Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC2.2□□□□□ -2.06
VPS35Q96QK1 LINC02462-201ENST00000503009 430 ntTSL 5 BASIC2.2□□□□□ -2.06
VPS35Q96QK1 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC2.2□□□□□ -2.06
VPS35Q96QK1 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC2.2□□□□□ -2.06
VPS35Q96QK1 AC112206.3-201ENST00000514578 389 ntBASIC2.2□□□□□ -2.06
VPS35Q96QK1 RNU6-1220P-201ENST00000517126 108 ntBASIC2.2□□□□□ -2.06
VPS35Q96QK1 AC091996.1-201ENST00000522274 600 ntTSL 3 BASIC2.2□□□□□ -2.06
VPS35Q96QK1 IGHVIII-5-1-201ENST00000523059 99 ntBASIC2.2□□□□□ -2.06
VPS35Q96QK1 LRRC34P1-201ENST00000542742 915 ntBASIC2.2□□□□□ -2.06
VPS35Q96QK1 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC2.2□□□□□ -2.06
VPS35Q96QK1 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC2.2□□□□□ -2.06
VPS35Q96QK1 AC092325.1-201ENST00000566449 554 ntBASIC2.2□□□□□ -2.06
VPS35Q96QK1 MIR1273D-201ENST00000577266 86 ntBASIC2.2□□□□□ -2.06
VPS35Q96QK1 AC002115.1-201ENST00000589603 568 ntTSL 4 BASIC2.2□□□□□ -2.06
VPS35Q96QK1 BNIP3P8-201ENST00000597863 560 ntBASIC2.2□□□□□ -2.06
VPS35Q96QK1 DEFB131E-202ENST00000602581 683 ntBASIC2.2□□□□□ -2.06
VPS35Q96QK1 RNU6-91P-201ENST00000607774 107 ntBASIC2.2□□□□□ -2.06
VPS35Q96QK1 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC2.2□□□□□ -2.06
VPS35Q96QK1 AC092656.1-203ENST00000624134 423 ntBASIC2.2□□□□□ -2.06
VPS35Q96QK1 CKAP2P1-201ENST00000555477 2049 ntBASIC2.2□□□□□ -2.06
VPS35Q96QK1 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC2.2□□□□□ -2.06
VPS35Q96QK1 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC2.2□□□□□ -2.06
VPS35Q96QK1 RGS13-204ENST00000543215 1518 ntAPPRIS P1 TSL 1 (best) BASIC2.19□□□□□ -2.06
VPS35Q96QK1 RNU1-72P-201ENST00000362976 153 ntBASIC2.19□□□□□ -2.06
VPS35Q96QK1 RNY1P12-201ENST00000364251 105 ntBASIC2.19□□□□□ -2.06
VPS35Q96QK1 RNU1-91P-201ENST00000364746 163 ntBASIC2.19□□□□□ -2.06
VPS35Q96QK1 SNORA20.2-201ENST00000383922 131 ntBASIC2.19□□□□□ -2.06
VPS35Q96QK1 AC004543.1-201ENST00000418764 369 ntTSL 5 BASIC2.19□□□□□ -2.06
VPS35Q96QK1 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC2.19□□□□□ -2.06
VPS35Q96QK1 AC104850.1-201ENST00000435940 476 ntBASIC2.19□□□□□ -2.06
VPS35Q96QK1 AP000936.1-201ENST00000442124 483 ntTSL 5 BASIC2.19□□□□□ -2.06
VPS35Q96QK1 SATB1-AS1-204ENST00000453361 726 ntTSL 3 BASIC2.19□□□□□ -2.06
VPS35Q96QK1 AF213884.2-201ENST00000510417 903 ntBASIC2.19□□□□□ -2.06
VPS35Q96QK1 RNU2-46P-201ENST00000517038 113 ntBASIC2.19□□□□□ -2.06
VPS35Q96QK1 AC091544.4-201ENST00000555268 342 ntBASIC2.19□□□□□ -2.06
VPS35Q96QK1 MIR548AC-201ENST00000585049 88 ntBASIC2.19□□□□□ -2.06
VPS35Q96QK1 AC005771.1-201ENST00000585581 349 ntBASIC2.19□□□□□ -2.06
VPS35Q96QK1 AL138963.2-201ENST00000605137 226 ntBASIC2.19□□□□□ -2.06
VPS35Q96QK1 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC2.19□□□□□ -2.06
VPS35Q96QK1 AC009233.1-201ENST00000616477 371 ntBASIC2.19□□□□□ -2.06
VPS35Q96QK1 MIR6132-201ENST00000622083 109 ntBASIC2.19□□□□□ -2.06
VPS35Q96QK1 AC007494.3-201ENST00000624660 743 ntBASIC2.19□□□□□ -2.06
VPS35Q96QK1 AL160394.1-201ENST00000624765 724 ntBASIC2.19□□□□□ -2.06
VPS35Q96QK1 AL157786.1-207ENST00000627771 695 ntBASIC2.19□□□□□ -2.06
VPS35Q96QK1 AC138393.1-203ENST00000327086 343 ntBASIC2.18□□□□□ -2.06
VPS35Q96QK1 RNU6-858P-201ENST00000362436 107 ntBASIC2.18□□□□□ -2.06
VPS35Q96QK1 SNORA3A-201ENST00000364113 130 ntBASIC2.18□□□□□ -2.06
VPS35Q96QK1 RNA5SP126-201ENST00000365092 109 ntBASIC2.18□□□□□ -2.06
VPS35Q96QK1 AL355497.1-201ENST00000406262 551 ntBASIC2.18□□□□□ -2.06
VPS35Q96QK1 RN7SKP192-201ENST00000411291 327 ntBASIC2.18□□□□□ -2.06
VPS35Q96QK1 AC127391.1-201ENST00000411737 98 ntBASIC2.18□□□□□ -2.06
VPS35Q96QK1 Z98742.3-201ENST00000418637 326 ntBASIC2.18□□□□□ -2.06
VPS35Q96QK1 AL627311.1-201ENST00000431514 115 ntBASIC2.18□□□□□ -2.06
VPS35Q96QK1 RPL7P34-201ENST00000433316 712 ntBASIC2.18□□□□□ -2.06
VPS35Q96QK1 AC090515.1-201ENST00000465295 476 ntBASIC2.18□□□□□ -2.06
VPS35Q96QK1 RPL7P43-201ENST00000478876 753 ntBASIC2.18□□□□□ -2.06
VPS35Q96QK1 AC068781.1-201ENST00000488231 618 ntBASIC2.18□□□□□ -2.06
VPS35Q96QK1 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC2.18□□□□□ -2.06
VPS35Q96QK1 SCARNA16.3-201ENST00000516595 184 ntBASIC2.18□□□□□ -2.06
VPS35Q96QK1 RNU5B-3P-201ENST00000516601 115 ntBASIC2.18□□□□□ -2.06
VPS35Q96QK1 MIR514B-201ENST00000516774 80 ntBASIC2.18□□□□□ -2.06
VPS35Q96QK1 Y_RNA.717-201ENST00000517106 92 ntBASIC2.18□□□□□ -2.06
VPS35Q96QK1 OR5AQ1P-201ENST00000527596 927 ntBASIC2.18□□□□□ -2.06
VPS35Q96QK1 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC2.18□□□□□ -2.06
VPS35Q96QK1 AC109446.2-201ENST00000567872 497 ntBASIC2.18□□□□□ -2.06
VPS35Q96QK1 MIR3915-201ENST00000578518 97 ntBASIC2.18□□□□□ -2.06
VPS35Q96QK1 AP005062.1-201ENST00000581502 607 ntTSL 3 BASIC2.18□□□□□ -2.06
VPS35Q96QK1 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC2.18□□□□□ -2.06
VPS35Q96QK1 C8orf59-209ENST00000612977 586 ntAPPRIS P1 TSL 2 BASIC2.18□□□□□ -2.06
VPS35Q96QK1 AL133173.2-201ENST00000614270 90 ntBASIC2.18□□□□□ -2.06
VPS35Q96QK1 AC091304.6-201ENST00000619761 202 ntBASIC2.18□□□□□ -2.06
VPS35Q96QK1 AP000553.5-201ENST00000641933 54 ntBASIC2.18□□□□□ -2.06
VPS35Q96QK1 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC2.18□□□□□ -2.06
VPS35Q96QK1 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC2.18□□□□□ -2.06
VPS35Q96QK1 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC2.17□□□□□ -2.06
VPS35Q96QK1 MDM2-207ENST00000360430 891 ntTSL 1 (best) BASIC2.17□□□□□ -2.06
VPS35Q96QK1 U8.3-201ENST00000363321 132 ntBASIC2.17□□□□□ -2.06
VPS35Q96QK1 SNORD14B-201ENST00000364533 90 ntBASIC2.17□□□□□ -2.06
VPS35Q96QK1 MIR10A-201ENST00000385043 110 ntBASIC2.17□□□□□ -2.06
VPS35Q96QK1 BCL2L15-203ENST00000393320 276 ntTSL 1 (best) BASIC2.17□□□□□ -2.06
VPS35Q96QK1 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC2.17□□□□□ -2.06
VPS35Q96QK1 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC2.17□□□□□ -2.06
VPS35Q96QK1 RN7SKP223-201ENST00000410582 62 ntBASIC2.17□□□□□ -2.06
VPS35Q96QK1 RNU2-63P-201ENST00000410792 194 ntBASIC2.17□□□□□ -2.06
VPS35Q96QK1 RPS3AP3-201ENST00000411933 242 ntBASIC2.17□□□□□ -2.06
VPS35Q96QK1 AL031779.1-201ENST00000415663 330 ntBASIC2.17□□□□□ -2.06
VPS35Q96QK1 NPM1P11-201ENST00000417106 855 ntBASIC2.17□□□□□ -2.06
VPS35Q96QK1 LURAP1L-AS1-201ENST00000417638 799 ntTSL 3 BASIC2.17□□□□□ -2.06
VPS35Q96QK1 CYCSP46-201ENST00000423569 204 ntBASIC2.17□□□□□ -2.06
VPS35Q96QK1 EIF4EP4-201ENST00000424916 578 ntBASIC2.17□□□□□ -2.06
VPS35Q96QK1 AL135908.1-201ENST00000431394 446 ntTSL 3 BASIC2.17□□□□□ -2.06
VPS35Q96QK1 NDUFB1P2-201ENST00000449477 176 ntBASIC2.17□□□□□ -2.06
VPS35Q96QK1 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC2.17□□□□□ -2.06
VPS35Q96QK1 MED28P2-201ENST00000475771 317 ntBASIC2.17□□□□□ -2.06
VPS35Q96QK1 LINC02064-202ENST00000507876 403 ntTSL 5 BASIC2.17□□□□□ -2.06
VPS35Q96QK1 SCARNA24.1-201ENST00000516465 137 ntBASIC2.17□□□□□ -2.06
VPS35Q96QK1 FAM92A1P1-201ENST00000528023 890 ntBASIC2.17□□□□□ -2.06
VPS35Q96QK1 AC135279.1-201ENST00000543493 504 ntBASIC2.17□□□□□ -2.06
VPS35Q96QK1 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC2.17□□□□□ -2.06
VPS35Q96QK1 AC008741.1-201ENST00000569456 510 ntTSL 3 BASIC2.17□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 80.1 ms