Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AL445435.1-201ENST00000604232 665 ntBASIC1.26□□□□□ -2.21
CCDC88AQ3V6T2 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC1.26□□□□□ -2.21
CCDC88AQ3V6T2 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC1.26□□□□□ -2.21
CCDC88AQ3V6T2 NACAP2-201ENST00000318548 624 ntBASIC1.26□□□□□ -2.21
CCDC88AQ3V6T2 AC064852.1-201ENST00000427571 851 ntTSL 3 BASIC1.26□□□□□ -2.21
CCDC88AQ3V6T2 HMGN1P33-201ENST00000432945 451 ntBASIC1.26□□□□□ -2.21
CCDC88AQ3V6T2 RSL24D1P8-201ENST00000434442 492 ntBASIC1.26□□□□□ -2.21
CCDC88AQ3V6T2 AL583843.1-201ENST00000456070 346 ntBASIC1.26□□□□□ -2.21
CCDC88AQ3V6T2 AC093895.1-203ENST00000506814 591 ntTSL 5 BASIC1.26□□□□□ -2.21
CCDC88AQ3V6T2 RNA5SP137-201ENST00000516833 135 ntBASIC1.26□□□□□ -2.21
CCDC88AQ3V6T2 OR5AL2P-201ENST00000532185 920 ntBASIC1.26□□□□□ -2.21
CCDC88AQ3V6T2 AC023394.2-201ENST00000581987 792 ntTSL 5 BASIC1.26□□□□□ -2.21
CCDC88AQ3V6T2 AC107075.1-201ENST00000613695 314 ntBASIC1.26□□□□□ -2.21
CCDC88AQ3V6T2 C4orf22-209ENST00000621014 228 ntTSL 3 BASIC1.26□□□□□ -2.21
CCDC88AQ3V6T2 EDDM3A-201ENST00000326842 927 ntAPPRIS P1 TSL 1 (best) BASIC1.25□□□□□ -2.21
CCDC88AQ3V6T2 MIR126-201ENST00000362291 85 ntBASIC1.25□□□□□ -2.21
CCDC88AQ3V6T2 RNU6-792P-201ENST00000363490 107 ntBASIC1.25□□□□□ -2.21
CCDC88AQ3V6T2 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC1.25□□□□□ -2.21
CCDC88AQ3V6T2 MTCYBP38-201ENST00000417160 1123 ntBASIC1.25□□□□□ -2.21
CCDC88AQ3V6T2 TIMM9P2-201ENST00000419324 266 ntBASIC1.25□□□□□ -2.21
CCDC88AQ3V6T2 EIF4EP4-201ENST00000424916 578 ntBASIC1.25□□□□□ -2.21
CCDC88AQ3V6T2 MTCO3P5-201ENST00000433620 714 ntBASIC1.25□□□□□ -2.21
CCDC88AQ3V6T2 ELOCP30-201ENST00000447108 299 ntBASIC1.25□□□□□ -2.21
CCDC88AQ3V6T2 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC1.25□□□□□ -2.21
CCDC88AQ3V6T2 AL008723.1-201ENST00000452181 590 ntTSL 5 BASIC1.25□□□□□ -2.21
CCDC88AQ3V6T2 TMEM212-IT1-201ENST00000456146 470 ntTSL 3 BASIC1.25□□□□□ -2.21
CCDC88AQ3V6T2 AC093852.1-201ENST00000503587 266 ntBASIC1.25□□□□□ -2.21
CCDC88AQ3V6T2 TMEM251P1-201ENST00000503717 318 ntBASIC1.25□□□□□ -2.21
CCDC88AQ3V6T2 AC026719.1-201ENST00000506059 456 ntTSL 3 BASIC1.25□□□□□ -2.21
CCDC88AQ3V6T2 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC1.25□□□□□ -2.21
CCDC88AQ3V6T2 AC024589.1-201ENST00000512207 263 ntBASIC1.25□□□□□ -2.21
CCDC88AQ3V6T2 RNU6-714P-201ENST00000516963 103 ntBASIC1.25□□□□□ -2.21
CCDC88AQ3V6T2 AC104417.1-201ENST00000523974 751 ntBASIC1.25□□□□□ -2.21
CCDC88AQ3V6T2 CBX3P8-201ENST00000532412 525 ntBASIC1.25□□□□□ -2.21
CCDC88AQ3V6T2 CBX3P7-201ENST00000532876 502 ntBASIC1.25□□□□□ -2.21
CCDC88AQ3V6T2 AC005832.3-201ENST00000537929 631 ntBASIC1.25□□□□□ -2.21
CCDC88AQ3V6T2 SNORD14A-201ENST00000606526 91 ntBASIC1.25□□□□□ -2.21
CCDC88AQ3V6T2 AC124016.2-201ENST00000610058 665 ntBASIC1.25□□□□□ -2.21
CCDC88AQ3V6T2 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC1.25□□□□□ -2.21
CCDC88AQ3V6T2 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC1.25□□□□□ -2.21
CCDC88AQ3V6T2 TLR6-205ENST00000610323 1443 ntTSL 5 BASIC1.25□□□□□ -2.21
CCDC88AQ3V6T2 CDR1-202ENST00000625883 1485 ntBASIC1.25□□□□□ -2.21
CCDC88AQ3V6T2 RNU6-716P-201ENST00000365621 103 ntBASIC1.24□□□□□ -2.21
CCDC88AQ3V6T2 MIR625-201ENST00000385047 85 ntBASIC1.24□□□□□ -2.21
CCDC88AQ3V6T2 LINC01934-201ENST00000414750 391 ntTSL 3 BASIC1.24□□□□□ -2.21
CCDC88AQ3V6T2 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC1.24□□□□□ -2.21
CCDC88AQ3V6T2 AC002381.1-201ENST00000447049 280 ntBASIC1.24□□□□□ -2.21
CCDC88AQ3V6T2 AC112771.1-201ENST00000463581 102 ntBASIC1.24□□□□□ -2.21
CCDC88AQ3V6T2 AC010261.1-201ENST00000514411 457 ntTSL 5 BASIC1.24□□□□□ -2.21
CCDC88AQ3V6T2 AL035078.2-201ENST00000533832 326 ntTSL 3 BASIC1.24□□□□□ -2.21
CCDC88AQ3V6T2 AC008269.2-201ENST00000561915 1105 ntBASIC1.24□□□□□ -2.21
CCDC88AQ3V6T2 ZNF971P-201ENST00000562068 1249 ntBASIC1.24□□□□□ -2.21
CCDC88AQ3V6T2 AC122134.1-202ENST00000569111 1201 ntBASIC1.24□□□□□ -2.21
CCDC88AQ3V6T2 AC002545.1-201ENST00000592511 181 ntBASIC1.24□□□□□ -2.21
CCDC88AQ3V6T2 AL360085.1-201ENST00000604713 532 ntBASIC1.24□□□□□ -2.21
CCDC88AQ3V6T2 AL138963.2-201ENST00000605137 226 ntBASIC1.24□□□□□ -2.21
CCDC88AQ3V6T2 SNORD114-21-201ENST00000606412 72 ntBASIC1.24□□□□□ -2.21
CCDC88AQ3V6T2 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC1.24□□□□□ -2.21
CCDC88AQ3V6T2 Y_RNA.311-201ENST00000365068 96 ntBASIC1.24□□□□□ -2.21
CCDC88AQ3V6T2 MIR29C-201ENST00000385231 88 ntBASIC1.24□□□□□ -2.21
CCDC88AQ3V6T2 MIR936-201ENST00000401264 98 ntBASIC1.24□□□□□ -2.21
CCDC88AQ3V6T2 AL157937.1-201ENST00000435092 443 ntTSL 3 BASIC1.24□□□□□ -2.21
CCDC88AQ3V6T2 USP9YP22-201ENST00000438971 294 ntBASIC1.24□□□□□ -2.21
CCDC88AQ3V6T2 DDX3P2-201ENST00000446138 111 ntBASIC1.24□□□□□ -2.21
CCDC88AQ3V6T2 MAST4-AS1-201ENST00000451496 777 ntTSL 2 BASIC1.24□□□□□ -2.21
CCDC88AQ3V6T2 RNU6-1132P-201ENST00000459214 107 ntBASIC1.24□□□□□ -2.21
CCDC88AQ3V6T2 AL049874.1-201ENST00000489560 388 ntBASIC1.24□□□□□ -2.21
CCDC88AQ3V6T2 AC021146.8-201ENST00000507455 733 ntBASIC1.24□□□□□ -2.21
CCDC88AQ3V6T2 AC096745.1-201ENST00000509945 370 ntBASIC1.24□□□□□ -2.21
CCDC88AQ3V6T2 RN7SKP179-201ENST00000516126 217 ntBASIC1.24□□□□□ -2.21
CCDC88AQ3V6T2 DEFB108E-201ENST00000524692 240 ntBASIC1.24□□□□□ -2.21
CCDC88AQ3V6T2 TRAV32-201ENST00000553993 340 ntBASIC1.24□□□□□ -2.21
CCDC88AQ3V6T2 AC012170.3-201ENST00000560159 297 ntTSL 2 BASIC1.24□□□□□ -2.21
CCDC88AQ3V6T2 AC078880.5-201ENST00000617845 421 ntBASIC1.24□□□□□ -2.21
CCDC88AQ3V6T2 SEPT14P19-202ENST00000632397 370 ntTSL 3 BASIC1.24□□□□□ -2.21
CCDC88AQ3V6T2 RNU6-37P-201ENST00000362692 107 ntBASIC1.23□□□□□ -2.21
CCDC88AQ3V6T2 RNU6-11P-201ENST00000364234 107 ntBASIC1.23□□□□□ -2.21
CCDC88AQ3V6T2 BTF3P8-201ENST00000414577 526 ntBASIC1.23□□□□□ -2.21
CCDC88AQ3V6T2 AL158823.1-201ENST00000418441 478 ntBASIC1.23□□□□□ -2.21
CCDC88AQ3V6T2 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC1.23□□□□□ -2.21
CCDC88AQ3V6T2 AL365273.2-201ENST00000491114 492 ntAPPRIS P1 TSL 5 BASIC1.23□□□□□ -2.21
CCDC88AQ3V6T2 RNU7-193P-201ENST00000516723 65 ntBASIC1.23□□□□□ -2.21
CCDC88AQ3V6T2 MIR3973-201ENST00000579824 107 ntBASIC1.23□□□□□ -2.21
CCDC88AQ3V6T2 AC022960.1-201ENST00000582269 348 ntTSL 3 BASIC1.23□□□□□ -2.21
CCDC88AQ3V6T2 MTCYBP22-201ENST00000603788 447 ntBASIC1.23□□□□□ -2.21
CCDC88AQ3V6T2 AC112191.3-201ENST00000604371 277 ntBASIC1.23□□□□□ -2.21
CCDC88AQ3V6T2 AC003001.2-201ENST00000616294 831 ntBASIC1.23□□□□□ -2.21
CCDC88AQ3V6T2 AC092140.2-201ENST00000618027 521 ntBASIC1.23□□□□□ -2.21
CCDC88AQ3V6T2 AL603758.1-201ENST00000618654 241 ntBASIC1.23□□□□□ -2.21
CCDC88AQ3V6T2 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC1.23□□□□□ -2.21
CCDC88AQ3V6T2 Z75746.1-201ENST00000440243 2080 ntBASIC1.22□□□□□ -2.21
CCDC88AQ3V6T2 MIR330-201ENST00000362196 94 ntBASIC1.22□□□□□ -2.21
CCDC88AQ3V6T2 MIR532-201ENST00000385025 91 ntBASIC1.22□□□□□ -2.21
CCDC88AQ3V6T2 HMGN2P39-201ENST00000398005 273 ntBASIC1.22□□□□□ -2.21
CCDC88AQ3V6T2 CoTC_ribozyme.1-201ENST00000408104 192 ntBASIC1.22□□□□□ -2.21
CCDC88AQ3V6T2 AC096920.1-201ENST00000423991 241 ntBASIC1.22□□□□□ -2.21
CCDC88AQ3V6T2 AC007919.1-201ENST00000429380 217 ntBASIC1.22□□□□□ -2.21
CCDC88AQ3V6T2 RSU1P2-202ENST00000437884 485 ntBASIC1.22□□□□□ -2.21
CCDC88AQ3V6T2 AC005094.1-201ENST00000440420 368 ntBASIC1.22□□□□□ -2.21
CCDC88AQ3V6T2 OARD1-209ENST00000471367 401 ntTSL 2 BASIC1.22□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 97.6 ms