Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC1.2□□□□□ -2.22
CCDC42Q96M95 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.2□□□□□ -2.22
CCDC42Q96M95 RNU6-744P-201ENST00000365557 107 ntBASIC1.19□□□□□ -2.22
CCDC42Q96M95 RNU6-439P-201ENST00000384188 106 ntBASIC1.19□□□□□ -2.22
CCDC42Q96M95 RNU6-1316P-201ENST00000384242 108 ntBASIC1.19□□□□□ -2.22
CCDC42Q96M95 RNA5SP213-201ENST00000391031 106 ntBASIC1.19□□□□□ -2.22
CCDC42Q96M95 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.19□□□□□ -2.22
CCDC42Q96M95 ZNF385D-AS2-201ENST00000436306 424 ntTSL 5 BASIC1.19□□□□□ -2.22
CCDC42Q96M95 AC003991.1-202ENST00000447058 777 ntTSL 3 BASIC1.19□□□□□ -2.22
CCDC42Q96M95 ELOCP30-201ENST00000447108 299 ntBASIC1.19□□□□□ -2.22
CCDC42Q96M95 AC245517.4-201ENST00000448601 281 ntBASIC1.19□□□□□ -2.22
CCDC42Q96M95 AC009474.2-201ENST00000451383 136 ntBASIC1.19□□□□□ -2.22
CCDC42Q96M95 AL121594.1-201ENST00000475906 575 ntBASIC1.19□□□□□ -2.22
CCDC42Q96M95 AC104629.1-201ENST00000494226 508 ntBASIC1.19□□□□□ -2.22
CCDC42Q96M95 YWHAEP4-201ENST00000505390 198 ntBASIC1.19□□□□□ -2.22
CCDC42Q96M95 RNU2-53P-201ENST00000516257 147 ntBASIC1.19□□□□□ -2.22
CCDC42Q96M95 AC109329.1-201ENST00000518744 317 ntBASIC1.19□□□□□ -2.22
CCDC42Q96M95 AC126365.2-201ENST00000580630 379 ntBASIC1.19□□□□□ -2.22
CCDC42Q96M95 VN1R87P-201ENST00000596706 487 ntBASIC1.19□□□□□ -2.22
CCDC42Q96M95 AC098483.2-201ENST00000603158 454 ntBASIC1.19□□□□□ -2.22
CCDC42Q96M95 AC023158.2-201ENST00000614876 543 ntBASIC1.19□□□□□ -2.22
CCDC42Q96M95 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC1.19□□□□□ -2.22
CCDC42Q96M95 RNU6-1010P-201ENST00000362757 107 ntBASIC1.18□□□□□ -2.22
CCDC42Q96M95 RNU6-236P-201ENST00000363886 106 ntBASIC1.18□□□□□ -2.22
CCDC42Q96M95 SNORA17.3-201ENST00000391159 129 ntBASIC1.18□□□□□ -2.22
CCDC42Q96M95 RNU4-62P-201ENST00000410125 130 ntBASIC1.18□□□□□ -2.22
CCDC42Q96M95 AL157786.1-206ENST00000424422 551 ntTSL 3 BASIC1.18□□□□□ -2.22
CCDC42Q96M95 AC092648.1-201ENST00000425870 423 ntBASIC1.18□□□□□ -2.22
CCDC42Q96M95 TRAPPC2P8-201ENST00000440676 396 ntBASIC1.18□□□□□ -2.22
CCDC42Q96M95 TRAPPC2P3-201ENST00000443200 321 ntBASIC1.18□□□□□ -2.22
CCDC42Q96M95 AL096829.2-201ENST00000446582 742 ntBASIC1.18□□□□□ -2.22
CCDC42Q96M95 AC104058.1-201ENST00000448028 297 ntBASIC1.18□□□□□ -2.22
CCDC42Q96M95 AL135787.1-201ENST00000450154 302 ntTSL 3 BASIC1.18□□□□□ -2.22
CCDC42Q96M95 MAST4-AS1-201ENST00000451496 777 ntTSL 2 BASIC1.18□□□□□ -2.22
CCDC42Q96M95 snoU13.9-201ENST00000458927 103 ntBASIC1.18□□□□□ -2.22
CCDC42Q96M95 RN7SL429P-201ENST00000479090 223 ntBASIC1.18□□□□□ -2.22
CCDC42Q96M95 RN7SL489P-201ENST00000486185 223 ntBASIC1.18□□□□□ -2.22
CCDC42Q96M95 RN7SL327P-201ENST00000488659 223 ntBASIC1.18□□□□□ -2.22
CCDC42Q96M95 AC093852.1-201ENST00000503587 266 ntBASIC1.18□□□□□ -2.22
CCDC42Q96M95 LAMTOR3P2-201ENST00000504479 232 ntBASIC1.18□□□□□ -2.22
CCDC42Q96M95 CCNG1-203ENST00000504553 732 ntTSL 3 BASIC1.18□□□□□ -2.22
CCDC42Q96M95 RPF2P2-201ENST00000504693 896 ntBASIC1.18□□□□□ -2.22
CCDC42Q96M95 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC1.18□□□□□ -2.22
CCDC42Q96M95 AC009902.1-201ENST00000519351 183 ntBASIC1.18□□□□□ -2.22
CCDC42Q96M95 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC1.18□□□□□ -2.22
CCDC42Q96M95 AC022616.8-201ENST00000533569 253 ntBASIC1.18□□□□□ -2.22
CCDC42Q96M95 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC1.18□□□□□ -2.22
CCDC42Q96M95 AP005433.1-201ENST00000582939 620 ntTSL 2 BASIC1.18□□□□□ -2.22
CCDC42Q96M95 RN7SL853P-201ENST00000617250 223 ntBASIC1.18□□□□□ -2.22
CCDC42Q96M95 AC078880.5-201ENST00000617845 421 ntBASIC1.18□□□□□ -2.22
CCDC42Q96M95 AP000676.3-201ENST00000623299 569 ntBASIC1.18□□□□□ -2.22
CCDC42Q96M95 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC1.18□□□□□ -2.22
CCDC42Q96M95 SLC25A46-206ENST00000509432 1596 ntTSL 2 BASIC1.17□□□□□ -2.22
CCDC42Q96M95 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.17□□□□□ -2.22
CCDC42Q96M95 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.17□□□□□ -2.22
CCDC42Q96M95 C8orf59-201ENST00000321777 325 ntTSL 1 (best) BASIC1.17□□□□□ -2.22
CCDC42Q96M95 RNU6-288P-201ENST00000363690 104 ntBASIC1.17□□□□□ -2.22
CCDC42Q96M95 RNU6-1274P-201ENST00000384557 107 ntBASIC1.17□□□□□ -2.22
CCDC42Q96M95 MIR513A1-201ENST00000385138 129 ntBASIC1.17□□□□□ -2.22
CCDC42Q96M95 MRPS36P1-201ENST00000421291 307 ntBASIC1.17□□□□□ -2.22
CCDC42Q96M95 AL023581.1-201ENST00000423500 455 ntTSL 2 BASIC1.17□□□□□ -2.22
CCDC42Q96M95 AL024474.2-201ENST00000431309 501 ntTSL 3 BASIC1.17□□□□□ -2.22
CCDC42Q96M95 AL591806.2-201ENST00000433122 173 ntBASIC1.17□□□□□ -2.22
CCDC42Q96M95 AL121890.1-201ENST00000435457 205 ntBASIC1.17□□□□□ -2.22
CCDC42Q96M95 MTCO1P44-201ENST00000441935 243 ntBASIC1.17□□□□□ -2.22
CCDC42Q96M95 AL357793.2-201ENST00000447056 850 ntTSL 3 BASIC1.17□□□□□ -2.22
CCDC42Q96M95 RNU7-95P-201ENST00000459222 64 ntBASIC1.17□□□□□ -2.22
CCDC42Q96M95 AC106821.1-201ENST00000502861 572 ntTSL 5 BASIC1.17□□□□□ -2.22
CCDC42Q96M95 AC025465.3-201ENST00000510570 311 ntBASIC1.17□□□□□ -2.22
CCDC42Q96M95 RNA5SP445-201ENST00000515889 115 ntBASIC1.17□□□□□ -2.22
CCDC42Q96M95 RNU6-572P-201ENST00000516724 80 ntBASIC1.17□□□□□ -2.22
CCDC42Q96M95 RNU6-902P-201ENST00000517212 91 ntBASIC1.17□□□□□ -2.22
CCDC42Q96M95 AC104417.1-201ENST00000523974 751 ntBASIC1.17□□□□□ -2.22
CCDC42Q96M95 LINC01493-203ENST00000534756 509 ntTSL 3 BASIC1.17□□□□□ -2.22
CCDC42Q96M95 AC060771.1-201ENST00000582031 164 ntBASIC1.17□□□□□ -2.22
CCDC42Q96M95 SOX2-OT-224ENST00000595313 716 ntTSL 5 BASIC1.17□□□□□ -2.22
CCDC42Q96M95 AC004987.4-201ENST00000603383 338 ntBASIC1.17□□□□□ -2.22
CCDC42Q96M95 AC090970.3-201ENST00000612566 866 ntBASIC1.17□□□□□ -2.22
CCDC42Q96M95 AL353770.2-201ENST00000620024 78 ntBASIC1.17□□□□□ -2.22
CCDC42Q96M95 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC1.17□□□□□ -2.22
CCDC42Q96M95 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.17□□□□□ -2.22
CCDC42Q96M95 AC092125.1-201ENST00000562568 1995 ntBASIC1.16□□□□□ -2.22
CCDC42Q96M95 MIR186-201ENST00000384988 86 ntBASIC1.16□□□□□ -2.22
CCDC42Q96M95 FTH1P15-201ENST00000406984 280 ntBASIC1.16□□□□□ -2.22
CCDC42Q96M95 MRPL35P3-201ENST00000421557 364 ntBASIC1.16□□□□□ -2.22
CCDC42Q96M95 LINC00387-201ENST00000422609 458 ntTSL 5 BASIC1.16□□□□□ -2.22
CCDC42Q96M95 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC1.16□□□□□ -2.22
CCDC42Q96M95 TOMM22P2-201ENST00000430735 237 ntBASIC1.16□□□□□ -2.22
CCDC42Q96M95 RSL24D1P8-201ENST00000434442 492 ntBASIC1.16□□□□□ -2.22
CCDC42Q96M95 CHODL-AS1-201ENST00000447175 1117 ntTSL 2 BASIC1.16□□□□□ -2.22
CCDC42Q96M95 AC024589.1-201ENST00000512207 263 ntBASIC1.16□□□□□ -2.22
CCDC42Q96M95 RNVU1-2-201ENST00000516326 135 ntBASIC1.16□□□□□ -2.22
CCDC42Q96M95 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC1.16□□□□□ -2.22
CCDC42Q96M95 AC104248.1-202ENST00000524134 486 ntTSL 5 BASIC1.16□□□□□ -2.22
CCDC42Q96M95 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC1.16□□□□□ -2.22
CCDC42Q96M95 MIR3912-201ENST00000577566 105 ntBASIC1.16□□□□□ -2.22
CCDC42Q96M95 AC097468.3-201ENST00000607956 456 ntBASIC1.16□□□□□ -2.22
CCDC42Q96M95 AC004908.3-201ENST00000610248 625 ntBASIC1.16□□□□□ -2.22
CCDC42Q96M95 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC1.16□□□□□ -2.22
CCDC42Q96M95 AL391597.2-201ENST00000635698 479 ntTSL 5 BASIC1.16□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 102.9 ms