Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 RNU6-56P-201ENST00000516986 93 ntBASIC2.94□□□□□ -1.94
LDLRP01130 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC2.94□□□□□ -1.94
LDLRP01130 AC020661.2-201ENST00000560114 134 ntBASIC2.94□□□□□ -1.94
LDLRP01130 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC2.94□□□□□ -1.94
LDLRP01130 MIR4775-201ENST00000581168 75 ntBASIC2.94□□□□□ -1.94
LDLRP01130 AC243960.4-201ENST00000600532 288 ntBASIC2.94□□□□□ -1.94
LDLRP01130 AC012119.1-201ENST00000603184 222 ntBASIC2.94□□□□□ -1.94
LDLRP01130 AC174048.1-201ENST00000603389 144 ntBASIC2.94□□□□□ -1.94
LDLRP01130 uc_338.25-201ENST00000613756 156 ntBASIC2.94□□□□□ -1.94
LDLRP01130 RMST_7.1-201ENST00000621935 268 ntBASIC2.94□□□□□ -1.94
LDLRP01130 Z99571.1-201ENST00000636677 394 ntBASIC2.94□□□□□ -1.94
LDLRP01130 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
LDLRP01130 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
LDLRP01130 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC2.94□□□□□ -1.94
LDLRP01130 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC2.94□□□□□ -1.94
LDLRP01130 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
LDLRP01130 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC2.93□□□□□ -1.94
LDLRP01130 RNU6-1287P-201ENST00000362914 107 ntBASIC2.93□□□□□ -1.94
LDLRP01130 Y_RNA.255-201ENST00000364581 97 ntBASIC2.93□□□□□ -1.94
LDLRP01130 IARS-201ENST00000375627 697 ntTSL 3 BASIC2.93□□□□□ -1.94
LDLRP01130 RNU6-1029P-201ENST00000384109 107 ntBASIC2.93□□□□□ -1.94
LDLRP01130 RNU6-1060P-201ENST00000384664 107 ntBASIC2.93□□□□□ -1.94
LDLRP01130 RNU6-606P-201ENST00000384721 111 ntBASIC2.93□□□□□ -1.94
LDLRP01130 AL645937.1-202ENST00000421799 937 ntBASIC2.93□□□□□ -1.94
LDLRP01130 AC092047.1-201ENST00000424997 240 ntBASIC2.93□□□□□ -1.94
LDLRP01130 RPS24P13-201ENST00000442520 397 ntBASIC2.93□□□□□ -1.94
LDLRP01130 NIPA2P5-201ENST00000452282 464 ntBASIC2.93□□□□□ -1.94
LDLRP01130 RPL12P25-201ENST00000455592 494 ntBASIC2.93□□□□□ -1.94
LDLRP01130 AL031183.1-201ENST00000457667 207 ntBASIC2.93□□□□□ -1.94
LDLRP01130 RNU7-63P-201ENST00000459054 62 ntBASIC2.93□□□□□ -1.94
LDLRP01130 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC2.93□□□□□ -1.94
LDLRP01130 SNORA19.2-201ENST00000516013 114 ntBASIC2.93□□□□□ -1.94
LDLRP01130 RNA5SP503-201ENST00000517047 117 ntBASIC2.93□□□□□ -1.94
LDLRP01130 BTF3P12-201ENST00000519620 469 ntBASIC2.93□□□□□ -1.94
LDLRP01130 AP000462.3-201ENST00000545593 330 ntTSL 5 BASIC2.93□□□□□ -1.94
LDLRP01130 HIGD1AP1-201ENST00000550979 275 ntBASIC2.93□□□□□ -1.94
LDLRP01130 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC2.93□□□□□ -1.94
LDLRP01130 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC2.93□□□□□ -1.94
LDLRP01130 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC2.93□□□□□ -1.94
LDLRP01130 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC2.93□□□□□ -1.94
LDLRP01130 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC2.93□□□□□ -1.94
LDLRP01130 MIR3609-201ENST00000582661 80 ntBASIC2.93□□□□□ -1.94
LDLRP01130 AC008521.1-201ENST00000587471 187 ntBASIC2.93□□□□□ -1.94
LDLRP01130 AL360085.1-201ENST00000604713 532 ntBASIC2.93□□□□□ -1.94
LDLRP01130 AC113139.1-201ENST00000605049 239 ntBASIC2.93□□□□□ -1.94
LDLRP01130 AC004805.2-201ENST00000605382 482 ntBASIC2.93□□□□□ -1.94
LDLRP01130 MIR15A-201ENST00000607334 83 ntBASIC2.93□□□□□ -1.94
LDLRP01130 AL359547.2-201ENST00000615810 418 ntBASIC2.93□□□□□ -1.94
LDLRP01130 AC011155.2-201ENST00000623202 216 ntBASIC2.93□□□□□ -1.94
LDLRP01130 AL512643.1-201ENST00000635735 524 ntBASIC2.93□□□□□ -1.94
LDLRP01130 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC2.93□□□□□ -1.94
LDLRP01130 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC2.93□□□□□ -1.94
LDLRP01130 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC2.93□□□□□ -1.94
LDLRP01130 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC2.93□□□□□ -1.94
LDLRP01130 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC2.93□□□□□ -1.94
LDLRP01130 MTND5P7-201ENST00000413558 1798 ntBASIC2.92□□□□□ -1.94
LDLRP01130 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
LDLRP01130 NACAP2-201ENST00000318548 624 ntBASIC2.92□□□□□ -1.94
LDLRP01130 SNORA4.3-201ENST00000365564 137 ntBASIC2.92□□□□□ -1.94
LDLRP01130 RNU4-20P-201ENST00000365601 151 ntBASIC2.92□□□□□ -1.94
LDLRP01130 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC2.92□□□□□ -1.94
LDLRP01130 AL139039.1-201ENST00000401900 692 ntBASIC2.92□□□□□ -1.94
LDLRP01130 Y_RNA.615-201ENST00000410769 117 ntBASIC2.92□□□□□ -1.94
LDLRP01130 MTND3P8-201ENST00000412909 339 ntBASIC2.92□□□□□ -1.94
LDLRP01130 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC2.92□□□□□ -1.94
LDLRP01130 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC2.92□□□□□ -1.94
LDLRP01130 AL353729.1-201ENST00000425044 720 ntBASIC2.92□□□□□ -1.94
LDLRP01130 LINC01817-201ENST00000429317 564 ntTSL 4 BASIC2.92□□□□□ -1.94
LDLRP01130 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC2.92□□□□□ -1.94
LDLRP01130 IFNA20P-201ENST00000436840 528 ntBASIC2.92□□□□□ -1.94
LDLRP01130 AC073415.1-201ENST00000449240 153 ntBASIC2.92□□□□□ -1.94
LDLRP01130 LINC00395-202ENST00000451570 415 ntTSL 3 BASIC2.92□□□□□ -1.94
LDLRP01130 AL356010.1-201ENST00000456364 102 ntBASIC2.92□□□□□ -1.94
LDLRP01130 Y_RNA.632-201ENST00000459189 102 ntBASIC2.92□□□□□ -1.94
LDLRP01130 snoU13.28-201ENST00000459235 104 ntBASIC2.92□□□□□ -1.94
LDLRP01130 RNU6-329P-201ENST00000459618 107 ntBASIC2.92□□□□□ -1.94
LDLRP01130 HMGN2P26-201ENST00000463169 339 ntBASIC2.92□□□□□ -1.94
LDLRP01130 AL163973.1-201ENST00000484753 577 ntBASIC2.92□□□□□ -1.94
LDLRP01130 RN7SL633P-201ENST00000488974 297 ntBASIC2.92□□□□□ -1.94
LDLRP01130 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC2.92□□□□□ -1.94
LDLRP01130 RPL38P4-201ENST00000502376 214 ntBASIC2.92□□□□□ -1.94
LDLRP01130 AC099520.1-202ENST00000503650 777 ntTSL 3 BASIC2.92□□□□□ -1.94
LDLRP01130 LINC01333-201ENST00000508083 724 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
LDLRP01130 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC2.92□□□□□ -1.94
LDLRP01130 LINC02103-201ENST00000512849 523 ntTSL 5 BASIC2.92□□□□□ -1.94
LDLRP01130 AC126768.3-201ENST00000514519 560 ntTSL 4 BASIC2.92□□□□□ -1.94
LDLRP01130 RNA5SP356-201ENST00000515972 94 ntBASIC2.92□□□□□ -1.94
LDLRP01130 RNU4-49P-201ENST00000516080 140 ntBASIC2.92□□□□□ -1.94
LDLRP01130 Y_RNA.691-201ENST00000516611 103 ntBASIC2.92□□□□□ -1.94
LDLRP01130 RNU6-914P-201ENST00000516749 109 ntBASIC2.92□□□□□ -1.94
LDLRP01130 RNU6-1314P-201ENST00000517139 104 ntBASIC2.92□□□□□ -1.94
LDLRP01130 RNA5SP165-201ENST00000517142 115 ntBASIC2.92□□□□□ -1.94
LDLRP01130 UTP23-205ENST00000520733 369 ntTSL 3 BASIC2.92□□□□□ -1.94
LDLRP01130 RANP3-201ENST00000530970 276 ntBASIC2.92□□□□□ -1.94
LDLRP01130 AC087241.2-201ENST00000535801 324 ntBASIC2.92□□□□□ -1.94
LDLRP01130 PSMA3P-201ENST00000555485 635 ntBASIC2.92□□□□□ -1.94
LDLRP01130 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC2.92□□□□□ -1.94
LDLRP01130 MIR4742-201ENST00000581069 85 ntBASIC2.92□□□□□ -1.94
LDLRP01130 AC127024.3-201ENST00000582841 460 ntTSL 3 BASIC2.92□□□□□ -1.94
LDLRP01130 uc_338.5-201ENST00000611839 155 ntBASIC2.92□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 143.6 ms