Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 RNU6-928P-201ENST00000516876 104 ntBASIC2.77□□□□□ -1.97
MSH3P20585 AC099554.1-201ENST00000520032 572 ntTSL 3 BASIC2.77□□□□□ -1.97
MSH3P20585 CENPUP1-201ENST00000526649 1202 ntBASIC2.77□□□□□ -1.97
MSH3P20585 OR11H5P-201ENST00000554039 926 ntBASIC2.77□□□□□ -1.97
MSH3P20585 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC2.77□□□□□ -1.97
MSH3P20585 AL157871.3-201ENST00000557231 293 ntBASIC2.77□□□□□ -1.97
MSH3P20585 LARP7P3-201ENST00000579888 337 ntBASIC2.77□□□□□ -1.97
MSH3P20585 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
MSH3P20585 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC2.77□□□□□ -1.97
MSH3P20585 MIR3605-201ENST00000583214 100 ntBASIC2.77□□□□□ -1.97
MSH3P20585 MIR548AC-201ENST00000585049 88 ntBASIC2.77□□□□□ -1.97
MSH3P20585 NUTF2P8-201ENST00000604593 363 ntBASIC2.77□□□□□ -1.97
MSH3P20585 FTX_3.1-201ENST00000610451 147 ntBASIC2.77□□□□□ -1.97
MSH3P20585 AP003400.5-201ENST00000624827 617 ntBASIC2.77□□□□□ -1.97
MSH3P20585 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC2.77□□□□□ -1.97
MSH3P20585 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC2.77□□□□□ -1.97
MSH3P20585 ANKRD18EP-201ENST00000405487 2632 ntBASIC2.76□□□□□ -1.97
MSH3P20585 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
MSH3P20585 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC2.76□□□□□ -1.97
MSH3P20585 MIR26A1-201ENST00000362205 77 ntBASIC2.76□□□□□ -1.97
MSH3P20585 Y_RNA.33-201ENST00000362591 102 ntBASIC2.76□□□□□ -1.97
MSH3P20585 Y_RNA.160-201ENST00000363677 92 ntBASIC2.76□□□□□ -1.97
MSH3P20585 Y_RNA.167-201ENST00000363735 109 ntBASIC2.76□□□□□ -1.97
MSH3P20585 Y_RNA.378-201ENST00000365652 113 ntBASIC2.76□□□□□ -1.97
MSH3P20585 SNORA75B-201ENST00000384053 137 ntBASIC2.76□□□□□ -1.97
MSH3P20585 RNU6-434P-201ENST00000384376 107 ntBASIC2.76□□□□□ -1.97
MSH3P20585 RNU6-45P-201ENST00000384471 107 ntBASIC2.76□□□□□ -1.97
MSH3P20585 RNU6-1035P-201ENST00000384477 107 ntBASIC2.76□□□□□ -1.97
MSH3P20585 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC2.76□□□□□ -1.97
MSH3P20585 MIR1289-1-201ENST00000408836 144 ntBASIC2.76□□□□□ -1.97
MSH3P20585 RNA5SP492-201ENST00000411330 114 ntBASIC2.76□□□□□ -1.97
MSH3P20585 RPL21P90-201ENST00000415692 466 ntBASIC2.76□□□□□ -1.97
MSH3P20585 RPL21P111-201ENST00000418453 477 ntBASIC2.76□□□□□ -1.97
MSH3P20585 AC107083.1-201ENST00000439643 279 ntBASIC2.76□□□□□ -1.97
MSH3P20585 MTND3P10-201ENST00000450967 341 ntBASIC2.76□□□□□ -1.97
MSH3P20585 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC2.76□□□□□ -1.97
MSH3P20585 RPL12P25-201ENST00000455592 494 ntBASIC2.76□□□□□ -1.97
MSH3P20585 RNU6-1208P-201ENST00000459588 107 ntBASIC2.76□□□□□ -1.97
MSH3P20585 AC022493.1-201ENST00000492984 337 ntBASIC2.76□□□□□ -1.97
MSH3P20585 AC091826.1-201ENST00000514065 313 ntBASIC2.76□□□□□ -1.97
MSH3P20585 RNU2-69P-201ENST00000516061 100 ntBASIC2.76□□□□□ -1.97
MSH3P20585 AC145141.2-201ENST00000518473 501 ntTSL 3 BASIC2.76□□□□□ -1.97
MSH3P20585 AC009902.1-201ENST00000519351 183 ntBASIC2.76□□□□□ -1.97
MSH3P20585 AC023050.3-201ENST00000541142 333 ntBASIC2.76□□□□□ -1.97
MSH3P20585 AL121579.1-201ENST00000555129 305 ntBASIC2.76□□□□□ -1.97
MSH3P20585 AC007948.1-201ENST00000581632 242 ntTSL 5 BASIC2.76□□□□□ -1.97
MSH3P20585 AC018638.8-201ENST00000588755 281 ntBASIC2.76□□□□□ -1.97
MSH3P20585 AC009033.1-201ENST00000624279 431 ntBASIC2.76□□□□□ -1.97
MSH3P20585 AC100810.6-201ENST00000638068 285 ntBASIC2.76□□□□□ -1.97
MSH3P20585 AC022336.2-201ENST00000568966 2538 ntBASIC2.76□□□□□ -1.97
MSH3P20585 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC2.75□□□□□ -1.97
MSH3P20585 PKIB-201ENST00000258014 1595 ntTSL 2 BASIC2.75□□□□□ -1.97
MSH3P20585 ANKRD36BP1-201ENST00000358576 1779 ntBASIC2.75□□□□□ -1.97
MSH3P20585 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
MSH3P20585 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
MSH3P20585 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
MSH3P20585 SNORA72.1-201ENST00000363485 129 ntBASIC2.75□□□□□ -1.97
MSH3P20585 U3.12-201ENST00000364498 214 ntBASIC2.75□□□□□ -1.97
MSH3P20585 Y_RNA.279-201ENST00000364763 95 ntBASIC2.75□□□□□ -1.97
MSH3P20585 RNU6-395P-201ENST00000365662 106 ntBASIC2.75□□□□□ -1.97
MSH3P20585 MDM4-202ENST00000367180 547 ntTSL 3 BASIC2.75□□□□□ -1.97
MSH3P20585 RNU4-26P-201ENST00000410270 107 ntBASIC2.75□□□□□ -1.97
MSH3P20585 RNU6-1025P-201ENST00000410629 104 ntBASIC2.75□□□□□ -1.97
MSH3P20585 RNU2-68P-201ENST00000410878 191 ntBASIC2.75□□□□□ -1.97
MSH3P20585 RPL19P1-201ENST00000411635 428 ntBASIC2.75□□□□□ -1.97
MSH3P20585 BX682237.1-201ENST00000415016 335 ntBASIC2.75□□□□□ -1.97
MSH3P20585 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC2.75□□□□□ -1.97
MSH3P20585 MYL8P-204ENST00000431574 518 ntBASIC2.75□□□□□ -1.97
MSH3P20585 RAB6C-AS1-202ENST00000433431 123 ntBASIC2.75□□□□□ -1.97
MSH3P20585 AP000936.1-201ENST00000442124 483 ntTSL 5 BASIC2.75□□□□□ -1.97
MSH3P20585 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC2.75□□□□□ -1.97
MSH3P20585 AP000852.1-201ENST00000472460 573 ntBASIC2.75□□□□□ -1.97
MSH3P20585 Y_RNA.654-201ENST00000497848 106 ntBASIC2.75□□□□□ -1.97
MSH3P20585 AC097462.2-201ENST00000504623 481 ntBASIC2.75□□□□□ -1.97
MSH3P20585 AC098799.2-201ENST00000509466 868 ntBASIC2.75□□□□□ -1.97
MSH3P20585 Y_RNA.665-201ENST00000516177 98 ntBASIC2.75□□□□□ -1.97
MSH3P20585 HSPE1P20-201ENST00000538133 289 ntBASIC2.75□□□□□ -1.97
MSH3P20585 CYCSP39-201ENST00000565821 309 ntBASIC2.75□□□□□ -1.97
MSH3P20585 AC106782.4-201ENST00000568264 210 ntBASIC2.75□□□□□ -1.97
MSH3P20585 MIR5692A1-201ENST00000580523 69 ntBASIC2.75□□□□□ -1.97
MSH3P20585 AC073539.2-201ENST00000597113 165 ntBASIC2.75□□□□□ -1.97
MSH3P20585 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC2.75□□□□□ -1.97
MSH3P20585 RPL23AP88-201ENST00000605759 454 ntBASIC2.75□□□□□ -1.97
MSH3P20585 AC092807.2-201ENST00000609367 243 ntBASIC2.75□□□□□ -1.97
MSH3P20585 MIR7106-201ENST00000612419 65 ntBASIC2.75□□□□□ -1.97
MSH3P20585 DUSP12P1-201ENST00000612874 516 ntBASIC2.75□□□□□ -1.97
MSH3P20585 AC092794.2-201ENST00000620933 563 ntBASIC2.75□□□□□ -1.97
MSH3P20585 AC022418.1-201ENST00000624118 445 ntBASIC2.75□□□□□ -1.97
MSH3P20585 AC090617.10-201ENST00000624308 134 ntBASIC2.75□□□□□ -1.97
MSH3P20585 FAM35BP-202ENST00000497389 3337 ntBASIC2.75□□□□□ -1.97
MSH3P20585 AP003122.5-201ENST00000527668 3766 ntBASIC2.75□□□□□ -1.97
MSH3P20585 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC2.75□□□□□ -1.97
MSH3P20585 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
MSH3P20585 Z82195.2-201ENST00000612348 18351 ntBASIC2.74□□□□□ -1.97
MSH3P20585 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC2.74□□□□□ -1.97
MSH3P20585 AL161431.1-201ENST00000618966 4205 ntBASIC2.74□□□□□ -1.97
MSH3P20585 Y_RNA.72-201ENST00000362894 103 ntBASIC2.74□□□□□ -1.97
MSH3P20585 RNU6-198P-201ENST00000384258 104 ntBASIC2.74□□□□□ -1.97
MSH3P20585 NDUFB4P4-201ENST00000404822 243 ntBASIC2.74□□□□□ -1.97
MSH3P20585 AL162578.1-201ENST00000406202 378 ntBASIC2.74□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 145.6 ms