Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 ABCA12-201ENST00000272895 9100 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
USP3Q9Y6I4 OR1A1-202ENST00000641322 3743 ntAPPRIS P1 BASIC4.67□□□□□ -1.66
USP3Q9Y6I4 POU2F1-202ENST00000367862 14038 ntAPPRIS ALT2 TSL 1 (best) BASIC4.67□□□□□ -1.66
USP3Q9Y6I4 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC4.67□□□□□ -1.66
USP3Q9Y6I4 RLIM-201ENST00000332687 8317 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
USP3Q9Y6I4 NOL8P1-201ENST00000508336 3529 ntBASIC4.67□□□□□ -1.66
USP3Q9Y6I4 SYTL2-217ENST00000528231 3536 ntAPPRIS ALT1 TSL 1 (best) BASIC4.67□□□□□ -1.66
USP3Q9Y6I4 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC4.67□□□□□ -1.66
USP3Q9Y6I4 RBBP6-203ENST00000381039 3384 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
USP3Q9Y6I4 PAPOLA-202ENST00000392990 2588 ntTSL 5 BASIC4.66□□□□□ -1.66
USP3Q9Y6I4 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC4.66□□□□□ -1.66
USP3Q9Y6I4 AC092268.1-201ENST00000342691 405 ntBASIC4.66□□□□□ -1.66
USP3Q9Y6I4 RNU1-20P-201ENST00000363314 162 ntBASIC4.66□□□□□ -1.66
USP3Q9Y6I4 Y_RNA.272-201ENST00000364696 102 ntBASIC4.66□□□□□ -1.66
USP3Q9Y6I4 RNU1-63P-201ENST00000383902 164 ntBASIC4.66□□□□□ -1.66
USP3Q9Y6I4 RNU6-658P-201ENST00000384606 106 ntBASIC4.66□□□□□ -1.66
USP3Q9Y6I4 U3.19-201ENST00000390893 196 ntBASIC4.66□□□□□ -1.66
USP3Q9Y6I4 RPS26P42-201ENST00000413485 326 ntBASIC4.66□□□□□ -1.66
USP3Q9Y6I4 AC104462.2-201ENST00000418402 271 ntTSL 3 BASIC4.66□□□□□ -1.66
USP3Q9Y6I4 AC078809.1-201ENST00000427601 140 ntBASIC4.66□□□□□ -1.66
USP3Q9Y6I4 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC4.66□□□□□ -1.66
USP3Q9Y6I4 GPM6BP3-201ENST00000442797 145 ntBASIC4.66□□□□□ -1.66
USP3Q9Y6I4 AL451050.1-201ENST00000450126 415 ntBASIC4.66□□□□□ -1.66
USP3Q9Y6I4 RN7SL98P-201ENST00000462271 300 ntBASIC4.66□□□□□ -1.66
USP3Q9Y6I4 AC011276.1-201ENST00000469688 323 ntBASIC4.66□□□□□ -1.66
USP3Q9Y6I4 RN7SL817P-201ENST00000480777 288 ntBASIC4.66□□□□□ -1.66
USP3Q9Y6I4 RN7SL810P-201ENST00000493031 276 ntBASIC4.66□□□□□ -1.66
USP3Q9Y6I4 RPL30P5-201ENST00000494923 336 ntBASIC4.66□□□□□ -1.66
USP3Q9Y6I4 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC4.66□□□□□ -1.66
USP3Q9Y6I4 AC091874.1-201ENST00000511402 339 ntBASIC4.66□□□□□ -1.66
USP3Q9Y6I4 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC4.66□□□□□ -1.66
USP3Q9Y6I4 AC074133.1-201ENST00000515696 183 ntBASIC4.66□□□□□ -1.66
USP3Q9Y6I4 RNA5SP497-201ENST00000516081 97 ntBASIC4.66□□□□□ -1.66
USP3Q9Y6I4 AC021231.3-201ENST00000558497 370 ntBASIC4.66□□□□□ -1.66
USP3Q9Y6I4 AC233702.2-202ENST00000562547 291 ntBASIC4.66□□□□□ -1.66
USP3Q9Y6I4 KLKP1-201ENST00000595979 403 ntBASIC4.66□□□□□ -1.66
USP3Q9Y6I4 AL133393.1-201ENST00000603277 287 ntBASIC4.66□□□□□ -1.66
USP3Q9Y6I4 AC107031.1-201ENST00000604939 347 ntTSL 2 BASIC4.66□□□□□ -1.66
USP3Q9Y6I4 U2.21-201ENST00000637295 81 ntBASIC4.66□□□□□ -1.66
USP3Q9Y6I4 ARHGAP42-203ENST00000524892 5685 ntTSL 5 BASIC4.66□□□□□ -1.66
USP3Q9Y6I4 RANBP3L-201ENST00000296604 3104 ntAPPRIS P3 TSL 1 (best) BASIC4.66□□□□□ -1.66
USP3Q9Y6I4 PCDH11X-204ENST00000373088 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC4.66□□□□□ -1.66
USP3Q9Y6I4 RIMS1-204ENST00000401910 3542 ntTSL 2 BASIC4.66□□□□□ -1.66
USP3Q9Y6I4 LZTFL1-216ENST00000539217 4113 ntTSL 2 BASIC4.66□□□□□ -1.66
USP3Q9Y6I4 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC4.66□□□□□ -1.66
USP3Q9Y6I4 ROS1-201ENST00000368507 7417 ntAPPRIS ALT2 TSL 5 BASIC4.66□□□□□ -1.66
USP3Q9Y6I4 ADAM29-214ENST00000618444 2949 ntAPPRIS P1 TSL 4 BASIC4.66□□□□□ -1.66
USP3Q9Y6I4 RBBP8P1-201ENST00000449447 1844 ntBASIC4.65□□□□□ -1.66
USP3Q9Y6I4 XKR4-201ENST00000327381 19880 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.66
USP3Q9Y6I4 TPRG1-201ENST00000345063 5479 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.66
USP3Q9Y6I4 Y_RNA.81-201ENST00000362997 102 ntBASIC4.65□□□□□ -1.67
USP3Q9Y6I4 RNA5SP509-201ENST00000364577 119 ntBASIC4.65□□□□□ -1.67
USP3Q9Y6I4 RNU6-312P-201ENST00000364629 107 ntBASIC4.65□□□□□ -1.67
USP3Q9Y6I4 SNORD116-20-201ENST00000384529 92 ntBASIC4.65□□□□□ -1.67
USP3Q9Y6I4 RNU6-959P-201ENST00000384671 107 ntBASIC4.65□□□□□ -1.67
USP3Q9Y6I4 AL357139.1-201ENST00000407792 426 ntBASIC4.65□□□□□ -1.67
USP3Q9Y6I4 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC4.65□□□□□ -1.67
USP3Q9Y6I4 HMGN2P30-201ENST00000423237 256 ntBASIC4.65□□□□□ -1.67
USP3Q9Y6I4 RPS29P17-201ENST00000430795 166 ntBASIC4.65□□□□□ -1.67
USP3Q9Y6I4 RNU1-103P-201ENST00000516502 125 ntBASIC4.65□□□□□ -1.67
USP3Q9Y6I4 AC027801.4-201ENST00000518420 395 ntTSL 5 BASIC4.65□□□□□ -1.67
USP3Q9Y6I4 AC022081.1-201ENST00000537327 433 ntTSL 2 BASIC4.65□□□□□ -1.67
USP3Q9Y6I4 MFAP5-211ENST00000540087 492 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
USP3Q9Y6I4 UBL5P4-201ENST00000562584 236 ntBASIC4.65□□□□□ -1.67
USP3Q9Y6I4 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC4.65□□□□□ -1.67
USP3Q9Y6I4 FTX_3.1-201ENST00000610451 147 ntBASIC4.65□□□□□ -1.67
USP3Q9Y6I4 MIR378J-201ENST00000611988 109 ntBASIC4.65□□□□□ -1.67
USP3Q9Y6I4 MIR6134-201ENST00000617606 109 ntBASIC4.65□□□□□ -1.67
USP3Q9Y6I4 FLJ46284-201ENST00000504861 3421 ntTSL 2 BASIC4.65□□□□□ -1.67
USP3Q9Y6I4 ZNF204P-201ENST00000416749 2397 ntBASIC4.65□□□□□ -1.67
USP3Q9Y6I4 C6orf10-207ENST00000533191 2170 ntAPPRIS ALT2 TSL 1 (best) BASIC4.65□□□□□ -1.67
USP3Q9Y6I4 COPG2-201ENST00000330992 3073 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
USP3Q9Y6I4 GABRG2-210ENST00000638772 7669 ntTSL 5 BASIC4.64□□□□□ -1.67
USP3Q9Y6I4 STON1-GTF2A1L-204ENST00000405008 3821 ntAPPRIS P1 TSL 5 BASIC4.64□□□□□ -1.67
USP3Q9Y6I4 SMC2-AS1-201ENST00000603487 7020 ntTSL 2 BASIC4.64□□□□□ -1.67
USP3Q9Y6I4 MFSD8-242ENST00000641690 4199 ntBASIC4.64□□□□□ -1.67
USP3Q9Y6I4 AC110491.1-201ENST00000562191 2010 ntBASIC4.64□□□□□ -1.67
USP3Q9Y6I4 RNA5SP307-201ENST00000362863 116 ntBASIC4.64□□□□□ -1.67
USP3Q9Y6I4 SNORA7.2-201ENST00000364446 145 ntBASIC4.64□□□□□ -1.67
USP3Q9Y6I4 SNORA72.2-201ENST00000365028 127 ntBASIC4.64□□□□□ -1.67
USP3Q9Y6I4 RNU6-898P-201ENST00000365627 104 ntBASIC4.64□□□□□ -1.67
USP3Q9Y6I4 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC4.64□□□□□ -1.67
USP3Q9Y6I4 RNU6-217P-201ENST00000384164 104 ntBASIC4.64□□□□□ -1.67
USP3Q9Y6I4 PPIAP31-201ENST00000405422 495 ntBASIC4.64□□□□□ -1.67
USP3Q9Y6I4 SNORA11F-201ENST00000408237 128 ntBASIC4.64□□□□□ -1.67
USP3Q9Y6I4 SNORA74C-2-201ENST00000411179 201 ntBASIC4.64□□□□□ -1.67
USP3Q9Y6I4 AL512844.2-201ENST00000433990 593 ntBASIC4.64□□□□□ -1.67
USP3Q9Y6I4 AC007969.2-201ENST00000441891 191 ntBASIC4.64□□□□□ -1.67
USP3Q9Y6I4 IGLVIV-65-201ENST00000517313 360 ntBASIC4.64□□□□□ -1.67
USP3Q9Y6I4 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC4.64□□□□□ -1.67
USP3Q9Y6I4 HSPE1P4-201ENST00000550617 308 ntBASIC4.64□□□□□ -1.67
USP3Q9Y6I4 IGHV4OR15-8-201ENST00000557788 353 ntAPPRIS P1 BASIC4.64□□□□□ -1.67
USP3Q9Y6I4 AC079070.1-201ENST00000578740 555 ntTSL 2 BASIC4.64□□□□□ -1.67
USP3Q9Y6I4 AC233702.9-201ENST00000581528 203 ntBASIC4.64□□□□□ -1.67
USP3Q9Y6I4 RPS4XP16-203ENST00000596904 698 ntTSL 5 BASIC4.64□□□□□ -1.67
USP3Q9Y6I4 AC010999.1-201ENST00000611856 324 ntBASIC4.64□□□□□ -1.67
USP3Q9Y6I4 uc_338.13-201ENST00000618243 179 ntBASIC4.64□□□□□ -1.67
USP3Q9Y6I4 AC135068.2-201ENST00000622410 353 ntAPPRIS P1 BASIC4.64□□□□□ -1.67
USP3Q9Y6I4 LINC01239-202ENST00000436786 2347 ntTSL 2 BASIC4.64□□□□□ -1.67
USP3Q9Y6I4 AP1G1-207ENST00000564155 2723 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 104.3 ms