Protein–RNA interactions for Protein: Q9UJV9

DDX41, Probable ATP-dependent RNA helicase DDX41, humanhuman

Known RBP Predictions only

Length 622 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41Q9UJV9 HMGN2P7-201ENST00000456186 273 ntBASIC4.4□□□□□ -1.71
DDX41Q9UJV9 RPL21P11-201ENST00000461458 483 ntBASIC4.4□□□□□ -1.71
DDX41Q9UJV9 RPL30P14-201ENST00000482744 348 ntBASIC4.4□□□□□ -1.71
DDX41Q9UJV9 RNU6-699P-201ENST00000517081 110 ntBASIC4.4□□□□□ -1.71
DDX41Q9UJV9 AP005902.1-201ENST00000521358 186 ntBASIC4.4□□□□□ -1.71
DDX41Q9UJV9 AC104237.1-201ENST00000527443 539 ntTSL 4 BASIC4.4□□□□□ -1.71
DDX41Q9UJV9 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC4.4□□□□□ -1.71
DDX41Q9UJV9 AC073655.2-202ENST00000547927 401 ntTSL 3 BASIC4.4□□□□□ -1.71
DDX41Q9UJV9 MIR3944-201ENST00000581277 108 ntBASIC4.4□□□□□ -1.71
DDX41Q9UJV9 AC008962.1-201ENST00000605729 304 ntBASIC4.4□□□□□ -1.71
DDX41Q9UJV9 SNORA51-201ENST00000606420 132 ntBASIC4.4□□□□□ -1.71
DDX41Q9UJV9 AC116312.1-201ENST00000606841 314 ntBASIC4.4□□□□□ -1.71
DDX41Q9UJV9 MIR8076-201ENST00000611401 83 ntBASIC4.4□□□□□ -1.71
DDX41Q9UJV9 AL732372.2-225ENST00000642124 456 ntBASIC4.4□□□□□ -1.71
DDX41Q9UJV9 AC018462.1-201ENST00000425966 1684 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
DDX41Q9UJV9 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
DDX41Q9UJV9 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC4.39□□□□□ -1.71
DDX41Q9UJV9 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
DDX41Q9UJV9 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
DDX41Q9UJV9 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
DDX41Q9UJV9 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
DDX41Q9UJV9 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
DDX41Q9UJV9 IPO8P1-201ENST00000455509 3109 ntBASIC4.39□□□□□ -1.71
DDX41Q9UJV9 RNU6-78P-201ENST00000362897 107 ntBASIC4.39□□□□□ -1.71
DDX41Q9UJV9 RNA5SP387-201ENST00000364226 106 ntBASIC4.39□□□□□ -1.71
DDX41Q9UJV9 U8.8-201ENST00000365399 135 ntBASIC4.39□□□□□ -1.71
DDX41Q9UJV9 PVALB-202ENST00000404171 422 ntTSL 2 BASIC4.39□□□□□ -1.71
DDX41Q9UJV9 AL117337.1-201ENST00000412789 444 ntTSL 3 BASIC4.39□□□□□ -1.71
DDX41Q9UJV9 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC4.39□□□□□ -1.71
DDX41Q9UJV9 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC4.39□□□□□ -1.71
DDX41Q9UJV9 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC4.39□□□□□ -1.71
DDX41Q9UJV9 ATP2B2-IT1-201ENST00000440152 472 ntTSL 3 BASIC4.39□□□□□ -1.71
DDX41Q9UJV9 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC4.39□□□□□ -1.71
DDX41Q9UJV9 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
DDX41Q9UJV9 RPL32P34-201ENST00000486380 400 ntBASIC4.39□□□□□ -1.71
DDX41Q9UJV9 PTPRG-AS1-210ENST00000498655 547 ntTSL 4 BASIC4.39□□□□□ -1.71
DDX41Q9UJV9 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC4.39□□□□□ -1.71
DDX41Q9UJV9 SNORA70.14-201ENST00000516205 110 ntBASIC4.39□□□□□ -1.71
DDX41Q9UJV9 RNU1-95P-201ENST00000516357 160 ntBASIC4.39□□□□□ -1.71
DDX41Q9UJV9 RNU1-128P-201ENST00000516704 160 ntBASIC4.39□□□□□ -1.71
DDX41Q9UJV9 AC005476.1-201ENST00000554427 397 ntBASIC4.39□□□□□ -1.71
DDX41Q9UJV9 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC4.39□□□□□ -1.71
DDX41Q9UJV9 SRGNP1-201ENST00000603392 451 ntBASIC4.39□□□□□ -1.71
DDX41Q9UJV9 ADAMTS9-AS1-207ENST00000594810 3609 ntTSL 4 BASIC4.39□□□□□ -1.71
DDX41Q9UJV9 LLPH-201ENST00000266604 7746 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
DDX41Q9UJV9 LINC00971-202ENST00000484892 7308 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
DDX41Q9UJV9 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC4.38□□□□□ -1.71
DDX41Q9UJV9 MAPK10-372ENST00000641954 3413 ntBASIC4.38□□□□□ -1.71
DDX41Q9UJV9 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
DDX41Q9UJV9 MCFD2P1-201ENST00000417812 300 ntBASIC4.38□□□□□ -1.71
DDX41Q9UJV9 AC099548.1-201ENST00000421443 426 ntBASIC4.38□□□□□ -1.71
DDX41Q9UJV9 BX276092.3-201ENST00000424182 230 ntBASIC4.38□□□□□ -1.71
DDX41Q9UJV9 RPL23AP82-202ENST00000427528 469 ntBASIC4.38□□□□□ -1.71
DDX41Q9UJV9 CEP57L1P1-201ENST00000430943 1201 ntBASIC4.38□□□□□ -1.71
DDX41Q9UJV9 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC4.38□□□□□ -1.71
DDX41Q9UJV9 CEACAMP4-201ENST00000457676 421 ntBASIC4.38□□□□□ -1.71
DDX41Q9UJV9 RNU7-170P-201ENST00000459303 61 ntBASIC4.38□□□□□ -1.71
DDX41Q9UJV9 SNRPGP3-201ENST00000469405 227 ntBASIC4.38□□□□□ -1.71
DDX41Q9UJV9 RPL23AP49-201ENST00000492925 468 ntBASIC4.38□□□□□ -1.71
DDX41Q9UJV9 NDUFB4P9-201ENST00000511646 388 ntBASIC4.38□□□□□ -1.71
DDX41Q9UJV9 RNU6-612P-201ENST00000516909 102 ntBASIC4.38□□□□□ -1.71
DDX41Q9UJV9 AC103796.1-201ENST00000530663 358 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
DDX41Q9UJV9 UBE2Q2P8-201ENST00000560644 102 ntBASIC4.38□□□□□ -1.71
DDX41Q9UJV9 AC024153.1-201ENST00000603103 365 ntBASIC4.38□□□□□ -1.71
DDX41Q9UJV9 AC006157.1-201ENST00000611750 366 ntBASIC4.38□□□□□ -1.71
DDX41Q9UJV9 SUCNR1-201ENST00000362032 4181 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
DDX41Q9UJV9 PSMA5-201ENST00000271308 3729 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
DDX41Q9UJV9 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
DDX41Q9UJV9 RNU6-428P-201ENST00000362942 107 ntBASIC4.37□□□□□ -1.71
DDX41Q9UJV9 RNU6-527P-201ENST00000363425 104 ntBASIC4.37□□□□□ -1.71
DDX41Q9UJV9 RNU6-898P-201ENST00000365627 104 ntBASIC4.37□□□□□ -1.71
DDX41Q9UJV9 RNU6-1032P-201ENST00000384100 107 ntBASIC4.37□□□□□ -1.71
DDX41Q9UJV9 EIF4EBP2P3-201ENST00000403144 334 ntBASIC4.37□□□□□ -1.71
DDX41Q9UJV9 SNORA11.1-201ENST00000408133 129 ntBASIC4.37□□□□□ -1.71
DDX41Q9UJV9 AC008267.5-201ENST00000424928 265 ntBASIC4.37□□□□□ -1.71
DDX41Q9UJV9 AL591419.1-201ENST00000427423 339 ntBASIC4.37□□□□□ -1.71
DDX41Q9UJV9 RPL17P19-201ENST00000489069 552 ntBASIC4.37□□□□□ -1.71
DDX41Q9UJV9 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC4.37□□□□□ -1.71
DDX41Q9UJV9 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC4.37□□□□□ -1.71
DDX41Q9UJV9 AP002892.1-201ENST00000537727 550 ntTSL 4 BASIC4.37□□□□□ -1.71
DDX41Q9UJV9 AC004147.3-201ENST00000577709 375 ntTSL 3 BASIC4.37□□□□□ -1.71
DDX41Q9UJV9 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC4.37□□□□□ -1.71
DDX41Q9UJV9 AC008737.2-201ENST00000599446 118 ntBASIC4.37□□□□□ -1.71
DDX41Q9UJV9 AC003973.1-201ENST00000600071 546 ntTSL 4 BASIC4.37□□□□□ -1.71
DDX41Q9UJV9 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC4.37□□□□□ -1.71
DDX41Q9UJV9 AC012531.5-201ENST00000611375 151 ntBASIC4.37□□□□□ -1.71
DDX41Q9UJV9 THEMIS-202ENST00000368250 4101 ntAPPRIS P3 TSL 5 BASIC4.37□□□□□ -1.71
DDX41Q9UJV9 C2orf78-201ENST00000409561 3045 ntAPPRIS P1 TSL 2 BASIC4.37□□□□□ -1.71
DDX41Q9UJV9 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC4.36□□□□□ -1.71
DDX41Q9UJV9 ZC3H11A-214ENST00000639812 11825 ntAPPRIS P1 TSL 5 BASIC4.36□□□□□ -1.71
DDX41Q9UJV9 Y_RNA.148-201ENST00000363557 117 ntBASIC4.36□□□□□ -1.71
DDX41Q9UJV9 Y_RNA.364-201ENST00000365532 101 ntBASIC4.36□□□□□ -1.71
DDX41Q9UJV9 Z98749.2-208ENST00000381646 500 ntBASIC4.36□□□□□ -1.71
DDX41Q9UJV9 Y_RNA.459-201ENST00000384251 102 ntBASIC4.36□□□□□ -1.71
DDX41Q9UJV9 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC4.36□□□□□ -1.71
DDX41Q9UJV9 AL139247.1-201ENST00000422768 325 ntBASIC4.36□□□□□ -1.71
DDX41Q9UJV9 EIF4EP2-201ENST00000422816 654 ntBASIC4.36□□□□□ -1.71
DDX41Q9UJV9 AC002075.2-201ENST00000425207 252 ntBASIC4.36□□□□□ -1.71
DDX41Q9UJV9 AL591043.1-201ENST00000432461 424 ntBASIC4.36□□□□□ -1.71
DDX41Q9UJV9 HMGB1P37-201ENST00000439613 609 ntBASIC4.36□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 153.9 ms