Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 AL136537.1-201ENST00000508199 538 ntTSL 3 BASIC2.43□□□□□ -2.02
VPS54Q9P1Q0 AC079349.1-201ENST00000509096 589 ntTSL 2 BASIC2.43□□□□□ -2.02
VPS54Q9P1Q0 AC010486.3-201ENST00000511602 785 ntBASIC2.43□□□□□ -2.02
VPS54Q9P1Q0 LINC02500-201ENST00000512547 493 ntTSL 3 BASIC2.43□□□□□ -2.02
VPS54Q9P1Q0 AC107023.1-201ENST00000552757 356 ntTSL 5 BASIC2.43□□□□□ -2.02
VPS54Q9P1Q0 LINC00933-203ENST00000559812 219 ntBASIC2.43□□□□□ -2.02
VPS54Q9P1Q0 MYL12BP1-201ENST00000569826 507 ntBASIC2.43□□□□□ -2.02
VPS54Q9P1Q0 MIR3616-201ENST00000584070 92 ntBASIC2.43□□□□□ -2.02
VPS54Q9P1Q0 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC2.43□□□□□ -2.02
VPS54Q9P1Q0 DEFB131E-202ENST00000602581 683 ntBASIC2.43□□□□□ -2.02
VPS54Q9P1Q0 AC064872.1-201ENST00000604823 1072 ntBASIC2.43□□□□□ -2.02
VPS54Q9P1Q0 MIR98-201ENST00000606724 119 ntBASIC2.43□□□□□ -2.02
VPS54Q9P1Q0 AC012409.4-201ENST00000612923 249 ntBASIC2.43□□□□□ -2.02
VPS54Q9P1Q0 AL359547.2-201ENST00000615810 418 ntBASIC2.43□□□□□ -2.02
VPS54Q9P1Q0 Y_RNA.201-201ENST00000364052 96 ntBASIC2.42□□□□□ -2.02
VPS54Q9P1Q0 AL135786.1-201ENST00000415892 214 ntBASIC2.42□□□□□ -2.02
VPS54Q9P1Q0 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC2.42□□□□□ -2.02
VPS54Q9P1Q0 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC2.42□□□□□ -2.02
VPS54Q9P1Q0 LINC02195-201ENST00000443373 294 ntTSL 3 BASIC2.42□□□□□ -2.02
VPS54Q9P1Q0 AC244505.5-201ENST00000443639 207 ntBASIC2.42□□□□□ -2.02
VPS54Q9P1Q0 MTND2P4-201ENST00000445034 1004 ntBASIC2.42□□□□□ -2.02
VPS54Q9P1Q0 AL353705.4-201ENST00000449661 238 ntBASIC2.42□□□□□ -2.02
VPS54Q9P1Q0 LINC02077-201ENST00000465795 409 ntTSL 3 BASIC2.42□□□□□ -2.02
VPS54Q9P1Q0 OARD1-209ENST00000471367 401 ntTSL 2 BASIC2.42□□□□□ -2.02
VPS54Q9P1Q0 AC022493.1-201ENST00000492984 337 ntBASIC2.42□□□□□ -2.02
VPS54Q9P1Q0 AC023141.11-201ENST00000508864 202 ntBASIC2.42□□□□□ -2.02
VPS54Q9P1Q0 AC106744.2-201ENST00000513955 898 ntTSL 5 BASIC2.42□□□□□ -2.02
VPS54Q9P1Q0 RNA5SP82-201ENST00000516707 92 ntBASIC2.42□□□□□ -2.02
VPS54Q9P1Q0 Y_RNA.695-201ENST00000516715 107 ntBASIC2.42□□□□□ -2.02
VPS54Q9P1Q0 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC2.42□□□□□ -2.02
VPS54Q9P1Q0 AL352984.1-201ENST00000556949 276 ntTSL 3 BASIC2.42□□□□□ -2.02
VPS54Q9P1Q0 AC025678.1-201ENST00000567861 338 ntBASIC2.42□□□□□ -2.02
VPS54Q9P1Q0 MIR3913-1-201ENST00000577744 102 ntBASIC2.42□□□□□ -2.02
VPS54Q9P1Q0 MIR3199-1-201ENST00000582434 88 ntBASIC2.42□□□□□ -2.02
VPS54Q9P1Q0 AC098848.2-201ENST00000588023 330 ntBASIC2.42□□□□□ -2.02
VPS54Q9P1Q0 AC040904.1-201ENST00000590850 223 ntBASIC2.42□□□□□ -2.02
VPS54Q9P1Q0 AC008121.1-201ENST00000603244 268 ntBASIC2.42□□□□□ -2.02
VPS54Q9P1Q0 AL139286.2-201ENST00000606838 396 ntBASIC2.42□□□□□ -2.02
VPS54Q9P1Q0 AL158063.1-201ENST00000615349 536 ntBASIC2.42□□□□□ -2.02
VPS54Q9P1Q0 AL157786.1-207ENST00000627771 695 ntBASIC2.42□□□□□ -2.02
VPS54Q9P1Q0 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC2.41□□□□□ -2.02
VPS54Q9P1Q0 AL139276.1-201ENST00000311910 1001 ntBASIC2.41□□□□□ -2.02
VPS54Q9P1Q0 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC2.41□□□□□ -2.02
VPS54Q9P1Q0 RNU6-61P-201ENST00000365528 109 ntBASIC2.41□□□□□ -2.02
VPS54Q9P1Q0 RNU1-52P-201ENST00000384190 164 ntBASIC2.41□□□□□ -2.02
VPS54Q9P1Q0 RNU6-166P-201ENST00000384371 107 ntBASIC2.41□□□□□ -2.02
VPS54Q9P1Q0 RNU6-220P-201ENST00000390919 107 ntBASIC2.41□□□□□ -2.02
VPS54Q9P1Q0 RNU6ATAC37P-201ENST00000408328 131 ntBASIC2.41□□□□□ -2.02
VPS54Q9P1Q0 RNU4ATAC16P-201ENST00000408512 126 ntBASIC2.41□□□□□ -2.02
VPS54Q9P1Q0 AL139156.1-201ENST00000412785 841 ntBASIC2.41□□□□□ -2.02
VPS54Q9P1Q0 AC093157.2-201ENST00000414686 671 ntTSL 5 BASIC2.41□□□□□ -2.02
VPS54Q9P1Q0 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC2.41□□□□□ -2.02
VPS54Q9P1Q0 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC2.41□□□□□ -2.02
VPS54Q9P1Q0 AL160275.3-201ENST00000423876 471 ntBASIC2.41□□□□□ -2.02
VPS54Q9P1Q0 MTCO3P30-201ENST00000426425 670 ntBASIC2.41□□□□□ -2.02
VPS54Q9P1Q0 Z98742.2-201ENST00000431564 187 ntBASIC2.41□□□□□ -2.02
VPS54Q9P1Q0 AL078601.1-201ENST00000444542 271 ntBASIC2.41□□□□□ -2.02
VPS54Q9P1Q0 USP9YP29-201ENST00000445112 563 ntBASIC2.41□□□□□ -2.02
VPS54Q9P1Q0 MRPL42P6-201ENST00000486397 371 ntBASIC2.41□□□□□ -2.02
VPS54Q9P1Q0 AC116562.3-201ENST00000506136 177 ntBASIC2.41□□□□□ -2.02
VPS54Q9P1Q0 AC116655.1-201ENST00000508324 901 ntBASIC2.41□□□□□ -2.02
VPS54Q9P1Q0 AF117829.1-203ENST00000520306 421 ntTSL 5 BASIC2.41□□□□□ -2.02
VPS54Q9P1Q0 AC108471.2-204ENST00000526807 784 ntTSL 5 BASIC2.41□□□□□ -2.02
VPS54Q9P1Q0 AC068587.5-201ENST00000528506 175 ntBASIC2.41□□□□□ -2.02
VPS54Q9P1Q0 ZNF84-205ENST00000535439 647 ntTSL 5 BASIC2.41□□□□□ -2.02
VPS54Q9P1Q0 NRBF2P1-201ENST00000587407 859 ntBASIC2.41□□□□□ -2.02
VPS54Q9P1Q0 AC008521.1-201ENST00000587471 187 ntBASIC2.41□□□□□ -2.02
VPS54Q9P1Q0 AC119751.7-201ENST00000600494 245 ntBASIC2.41□□□□□ -2.02
VPS54Q9P1Q0 HMGB1P24-202ENST00000615653 685 ntBASIC2.41□□□□□ -2.02
VPS54Q9P1Q0 MIR6134-201ENST00000617606 109 ntBASIC2.41□□□□□ -2.02
VPS54Q9P1Q0 Z69908.1-201ENST00000622603 247 ntBASIC2.41□□□□□ -2.02
VPS54Q9P1Q0 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC2.4□□□□□ -2.02
VPS54Q9P1Q0 ESF1-202ENST00000617257 1470 ntTSL 5 BASIC2.4□□□□□ -2.02
VPS54Q9P1Q0 ELL2P3-201ENST00000457883 1602 ntBASIC2.4□□□□□ -2.03
VPS54Q9P1Q0 GSTA3-201ENST00000211122 902 ntAPPRIS P1 TSL 1 (best) BASIC2.4□□□□□ -2.03
VPS54Q9P1Q0 RNU6-1280P-201ENST00000365211 107 ntBASIC2.4□□□□□ -2.03
VPS54Q9P1Q0 MIR518D-201ENST00000385014 87 ntBASIC2.4□□□□□ -2.03
VPS54Q9P1Q0 MIR147B-201ENST00000390185 80 ntBASIC2.4□□□□□ -2.03
VPS54Q9P1Q0 RNA5SP111-201ENST00000411386 101 ntBASIC2.4□□□□□ -2.03
VPS54Q9P1Q0 AL031779.1-201ENST00000415663 330 ntBASIC2.4□□□□□ -2.03
VPS54Q9P1Q0 MTND3P17-201ENST00000416968 344 ntBASIC2.4□□□□□ -2.03
VPS54Q9P1Q0 C1DP2-201ENST00000418167 426 ntBASIC2.4□□□□□ -2.03
VPS54Q9P1Q0 AL121872.1-201ENST00000420327 281 ntTSL 5 BASIC2.4□□□□□ -2.03
VPS54Q9P1Q0 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC2.4□□□□□ -2.03
VPS54Q9P1Q0 DPH3P2-201ENST00000422618 250 ntBASIC2.4□□□□□ -2.03
VPS54Q9P1Q0 PTGES3P4-201ENST00000426243 356 ntBASIC2.4□□□□□ -2.03
VPS54Q9P1Q0 WARS2P1-201ENST00000429678 537 ntBASIC2.4□□□□□ -2.03
VPS54Q9P1Q0 AC025038.1-201ENST00000433249 336 ntTSL 3 BASIC2.4□□□□□ -2.03
VPS54Q9P1Q0 KCNJ6-AS1-201ENST00000435001 357 ntTSL 5 BASIC2.4□□□□□ -2.03
VPS54Q9P1Q0 FABP5P14-201ENST00000437273 393 ntBASIC2.4□□□□□ -2.03
VPS54Q9P1Q0 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC2.4□□□□□ -2.03
VPS54Q9P1Q0 AC004383.1-201ENST00000438135 289 ntBASIC2.4□□□□□ -2.03
VPS54Q9P1Q0 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC2.4□□□□□ -2.03
VPS54Q9P1Q0 AL583843.1-201ENST00000456070 346 ntBASIC2.4□□□□□ -2.03
VPS54Q9P1Q0 TRBV12-1-201ENST00000479785 344 ntBASIC2.4□□□□□ -2.03
VPS54Q9P1Q0 FSBP-201ENST00000481490 1158 ntTSL 1 (best) BASIC2.4□□□□□ -2.03
VPS54Q9P1Q0 LINC02377-202ENST00000505436 523 ntTSL 5 BASIC2.4□□□□□ -2.03
VPS54Q9P1Q0 AC117522.2-201ENST00000510049 657 ntBASIC2.4□□□□□ -2.03
VPS54Q9P1Q0 AC023824.2-201ENST00000566185 400 ntBASIC2.4□□□□□ -2.03
VPS54Q9P1Q0 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC2.4□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 132.9 ms