST00000425294 312 ntBASIC2.77□□□□□ -1.97
BDNFP23560 AC133104.1-201ENST00000429100 218 ntBASIC2.77□□□□□ -1.97
BDNFP23560 RPL31P35-201ENST00000431058 377 ntBASIC2.77□□□□□ -1.97
BDNFP23560 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC2.77□□□□□ -1.97
BDNFP23560 AP000705.1-201ENST00000454567 350 ntBASIC2.77□□□□□ -1.97
BDNFP23560 AC027673.1-201ENST00000456245 405 ntBASIC2.77□□□□□ -1.97
BDNFP23560 AC023794.1-201ENST00000504210 403 ntTSL 2 BASIC2.77□□□□□ -1.97
BDNFP23560 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC2.77□□□□□ -1.97
BDNFP23560 SNORA31.23-201ENST00000517219 133 ntBASIC2.77□□□□□ -1.97
BDNFP23560 IGLV3-17-201ENST00000519099 244 ntBASIC2.77□□□□□ -1.97
BDNFP23560 CKS1BP7-201ENST00000522230 235 ntBASIC2.77□□□□□ -1.97
BDNFP23560 AC064872.1-201ENST00000604823 1072 ntBASIC2.77□□□□□ -1.97
BDNFP23560 AC008945.2-201ENST00000606056 604 ntBASIC2.77□□□□□ -1.97
BDNFP23560 AL512625.3-207ENST00000609749 477 ntTSL 3 BASIC2.77□□□□□ -1.97
BDNFP23560 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC2.77□□□□□ -1.97
BDNFP23560 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC2.76□□□□□ -1.97
BDNFP23560 SNORD62.1-201ENST00000362541 86 ntBASIC2.76□□□□□ -1.97
BDNFP23560 RNA5SP68-201ENST00000363885 119 ntBASIC2.76□□□□□ -1.97
BDNFP23560 SNORA62.1-201ENST00000364287 154 ntBASIC2.76□□□□□ -1.97
BDNFP23560 FGFR1OP2P1-201ENST00000395943 500 ntBASIC2.76□□□□□ -1.97
BDNFP23560 HNRNPDLP1-201ENST00000412834 550 ntBASIC2.76□□□□□ -1.97
BDNFP23560 AL663023.1-201ENST00000412932 853 ntTSL 3 BASIC2.76□□□□□ -1.97
BDNFP23560 AC008267.5-201ENST00000424928 265 ntBASIC2.76□□□□□ -1.97
BDNFP23560 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC2.76□□□□□ -1.97
BDNFP23560 AL589986.2-201ENST00000429352 397 ntTSL 2 BASIC2.76□□□□□ -1.97
BDNFP23560 AL591043.1-201ENST00000432461 424 ntBASIC2.76□□□□□ -1.97
BDNFP23560 PSPHP1-201ENST00000450062 261 ntBASIC2.76□□□□□ -1.97
BDNFP23560 AL589678.1-201ENST00000452685 561 ntTSL 3 BASIC2.76□□□□□ -1.97
BDNFP23560 snoU13.14-201ENST00000459372 104 ntBASIC2.76□□□□□ -1.97
BDNFP23560 GMFBP1-201ENST00000467831 427 ntBASIC2.76□□□□□ -1.97
BDNFP23560 RPL9P33-201ENST00000484311 566 ntBASIC2.76□□□□□ -1.97
BDNFP23560 RPL23AP49-201ENST00000492925 468 ntBASIC2.76□□□□□ -1.97
BDNFP23560 SNORD27.1-201ENST00000516319 72 ntBASIC2.76□□□□□ -1.97
BDNFP23560 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC2.76□□□□□ -1.97
BDNFP23560 AL442163.1-201ENST00000557251 515 ntTSL 5 BASIC2.76□□□□□ -1.97
BDNFP23560 CLIC4P2-201ENST00000601934 717 ntBASIC2.76□□□□□ -1.97
BDNFP23560 MIR6817-201ENST00000615588 66 ntBASIC2.76□□□□□ -1.97
BDNFP23560 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC2.76□□□□□ -1.97
BDNFP23560 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC2.76□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 106.3 ms