Protein–RNA interactions for Protein: Q9Y3E7

CHMP3, Charged multivesicular body protein 3, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3Q9Y3E7 HERC4-204ENST00000395198 4445 ntAPPRIS ALT1 TSL 1 (best) BASIC5.03□□□□□ -1.6
CHMP3Q9Y3E7 RNU1-108P-201ENST00000362556 161 ntBASIC5.03□□□□□ -1.6
CHMP3Q9Y3E7 SNORD81.1-201ENST00000363064 77 ntBASIC5.03□□□□□ -1.6
CHMP3Q9Y3E7 Y_RNA.200-201ENST00000364018 102 ntBASIC5.03□□□□□ -1.6
CHMP3Q9Y3E7 RNU6-173P-201ENST00000364215 104 ntBASIC5.03□□□□□ -1.6
CHMP3Q9Y3E7 MIR1298-201ENST00000408783 112 ntBASIC5.03□□□□□ -1.6
CHMP3Q9Y3E7 Y_RNA.602-201ENST00000410535 92 ntBASIC5.03□□□□□ -1.6
CHMP3Q9Y3E7 AC239803.1-203ENST00000411978 452 ntTSL 2 BASIC5.03□□□□□ -1.6
CHMP3Q9Y3E7 AL117337.1-201ENST00000412789 444 ntTSL 3 BASIC5.03□□□□□ -1.6
CHMP3Q9Y3E7 AL627311.1-201ENST00000431514 115 ntBASIC5.03□□□□□ -1.6
CHMP3Q9Y3E7 AC004875.1-201ENST00000432702 378 ntTSL 3 BASIC5.03□□□□□ -1.6
CHMP3Q9Y3E7 AC013470.1-201ENST00000453438 462 ntBASIC5.03□□□□□ -1.6
CHMP3Q9Y3E7 ENSA-210ENST00000503241 574 ntTSL 3 BASIC5.03□□□□□ -1.6
CHMP3Q9Y3E7 MLLT10P2-201ENST00000506434 249 ntBASIC5.03□□□□□ -1.6
CHMP3Q9Y3E7 LINC02122-201ENST00000511395 577 ntTSL 4 BASIC5.03□□□□□ -1.6
CHMP3Q9Y3E7 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC5.03□□□□□ -1.6
CHMP3Q9Y3E7 AC023824.2-201ENST00000566185 400 ntBASIC5.03□□□□□ -1.6
CHMP3Q9Y3E7 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC5.03□□□□□ -1.6
CHMP3Q9Y3E7 SNORD84-203ENST00000584275 78 ntBASIC5.03□□□□□ -1.6
CHMP3Q9Y3E7 AC005046.1-201ENST00000608515 625 ntBASIC5.03□□□□□ -1.6
CHMP3Q9Y3E7 AC091903.1-201ENST00000624322 454 ntBASIC5.03□□□□□ -1.6
CHMP3Q9Y3E7 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC5.03□□□□□ -1.6
CHMP3Q9Y3E7 CDH9-201ENST00000231021 3079 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
CHMP3Q9Y3E7 LINC01102-204ENST00000451400 3778 ntTSL 2 BASIC5.03□□□□□ -1.6
CHMP3Q9Y3E7 AC116096.1-201ENST00000566804 2314 ntBASIC5.03□□□□□ -1.6
CHMP3Q9Y3E7 ADGRG2-201ENST00000340581 3594 ntTSL 2 BASIC5.03□□□□□ -1.6
CHMP3Q9Y3E7 ACSM3-201ENST00000289416 2845 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
CHMP3Q9Y3E7 DNAH8-202ENST00000359357 13864 ntAPPRIS ALT2 TSL 2 BASIC5.02□□□□□ -1.61
CHMP3Q9Y3E7 NRIP1-201ENST00000318948 7556 ntAPPRIS P1 TSL 2 BASIC5.02□□□□□ -1.61
CHMP3Q9Y3E7 ZNF479-201ENST00000319636 1811 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
CHMP3Q9Y3E7 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC5.02□□□□□ -1.61
CHMP3Q9Y3E7 LINC00630-205ENST00000440496 2101 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
CHMP3Q9Y3E7 C18orf54-202ENST00000382911 4056 ntTSL 5 BASIC5.02□□□□□ -1.61
CHMP3Q9Y3E7 FAT3-204ENST00000525166 18699 ntTSL 5 BASIC5.02□□□□□ -1.61
CHMP3Q9Y3E7 Y_RNA.245-201ENST00000364493 95 ntBASIC5.02□□□□□ -1.61
CHMP3Q9Y3E7 RNU6-102P-201ENST00000384485 104 ntBASIC5.02□□□□□ -1.61
CHMP3Q9Y3E7 MIR554-201ENST00000384874 96 ntBASIC5.02□□□□□ -1.61
CHMP3Q9Y3E7 AL079342.1-201ENST00000401460 267 ntBASIC5.02□□□□□ -1.61
CHMP3Q9Y3E7 CYCSP19-201ENST00000411715 316 ntBASIC5.02□□□□□ -1.61
CHMP3Q9Y3E7 TMEM167AP1-201ENST00000423409 219 ntBASIC5.02□□□□□ -1.61
CHMP3Q9Y3E7 TOMM20P4-201ENST00000427861 435 ntBASIC5.02□□□□□ -1.61
CHMP3Q9Y3E7 AC007919.1-201ENST00000429380 217 ntBASIC5.02□□□□□ -1.61
CHMP3Q9Y3E7 BX679664.1-201ENST00000434429 253 ntBASIC5.02□□□□□ -1.61
CHMP3Q9Y3E7 Z82188.1-201ENST00000436709 154 ntBASIC5.02□□□□□ -1.61
CHMP3Q9Y3E7 TOMM22P6-201ENST00000465035 409 ntBASIC5.02□□□□□ -1.61
CHMP3Q9Y3E7 RPL21P13-201ENST00000488305 481 ntBASIC5.02□□□□□ -1.61
CHMP3Q9Y3E7 AC010451.3-201ENST00000511721 444 ntTSL 3 BASIC5.02□□□□□ -1.61
CHMP3Q9Y3E7 AC084398.2-201ENST00000551918 564 ntTSL 4 BASIC5.02□□□□□ -1.61
CHMP3Q9Y3E7 AC005476.1-201ENST00000554427 397 ntBASIC5.02□□□□□ -1.61
CHMP3Q9Y3E7 MIR3910-1-201ENST00000580936 111 ntBASIC5.02□□□□□ -1.61
CHMP3Q9Y3E7 AC006130.2-201ENST00000586202 326 ntBASIC5.02□□□□□ -1.61
CHMP3Q9Y3E7 AC093227.3-202ENST00000586606 704 ntAPPRIS P5 TSL 3 BASIC5.02□□□□□ -1.61
CHMP3Q9Y3E7 AC005255.1-201ENST00000593748 216 ntBASIC5.02□□□□□ -1.61
CHMP3Q9Y3E7 AL139395.1-201ENST00000603662 160 ntBASIC5.02□□□□□ -1.61
CHMP3Q9Y3E7 AC073657.2-201ENST00000605661 303 ntBASIC5.02□□□□□ -1.61
CHMP3Q9Y3E7 BX284668.6-201ENST00000606899 438 ntBASIC5.02□□□□□ -1.61
CHMP3Q9Y3E7 CENPF-206ENST00000614578 528 ntTSL 5 BASIC5.02□□□□□ -1.61
CHMP3Q9Y3E7 AC011476.5-201ENST00000615594 130 ntBASIC5.02□□□□□ -1.61
CHMP3Q9Y3E7 UBE2E2-207ENST00000628311 267 ntTSL 5 BASIC5.02□□□□□ -1.61
CHMP3Q9Y3E7 BCLAF1-214ENST00000531224 7263 ntAPPRIS P3 TSL 1 (best) BASIC5.02□□□□□ -1.61
CHMP3Q9Y3E7 POLK-201ENST00000241436 5911 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
CHMP3Q9Y3E7 SLC6A15-203ENST00000450363 4229 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
CHMP3Q9Y3E7 GABRG2-210ENST00000638772 7669 ntTSL 5 BASIC5.01□□□□□ -1.61
CHMP3Q9Y3E7 ASAH1-265ENST00000637922 2297 ntTSL 5 BASIC5.01□□□□□ -1.61
CHMP3Q9Y3E7 CEP295-201ENST00000325212 8057 ntAPPRIS P2 TSL 2 BASIC5.01□□□□□ -1.61
CHMP3Q9Y3E7 RNU6-166P-201ENST00000384371 107 ntBASIC5.01□□□□□ -1.61
CHMP3Q9Y3E7 RNY3P4-201ENST00000384428 101 ntBASIC5.01□□□□□ -1.61
CHMP3Q9Y3E7 Y_RNA.581-201ENST00000391017 97 ntBASIC5.01□□□□□ -1.61
CHMP3Q9Y3E7 RNU6-493P-201ENST00000391321 108 ntBASIC5.01□□□□□ -1.61
CHMP3Q9Y3E7 RPS29P13-201ENST00000402041 169 ntBASIC5.01□□□□□ -1.61
CHMP3Q9Y3E7 RN7SKP177-201ENST00000410567 355 ntBASIC5.01□□□□□ -1.61
CHMP3Q9Y3E7 TOMM22P1-201ENST00000418578 312 ntBASIC5.01□□□□□ -1.61
CHMP3Q9Y3E7 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC5.01□□□□□ -1.61
CHMP3Q9Y3E7 AC007560.1-201ENST00000426912 237 ntBASIC5.01□□□□□ -1.61
CHMP3Q9Y3E7 AL138752.1-201ENST00000452964 351 ntBASIC5.01□□□□□ -1.61
CHMP3Q9Y3E7 SNORA84-201ENST00000459229 133 ntBASIC5.01□□□□□ -1.61
CHMP3Q9Y3E7 snoU109.2-201ENST00000459316 135 ntBASIC5.01□□□□□ -1.61
CHMP3Q9Y3E7 MED28P2-201ENST00000475771 317 ntBASIC5.01□□□□□ -1.61
CHMP3Q9Y3E7 PPIAP15-201ENST00000479662 484 ntBASIC5.01□□□□□ -1.61
CHMP3Q9Y3E7 AC092059.1-201ENST00000485347 429 ntTSL 3 BASIC5.01□□□□□ -1.61
CHMP3Q9Y3E7 SCARNA15.2-201ENST00000516409 127 ntBASIC5.01□□□□□ -1.61
CHMP3Q9Y3E7 RNU6-255P-201ENST00000516957 105 ntBASIC5.01□□□□□ -1.61
CHMP3Q9Y3E7 SNORA31.19-201ENST00000517079 126 ntBASIC5.01□□□□□ -1.61
CHMP3Q9Y3E7 RNA5SP290-201ENST00000517133 127 ntBASIC5.01□□□□□ -1.61
CHMP3Q9Y3E7 IGHVII-62-1-201ENST00000519283 235 ntBASIC5.01□□□□□ -1.61
CHMP3Q9Y3E7 LINC01479-202ENST00000546170 444 ntTSL 2 BASIC5.01□□□□□ -1.61
CHMP3Q9Y3E7 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC5.01□□□□□ -1.61
CHMP3Q9Y3E7 CYP4A43P-201ENST00000568156 121 ntBASIC5.01□□□□□ -1.61
CHMP3Q9Y3E7 AC104581.2-201ENST00000572227 430 ntBASIC5.01□□□□□ -1.61
CHMP3Q9Y3E7 AC127459.3-201ENST00000624328 466 ntBASIC5.01□□□□□ -1.61
CHMP3Q9Y3E7 PREPL-207ENST00000409957 4703 ntTSL 5 BASIC5.01□□□□□ -1.61
CHMP3Q9Y3E7 MGAT4A-204ENST00000414521 3709 ntTSL 2 BASIC5□□□□□ -1.61
CHMP3Q9Y3E7 ORC3-201ENST00000257789 2501 ntAPPRIS P3 TSL 1 (best) BASIC5□□□□□ -1.61
CHMP3Q9Y3E7 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC5□□□□□ -1.61
CHMP3Q9Y3E7 AL365440.1-201ENST00000436135 2167 ntBASIC5□□□□□ -1.61
CHMP3Q9Y3E7 RNU6-227P-201ENST00000362865 103 ntBASIC5□□□□□ -1.61
CHMP3Q9Y3E7 RNU6-336P-201ENST00000364891 107 ntBASIC5□□□□□ -1.61
CHMP3Q9Y3E7 RGS4-201ENST00000367906 930 ntTSL 1 (best) BASIC5□□□□□ -1.61
CHMP3Q9Y3E7 AL359837.1-201ENST00000381357 287 ntBASIC5□□□□□ -1.61
CHMP3Q9Y3E7 RNU6-746P-201ENST00000384112 109 ntBASIC5□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 210.4 ms