Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 AL512643.1-201ENST00000635735 524 ntBASIC2.44□□□□□ -2.02
CCDC28BQ9BUN5 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC2.44□□□□□ -2.02
CCDC28BQ9BUN5 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC2.44□□□□□ -2.02
CCDC28BQ9BUN5 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC2.44□□□□□ -2.02
CCDC28BQ9BUN5 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC2.43□□□□□ -2.02
CCDC28BQ9BUN5 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC2.43□□□□□ -2.02
CCDC28BQ9BUN5 AC008669.1-201ENST00000565823 2178 ntBASIC2.43□□□□□ -2.02
CCDC28BQ9BUN5 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC2.43□□□□□ -2.02
CCDC28BQ9BUN5 RNU6-552P-201ENST00000362869 119 ntBASIC2.43□□□□□ -2.02
CCDC28BQ9BUN5 RNU6-270P-201ENST00000364131 105 ntBASIC2.43□□□□□ -2.02
CCDC28BQ9BUN5 RNA5SP37-201ENST00000365420 130 ntBASIC2.43□□□□□ -2.02
CCDC28BQ9BUN5 RNU6-395P-201ENST00000365662 106 ntBASIC2.43□□□□□ -2.02
CCDC28BQ9BUN5 MIR34B-201ENST00000385076 84 ntBASIC2.43□□□□□ -2.02
CCDC28BQ9BUN5 CISD1P1-201ENST00000393907 327 ntBASIC2.43□□□□□ -2.02
CCDC28BQ9BUN5 CTNNA2-204ENST00000409266 432 ntTSL 3 BASIC2.43□□□□□ -2.02
CCDC28BQ9BUN5 AL136322.1-201ENST00000422250 548 ntTSL 4 BASIC2.43□□□□□ -2.02
CCDC28BQ9BUN5 RPL36AP53-201ENST00000432891 316 ntBASIC2.43□□□□□ -2.02
CCDC28BQ9BUN5 AC000111.3-201ENST00000433478 193 ntBASIC2.43□□□□□ -2.02
CCDC28BQ9BUN5 AL035258.1-201ENST00000439450 439 ntTSL 3 BASIC2.43□□□□□ -2.02
CCDC28BQ9BUN5 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC2.43□□□□□ -2.02
CCDC28BQ9BUN5 AL135938.1-201ENST00000443141 297 ntBASIC2.43□□□□□ -2.02
CCDC28BQ9BUN5 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC2.43□□□□□ -2.02
CCDC28BQ9BUN5 AL118520.1-201ENST00000450770 291 ntBASIC2.43□□□□□ -2.02
CCDC28BQ9BUN5 AC011753.1-201ENST00000451001 220 ntBASIC2.43□□□□□ -2.02
CCDC28BQ9BUN5 AC073326.1-201ENST00000451832 557 ntTSL 3 BASIC2.43□□□□□ -2.02
CCDC28BQ9BUN5 SNRPFP3-201ENST00000457792 225 ntBASIC2.43□□□□□ -2.02
CCDC28BQ9BUN5 RPL23AP70-201ENST00000483361 460 ntBASIC2.43□□□□□ -2.02
CCDC28BQ9BUN5 SUMO2P6-201ENST00000505273 288 ntBASIC2.43□□□□□ -2.02
CCDC28BQ9BUN5 RNA5SP165-201ENST00000517142 115 ntBASIC2.43□□□□□ -2.02
CCDC28BQ9BUN5 LINC02546-202ENST00000528119 801 ntTSL 5 BASIC2.43□□□□□ -2.02
CCDC28BQ9BUN5 AC007368.1-201ENST00000536422 974 ntTSL 5 BASIC2.43□□□□□ -2.02
CCDC28BQ9BUN5 AC121758.2-201ENST00000553271 193 ntBASIC2.43□□□□□ -2.02
CCDC28BQ9BUN5 AL157871.3-201ENST00000557231 293 ntBASIC2.43□□□□□ -2.02
CCDC28BQ9BUN5 AC020661.3-201ENST00000558101 414 ntTSL 3 BASIC2.43□□□□□ -2.02
CCDC28BQ9BUN5 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC2.43□□□□□ -2.02
CCDC28BQ9BUN5 AC103810.1-201ENST00000579873 453 ntBASIC2.43□□□□□ -2.02
CCDC28BQ9BUN5 AC090616.3-201ENST00000582184 217 ntBASIC2.43□□□□□ -2.02
CCDC28BQ9BUN5 AL670379.4-201ENST00000605279 254 ntBASIC2.43□□□□□ -2.02
CCDC28BQ9BUN5 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC2.43□□□□□ -2.02
CCDC28BQ9BUN5 AL160394.1-201ENST00000624765 724 ntBASIC2.43□□□□□ -2.02
CCDC28BQ9BUN5 FER-210ENST00000628534 558 ntTSL 5 BASIC2.43□□□□□ -2.02
CCDC28BQ9BUN5 MIR3688-2-201ENST00000636963 87 ntBASIC2.43□□□□□ -2.02
CCDC28BQ9BUN5 AP3S1-209ENST00000640413 489 ntTSL 5 BASIC2.43□□□□□ -2.02
CCDC28BQ9BUN5 MTND4P14-201ENST00000435799 1354 ntBASIC2.43□□□□□ -2.02
CCDC28BQ9BUN5 AC010680.1-201ENST00000590024 3590 ntBASIC2.43□□□□□ -2.02
CCDC28BQ9BUN5 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC2.43□□□□□ -2.02
CCDC28BQ9BUN5 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC2.42□□□□□ -2.02
CCDC28BQ9BUN5 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC2.42□□□□□ -2.02
CCDC28BQ9BUN5 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC2.42□□□□□ -2.02
CCDC28BQ9BUN5 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC2.42□□□□□ -2.02
CCDC28BQ9BUN5 MTND5P1-201ENST00000445440 1375 ntBASIC2.42□□□□□ -2.02
CCDC28BQ9BUN5 SNORA4.3-201ENST00000365564 137 ntBASIC2.42□□□□□ -2.02
CCDC28BQ9BUN5 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC2.42□□□□□ -2.02
CCDC28BQ9BUN5 BTF3P7-201ENST00000407097 488 ntBASIC2.42□□□□□ -2.02
CCDC28BQ9BUN5 RNU6-908P-201ENST00000410160 94 ntBASIC2.42□□□□□ -2.02
CCDC28BQ9BUN5 RNA5SP111-201ENST00000411386 101 ntBASIC2.42□□□□□ -2.02
CCDC28BQ9BUN5 AL158840.1-201ENST00000414132 523 ntTSL 3 BASIC2.42□□□□□ -2.02
CCDC28BQ9BUN5 MTCYBP8-201ENST00000422855 651 ntBASIC2.42□□□□□ -2.02
CCDC28BQ9BUN5 MTCO1P20-201ENST00000425366 358 ntBASIC2.42□□□□□ -2.02
CCDC28BQ9BUN5 YME1L1P1-201ENST00000429435 297 ntBASIC2.42□□□□□ -2.02
CCDC28BQ9BUN5 USP9YP28-201ENST00000435142 589 ntBASIC2.42□□□□□ -2.02
CCDC28BQ9BUN5 CALM1P1-201ENST00000442082 433 ntBASIC2.42□□□□□ -2.02
CCDC28BQ9BUN5 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC2.42□□□□□ -2.02
CCDC28BQ9BUN5 AC092567.1-201ENST00000452397 251 ntTSL 3 BASIC2.42□□□□□ -2.02
CCDC28BQ9BUN5 NDUFAF4P3-201ENST00000456468 525 ntBASIC2.42□□□□□ -2.02
CCDC28BQ9BUN5 AL121769.1-201ENST00000469473 401 ntBASIC2.42□□□□□ -2.02
CCDC28BQ9BUN5 HMGB3P3-201ENST00000510526 400 ntBASIC2.42□□□□□ -2.02
CCDC28BQ9BUN5 MEF2C-AS1-212ENST00000514158 713 ntTSL 5 BASIC2.42□□□□□ -2.02
CCDC28BQ9BUN5 LRRC34P2-201ENST00000514850 553 ntBASIC2.42□□□□□ -2.02
CCDC28BQ9BUN5 RNU6-928P-201ENST00000516876 104 ntBASIC2.42□□□□□ -2.02
CCDC28BQ9BUN5 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC2.42□□□□□ -2.02
CCDC28BQ9BUN5 SUB1P1-201ENST00000524415 382 ntBASIC2.42□□□□□ -2.02
CCDC28BQ9BUN5 HIF1AP1-201ENST00000553642 175 ntBASIC2.42□□□□□ -2.02
CCDC28BQ9BUN5 SNORA59B-202ENST00000578183 701 ntBASIC2.42□□□□□ -2.02
CCDC28BQ9BUN5 AL355598.1-201ENST00000604169 202 ntBASIC2.42□□□□□ -2.02
CCDC28BQ9BUN5 MIR8057-201ENST00000620957 69 ntBASIC2.42□□□□□ -2.02
CCDC28BQ9BUN5 YWHAEP7-203ENST00000622054 312 ntBASIC2.42□□□□□ -2.02
CCDC28BQ9BUN5 AC007405.1-203ENST00000623667 932 ntTSL 5 BASIC2.42□□□□□ -2.02
CCDC28BQ9BUN5 AC073308.1-201ENST00000623696 305 ntBASIC2.42□□□□□ -2.02
CCDC28BQ9BUN5 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC2.42□□□□□ -2.02
CCDC28BQ9BUN5 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC2.41□□□□□ -2.02
CCDC28BQ9BUN5 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC2.41□□□□□ -2.02
CCDC28BQ9BUN5 ZNF720P1-201ENST00000562403 1939 ntBASIC2.41□□□□□ -2.02
CCDC28BQ9BUN5 SNORD62.1-201ENST00000362541 86 ntBASIC2.41□□□□□ -2.02
CCDC28BQ9BUN5 Y_RNA.381-201ENST00000365666 102 ntBASIC2.41□□□□□ -2.02
CCDC28BQ9BUN5 RNU6-116P-201ENST00000384042 109 ntBASIC2.41□□□□□ -2.02
CCDC28BQ9BUN5 RNU6-301P-201ENST00000384277 107 ntBASIC2.41□□□□□ -2.02
CCDC28BQ9BUN5 SNORA41-201ENST00000384675 132 ntBASIC2.41□□□□□ -2.02
CCDC28BQ9BUN5 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC2.41□□□□□ -2.02
CCDC28BQ9BUN5 MIR1277-201ENST00000408536 78 ntBASIC2.41□□□□□ -2.02
CCDC28BQ9BUN5 RNU6-193P-201ENST00000410977 107 ntBASIC2.41□□□□□ -2.02
CCDC28BQ9BUN5 USP9YP6-201ENST00000413550 854 ntBASIC2.41□□□□□ -2.02
CCDC28BQ9BUN5 RPL26P27-201ENST00000414397 437 ntBASIC2.41□□□□□ -2.02
CCDC28BQ9BUN5 SNRPEP10-201ENST00000420249 274 ntBASIC2.41□□□□□ -2.02
CCDC28BQ9BUN5 AC099548.1-201ENST00000421443 426 ntBASIC2.41□□□□□ -2.02
CCDC28BQ9BUN5 WARS2P1-201ENST00000429678 537 ntBASIC2.41□□□□□ -2.02
CCDC28BQ9BUN5 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC2.41□□□□□ -2.02
CCDC28BQ9BUN5 AC078845.1-202ENST00000435996 733 ntTSL 3 BASIC2.41□□□□□ -2.02
CCDC28BQ9BUN5 AC092473.1-201ENST00000441098 221 ntBASIC2.41□□□□□ -2.02
CCDC28BQ9BUN5 BRK1P2-201ENST00000442875 223 ntBASIC2.41□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 88.2 ms