Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC3.29□□□□□ -1.88
VPS4AQ9UN37 RPL23AP82-202ENST00000427528 469 ntBASIC3.29□□□□□ -1.88
VPS4AQ9UN37 AC092573.2-201ENST00000434546 243 ntBASIC3.29□□□□□ -1.88
VPS4AQ9UN37 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC3.29□□□□□ -1.88
VPS4AQ9UN37 RPS3AP52-201ENST00000435639 297 ntBASIC3.29□□□□□ -1.88
VPS4AQ9UN37 AC006028.1-201ENST00000438379 402 ntBASIC3.29□□□□□ -1.88
VPS4AQ9UN37 MTND1P17-201ENST00000448961 204 ntBASIC3.29□□□□□ -1.88
VPS4AQ9UN37 CENPBD1P1-201ENST00000464061 469 ntBASIC3.29□□□□□ -1.88
VPS4AQ9UN37 HMGB1P30-201ENST00000492455 606 ntBASIC3.29□□□□□ -1.88
VPS4AQ9UN37 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC3.29□□□□□ -1.88
VPS4AQ9UN37 TBCAP3-201ENST00000512475 312 ntBASIC3.29□□□□□ -1.88
VPS4AQ9UN37 MIR892C-201ENST00000516410 77 ntBASIC3.29□□□□□ -1.88
VPS4AQ9UN37 RNU4ATAC3P-201ENST00000516699 126 ntBASIC3.29□□□□□ -1.88
VPS4AQ9UN37 AC087854.1-201ENST00000519706 414 ntBASIC3.29□□□□□ -1.88
VPS4AQ9UN37 LINC02055-204ENST00000521034 432 ntTSL 5 BASIC3.29□□□□□ -1.88
VPS4AQ9UN37 AC025755.1-201ENST00000521306 278 ntBASIC3.29□□□□□ -1.88
VPS4AQ9UN37 HMGB1P14-201ENST00000557424 591 ntBASIC3.29□□□□□ -1.88
VPS4AQ9UN37 AC093515.1-201ENST00000567103 445 ntTSL 5 BASIC3.29□□□□□ -1.88
VPS4AQ9UN37 LARP7P3-201ENST00000579888 337 ntBASIC3.29□□□□□ -1.88
VPS4AQ9UN37 AC099506.2-201ENST00000623074 221 ntBASIC3.29□□□□□ -1.88
VPS4AQ9UN37 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC3.29□□□□□ -1.88
VPS4AQ9UN37 MIR1302-1-201ENST00000637932 143 ntBASIC3.29□□□□□ -1.88
VPS4AQ9UN37 C1orf141-203ENST00000371007 2153 ntAPPRIS P3 TSL 5 BASIC3.29□□□□□ -1.88
VPS4AQ9UN37 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
VPS4AQ9UN37 AL353743.1-202ENST00000431724 1695 ntBASIC3.29□□□□□ -1.88
VPS4AQ9UN37 PKN2-AS1-202ENST00000458097 3542 ntTSL 2 BASIC3.29□□□□□ -1.88
VPS4AQ9UN37 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC3.29□□□□□ -1.88
VPS4AQ9UN37 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC3.29□□□□□ -1.88
VPS4AQ9UN37 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
VPS4AQ9UN37 CUL1P1-201ENST00000509510 2425 ntBASIC3.29□□□□□ -1.88
VPS4AQ9UN37 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC3.29□□□□□ -1.88
VPS4AQ9UN37 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC3.29□□□□□ -1.88
VPS4AQ9UN37 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC3.28□□□□□ -1.88
VPS4AQ9UN37 AC006026.1-201ENST00000444025 1803 ntBASIC3.28□□□□□ -1.88
VPS4AQ9UN37 RNU1-75P-201ENST00000347264 129 ntBASIC3.28□□□□□ -1.88
VPS4AQ9UN37 SNORD3E-201ENST00000362899 217 ntBASIC3.28□□□□□ -1.88
VPS4AQ9UN37 SNORD14B-201ENST00000364533 90 ntBASIC3.28□□□□□ -1.88
VPS4AQ9UN37 DEFB125-201ENST00000382410 587 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
VPS4AQ9UN37 RNU6-166P-201ENST00000384371 107 ntBASIC3.28□□□□□ -1.88
VPS4AQ9UN37 RNU6-1179P-201ENST00000384667 107 ntBASIC3.28□□□□□ -1.88
VPS4AQ9UN37 RN7SKP158-201ENST00000410453 326 ntBASIC3.28□□□□□ -1.88
VPS4AQ9UN37 RPS20P15-201ENST00000412792 311 ntBASIC3.28□□□□□ -1.88
VPS4AQ9UN37 COTL1P1-201ENST00000422309 375 ntBASIC3.28□□□□□ -1.88
VPS4AQ9UN37 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC3.28□□□□□ -1.88
VPS4AQ9UN37 BX679664.1-201ENST00000434429 253 ntBASIC3.28□□□□□ -1.88
VPS4AQ9UN37 AL136234.1-201ENST00000437080 349 ntTSL 2 BASIC3.28□□□□□ -1.88
VPS4AQ9UN37 RPS4XP2-201ENST00000458402 793 ntBASIC3.28□□□□□ -1.88
VPS4AQ9UN37 AC008155.2-201ENST00000464337 397 ntBASIC3.28□□□□□ -1.88
VPS4AQ9UN37 RPS23P3-201ENST00000470993 430 ntBASIC3.28□□□□□ -1.88
VPS4AQ9UN37 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC3.28□□□□□ -1.88
VPS4AQ9UN37 AC008526.1-201ENST00000509149 338 ntBASIC3.28□□□□□ -1.88
VPS4AQ9UN37 AC126768.3-201ENST00000514519 560 ntTSL 4 BASIC3.28□□□□□ -1.88
VPS4AQ9UN37 Y_RNA.682-201ENST00000516457 100 ntBASIC3.28□□□□□ -1.88
VPS4AQ9UN37 COPS8P3-201ENST00000526024 482 ntBASIC3.28□□□□□ -1.88
VPS4AQ9UN37 AP005639.2-201ENST00000527592 928 ntBASIC3.28□□□□□ -1.88
VPS4AQ9UN37 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC3.28□□□□□ -1.88
VPS4AQ9UN37 AL352979.2-201ENST00000556988 366 ntTSL 3 BASIC3.28□□□□□ -1.88
VPS4AQ9UN37 YPEL5P2-201ENST00000605553 359 ntBASIC3.28□□□□□ -1.88
VPS4AQ9UN37 AL162274.2-201ENST00000614406 332 ntBASIC3.28□□□□□ -1.88
VPS4AQ9UN37 ZNF519P1-201ENST00000449011 1626 ntBASIC3.28□□□□□ -1.88
VPS4AQ9UN37 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC3.28□□□□□ -1.88
VPS4AQ9UN37 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC3.28□□□□□ -1.88
VPS4AQ9UN37 ACTR6-212ENST00000552376 1659 ntTSL 5 BASIC3.27□□□□□ -1.89
VPS4AQ9UN37 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC3.27□□□□□ -1.89
VPS4AQ9UN37 RNU6-778P-201ENST00000363269 103 ntBASIC3.27□□□□□ -1.89
VPS4AQ9UN37 RNU6-270P-201ENST00000364131 105 ntBASIC3.27□□□□□ -1.89
VPS4AQ9UN37 Y_RNA.324-201ENST00000365165 102 ntBASIC3.27□□□□□ -1.89
VPS4AQ9UN37 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC3.27□□□□□ -1.89
VPS4AQ9UN37 Y_RNA.510-201ENST00000384511 114 ntBASIC3.27□□□□□ -1.89
VPS4AQ9UN37 Y_RNA.623-201ENST00000411128 95 ntBASIC3.27□□□□□ -1.89
VPS4AQ9UN37 ATG3P1-201ENST00000419507 911 ntBASIC3.27□□□□□ -1.89
VPS4AQ9UN37 RPL7P37-201ENST00000425095 738 ntBASIC3.27□□□□□ -1.89
VPS4AQ9UN37 SKA2P1-201ENST00000425592 390 ntBASIC3.27□□□□□ -1.89
VPS4AQ9UN37 AC005300.1-201ENST00000428401 373 ntBASIC3.27□□□□□ -1.89
VPS4AQ9UN37 AC009969.1-201ENST00000438726 172 ntBASIC3.27□□□□□ -1.89
VPS4AQ9UN37 AL137789.1-201ENST00000439443 682 ntTSL 3 BASIC3.27□□□□□ -1.89
VPS4AQ9UN37 AL359672.1-201ENST00000442302 409 ntBASIC3.27□□□□□ -1.89
VPS4AQ9UN37 RBMY2UP-201ENST00000453474 324 ntBASIC3.27□□□□□ -1.89
VPS4AQ9UN37 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC3.27□□□□□ -1.89
VPS4AQ9UN37 RNU7-138P-201ENST00000459479 64 ntBASIC3.27□□□□□ -1.89
VPS4AQ9UN37 AC025518.1-201ENST00000479856 347 ntBASIC3.27□□□□□ -1.89
VPS4AQ9UN37 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC3.27□□□□□ -1.89
VPS4AQ9UN37 MTND5P5-201ENST00000503764 376 ntBASIC3.27□□□□□ -1.89
VPS4AQ9UN37 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC3.27□□□□□ -1.89
VPS4AQ9UN37 HPRT1P3-201ENST00000539521 576 ntBASIC3.27□□□□□ -1.89
VPS4AQ9UN37 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC3.27□□□□□ -1.89
VPS4AQ9UN37 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC3.27□□□□□ -1.89
VPS4AQ9UN37 MIR4325-201ENST00000583049 90 ntBASIC3.27□□□□□ -1.89
VPS4AQ9UN37 AL356055.1-201ENST00000602528 446 ntBASIC3.27□□□□□ -1.89
VPS4AQ9UN37 APOOP1-201ENST00000604695 592 ntBASIC3.27□□□□□ -1.89
VPS4AQ9UN37 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC3.27□□□□□ -1.89
VPS4AQ9UN37 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC3.26□□□□□ -1.89
VPS4AQ9UN37 AC017071.1-201ENST00000564407 2204 ntBASIC3.26□□□□□ -1.89
VPS4AQ9UN37 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC3.26□□□□□ -1.89
VPS4AQ9UN37 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC3.26□□□□□ -1.89
VPS4AQ9UN37 AC126124.2-201ENST00000413542 321 ntBASIC3.26□□□□□ -1.89
VPS4AQ9UN37 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC3.26□□□□□ -1.89
VPS4AQ9UN37 LINC02526-201ENST00000424162 419 ntTSL 2 BASIC3.26□□□□□ -1.89
VPS4AQ9UN37 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC3.26□□□□□ -1.89
VPS4AQ9UN37 AC098614.2-201ENST00000426040 255 ntBASIC3.26□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 134.1 ms