Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 SNRPGP18-201ENST00000553000 214 ntBASIC1.92□□□□□ -2.1
CCDC54Q8NEL0 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC1.92□□□□□ -2.1
CCDC54Q8NEL0 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
CCDC54Q8NEL0 AP005136.1-201ENST00000579765 429 ntBASIC1.92□□□□□ -2.1
CCDC54Q8NEL0 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC1.92□□□□□ -2.1
CCDC54Q8NEL0 MIR3162-201ENST00000581818 82 ntBASIC1.92□□□□□ -2.1
CCDC54Q8NEL0 AC008749.1-201ENST00000597650 306 ntBASIC1.92□□□□□ -2.1
CCDC54Q8NEL0 AC011939.3-201ENST00000613686 466 ntBASIC1.92□□□□□ -2.1
CCDC54Q8NEL0 AC136475.10-201ENST00000620253 385 ntBASIC1.92□□□□□ -2.1
CCDC54Q8NEL0 AL162373.1-201ENST00000620433 407 ntBASIC1.92□□□□□ -2.1
CCDC54Q8NEL0 AC024940.5-201ENST00000622889 474 ntBASIC1.92□□□□□ -2.1
CCDC54Q8NEL0 AC244517.5-202ENST00000623741 500 ntTSL 3 BASIC1.92□□□□□ -2.1
CCDC54Q8NEL0 AL359740.1-201ENST00000624340 592 ntBASIC1.92□□□□□ -2.1
CCDC54Q8NEL0 AL157786.1-207ENST00000627771 695 ntBASIC1.92□□□□□ -2.1
CCDC54Q8NEL0 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC1.92□□□□□ -2.1
CCDC54Q8NEL0 ESF1-202ENST00000617257 1470 ntTSL 5 BASIC1.92□□□□□ -2.1
CCDC54Q8NEL0 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC1.92□□□□□ -2.1
CCDC54Q8NEL0 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC1.92□□□□□ -2.1
CCDC54Q8NEL0 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC1.91□□□□□ -2.1
CCDC54Q8NEL0 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC1.91□□□□□ -2.1
CCDC54Q8NEL0 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC1.91□□□□□ -2.1
CCDC54Q8NEL0 AC073343.1-201ENST00000328239 651 ntBASIC1.91□□□□□ -2.1
CCDC54Q8NEL0 Y_RNA.33-201ENST00000362591 102 ntBASIC1.91□□□□□ -2.1
CCDC54Q8NEL0 Y_RNA.367-201ENST00000365544 101 ntBASIC1.91□□□□□ -2.1
CCDC54Q8NEL0 RNU6-348P-201ENST00000384386 107 ntBASIC1.91□□□□□ -2.1
CCDC54Q8NEL0 RNY3P10-201ENST00000384764 102 ntBASIC1.91□□□□□ -2.1
CCDC54Q8NEL0 ZNF705D-201ENST00000400078 925 ntAPPRIS P1 TSL 2 BASIC1.91□□□□□ -2.1
CCDC54Q8NEL0 MRPL42P2-201ENST00000403169 426 ntBASIC1.91□□□□□ -2.1
CCDC54Q8NEL0 NDUFB4P4-201ENST00000404822 243 ntBASIC1.91□□□□□ -2.1
CCDC54Q8NEL0 FTH1P15-201ENST00000406984 280 ntBASIC1.91□□□□□ -2.1
CCDC54Q8NEL0 RNU2-39P-201ENST00000410604 198 ntBASIC1.91□□□□□ -2.1
CCDC54Q8NEL0 AC127391.1-201ENST00000411737 98 ntBASIC1.91□□□□□ -2.1
CCDC54Q8NEL0 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC1.91□□□□□ -2.1
CCDC54Q8NEL0 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC1.91□□□□□ -2.1
CCDC54Q8NEL0 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC1.91□□□□□ -2.1
CCDC54Q8NEL0 AC006366.1-201ENST00000422002 759 ntBASIC1.91□□□□□ -2.1
CCDC54Q8NEL0 AL162726.4-201ENST00000422010 673 ntTSL 5 BASIC1.91□□□□□ -2.1
CCDC54Q8NEL0 AL157884.2-201ENST00000424177 551 ntTSL 3 BASIC1.91□□□□□ -2.1
CCDC54Q8NEL0 EIF4EP4-201ENST00000424916 578 ntBASIC1.91□□□□□ -2.1
CCDC54Q8NEL0 AL592466.1-201ENST00000428346 307 ntTSL 5 BASIC1.91□□□□□ -2.1
CCDC54Q8NEL0 AL135908.1-201ENST00000431394 446 ntTSL 3 BASIC1.91□□□□□ -2.1
CCDC54Q8NEL0 Z98742.2-201ENST00000431564 187 ntBASIC1.91□□□□□ -2.1
CCDC54Q8NEL0 RPL23AP83-201ENST00000434984 473 ntBASIC1.91□□□□□ -2.1
CCDC54Q8NEL0 AC073614.1-201ENST00000438690 650 ntBASIC1.91□□□□□ -2.1
CCDC54Q8NEL0 AL078601.1-201ENST00000444542 271 ntBASIC1.91□□□□□ -2.1
CCDC54Q8NEL0 MTND2P4-201ENST00000445034 1004 ntBASIC1.91□□□□□ -2.1
CCDC54Q8NEL0 USP9YP29-201ENST00000445112 563 ntBASIC1.91□□□□□ -2.1
CCDC54Q8NEL0 LINC01813-201ENST00000451034 712 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
CCDC54Q8NEL0 AC108938.1-201ENST00000451204 136 ntBASIC1.91□□□□□ -2.1
CCDC54Q8NEL0 FABP5P13-201ENST00000452144 328 ntBASIC1.91□□□□□ -2.1
CCDC54Q8NEL0 AC055764.1-201ENST00000454526 473 ntTSL 3 BASIC1.91□□□□□ -2.1
CCDC54Q8NEL0 AC023194.1-201ENST00000493084 308 ntBASIC1.91□□□□□ -2.1
CCDC54Q8NEL0 AC026801.1-201ENST00000497178 464 ntBASIC1.91□□□□□ -2.1
CCDC54Q8NEL0 GZMAP1-201ENST00000503054 631 ntBASIC1.91□□□□□ -2.1
CCDC54Q8NEL0 AC079349.1-201ENST00000509096 589 ntTSL 2 BASIC1.91□□□□□ -2.1
CCDC54Q8NEL0 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC1.91□□□□□ -2.1
CCDC54Q8NEL0 AC118465.1-201ENST00000513820 1271 ntBASIC1.91□□□□□ -2.1
CCDC54Q8NEL0 SNORA25.11-201ENST00000515935 105 ntBASIC1.91□□□□□ -2.1
CCDC54Q8NEL0 RNU1-86P-201ENST00000516108 154 ntBASIC1.91□□□□□ -2.1
CCDC54Q8NEL0 RNU1-107P-201ENST00000516617 154 ntBASIC1.91□□□□□ -2.1
CCDC54Q8NEL0 ACA59.2-201ENST00000517061 156 ntBASIC1.91□□□□□ -2.1
CCDC54Q8NEL0 AP001646.1-201ENST00000527936 915 ntBASIC1.91□□□□□ -2.1
CCDC54Q8NEL0 AC234778.2-201ENST00000566241 354 ntBASIC1.91□□□□□ -2.1
CCDC54Q8NEL0 AC069061.2-202ENST00000580280 357 ntTSL 3 BASIC1.91□□□□□ -2.1
CCDC54Q8NEL0 MIR3200-201ENST00000580767 85 ntBASIC1.91□□□□□ -2.1
CCDC54Q8NEL0 MIR3199-1-201ENST00000582434 88 ntBASIC1.91□□□□□ -2.1
CCDC54Q8NEL0 AP005057.1-201ENST00000583827 574 ntTSL 4 BASIC1.91□□□□□ -2.1
CCDC54Q8NEL0 AC097467.3-205ENST00000597955 594 ntTSL 5 BASIC1.91□□□□□ -2.1
CCDC54Q8NEL0 AL133173.2-201ENST00000614270 90 ntBASIC1.91□□□□□ -2.1
CCDC54Q8NEL0 AC024581.2-201ENST00000619986 252 ntBASIC1.91□□□□□ -2.1
CCDC54Q8NEL0 FRG1KP-201ENST00000623592 341 ntBASIC1.91□□□□□ -2.1
CCDC54Q8NEL0 AL353651.2-201ENST00000635706 559 ntTSL 5 BASIC1.91□□□□□ -2.1
CCDC54Q8NEL0 TBC1D15-210ENST00000485960 2489 ntAPPRIS P1 TSL 1 (best) BASIC1.91□□□□□ -2.1
CCDC54Q8NEL0 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC1.9□□□□□ -2.1
CCDC54Q8NEL0 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC1.9□□□□□ -2.1
CCDC54Q8NEL0 TEX21P-201ENST00000447107 1476 ntBASIC1.9□□□□□ -2.11
CCDC54Q8NEL0 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC1.9□□□□□ -2.11
CCDC54Q8NEL0 RNU6-525P-201ENST00000363685 104 ntBASIC1.9□□□□□ -2.11
CCDC54Q8NEL0 SNORD14B-201ENST00000364533 90 ntBASIC1.9□□□□□ -2.11
CCDC54Q8NEL0 OR5H15-201ENST00000383696 930 ntBASIC1.9□□□□□ -2.11
CCDC54Q8NEL0 RNU6-1083P-201ENST00000384022 107 ntBASIC1.9□□□□□ -2.11
CCDC54Q8NEL0 Y_RNA.576-201ENST00000384781 102 ntBASIC1.9□□□□□ -2.11
CCDC54Q8NEL0 MIR301A-201ENST00000385261 86 ntBASIC1.9□□□□□ -2.11
CCDC54Q8NEL0 SNORA11-201ENST00000408789 128 ntBASIC1.9□□□□□ -2.11
CCDC54Q8NEL0 RNA5SP338-201ENST00000410495 85 ntBASIC1.9□□□□□ -2.11
CCDC54Q8NEL0 RNU6-1140P-201ENST00000410517 106 ntBASIC1.9□□□□□ -2.11
CCDC54Q8NEL0 AL033528.1-201ENST00000453780 140 ntBASIC1.9□□□□□ -2.11
CCDC54Q8NEL0 RNA5SP269-201ENST00000459032 137 ntBASIC1.9□□□□□ -2.11
CCDC54Q8NEL0 LINC02077-201ENST00000465795 409 ntTSL 3 BASIC1.9□□□□□ -2.11
CCDC54Q8NEL0 AC093292.1-201ENST00000505050 449 ntTSL 3 BASIC1.9□□□□□ -2.11
CCDC54Q8NEL0 MTCO3P9-201ENST00000506989 781 ntBASIC1.9□□□□□ -2.11
CCDC54Q8NEL0 LINC02174-201ENST00000508977 553 ntTSL 3 BASIC1.9□□□□□ -2.11
CCDC54Q8NEL0 Vault.3-201ENST00000516676 95 ntBASIC1.9□□□□□ -2.11
CCDC54Q8NEL0 RNU1-40P-201ENST00000516816 164 ntBASIC1.9□□□□□ -2.11
CCDC54Q8NEL0 RNU1-97P-201ENST00000516872 164 ntBASIC1.9□□□□□ -2.11
CCDC54Q8NEL0 RNU6-685P-201ENST00000517088 95 ntBASIC1.9□□□□□ -2.11
CCDC54Q8NEL0 SMIM18-201ENST00000517349 905 ntAPPRIS P1 TSL 2 BASIC1.9□□□□□ -2.11
CCDC54Q8NEL0 AC090796.1-201ENST00000520370 567 ntTSL 4 BASIC1.9□□□□□ -2.11
CCDC54Q8NEL0 LINC00933-203ENST00000559812 219 ntBASIC1.9□□□□□ -2.11
CCDC54Q8NEL0 MIR4782-201ENST00000577987 79 ntBASIC1.9□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 99.1 ms