Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 RPS3AP12-201ENST00000443616 753 ntBASIC3.34□□□□□ -1.87
PTCHD3Q3KNS1 RPL37P4-201ENST00000448908 268 ntBASIC3.34□□□□□ -1.87
PTCHD3Q3KNS1 RBMY2UP-201ENST00000453474 324 ntBASIC3.34□□□□□ -1.87
PTCHD3Q3KNS1 AC055764.1-201ENST00000454526 473 ntTSL 3 BASIC3.34□□□□□ -1.87
PTCHD3Q3KNS1 TTTY8B-202ENST00000455570 518 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
PTCHD3Q3KNS1 RNU7-152P-201ENST00000458982 64 ntBASIC3.34□□□□□ -1.87
PTCHD3Q3KNS1 AC116337.1-201ENST00000509680 687 ntBASIC3.34□□□□□ -1.87
PTCHD3Q3KNS1 AC006445.2-201ENST00000510061 472 ntBASIC3.34□□□□□ -1.87
PTCHD3Q3KNS1 RNU6-1183P-201ENST00000517054 60 ntBASIC3.34□□□□□ -1.87
PTCHD3Q3KNS1 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC3.34□□□□□ -1.87
PTCHD3Q3KNS1 AC109479.2-201ENST00000517842 174 ntBASIC3.34□□□□□ -1.87
PTCHD3Q3KNS1 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC3.34□□□□□ -1.87
PTCHD3Q3KNS1 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC3.34□□□□□ -1.87
PTCHD3Q3KNS1 LINC00933-203ENST00000559812 219 ntBASIC3.34□□□□□ -1.87
PTCHD3Q3KNS1 AC091043.1-201ENST00000579830 453 ntTSL 3 BASIC3.34□□□□□ -1.87
PTCHD3Q3KNS1 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC3.34□□□□□ -1.87
PTCHD3Q3KNS1 STARD13-AS-221ENST00000608197 604 ntTSL 5 BASIC3.34□□□□□ -1.87
PTCHD3Q3KNS1 AC002076.2-201ENST00000617362 122 ntBASIC3.34□□□□□ -1.87
PTCHD3Q3KNS1 AL359757.2-201ENST00000624309 274 ntBASIC3.34□□□□□ -1.87
PTCHD3Q3KNS1 U6.99-201ENST00000637524 83 ntBASIC3.34□□□□□ -1.87
PTCHD3Q3KNS1 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC3.34□□□□□ -1.87
PTCHD3Q3KNS1 TUSC7-203ENST00000477539 2415 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
PTCHD3Q3KNS1 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC3.34□□□□□ -1.88
PTCHD3Q3KNS1 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC3.34□□□□□ -1.88
PTCHD3Q3KNS1 ZNF736P3Y-201ENST00000428264 1465 ntBASIC3.34□□□□□ -1.88
PTCHD3Q3KNS1 MACC1-205ENST00000589011 2686 ntAPPRIS P1 TSL 5 BASIC3.34□□□□□ -1.88
PTCHD3Q3KNS1 AC007256.1-201ENST00000392253 2765 ntBASIC3.34□□□□□ -1.88
PTCHD3Q3KNS1 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC3.33□□□□□ -1.88
PTCHD3Q3KNS1 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC3.33□□□□□ -1.88
PTCHD3Q3KNS1 MIR30E-201ENST00000362104 92 ntBASIC3.33□□□□□ -1.88
PTCHD3Q3KNS1 RNU6-270P-201ENST00000364131 105 ntBASIC3.33□□□□□ -1.88
PTCHD3Q3KNS1 RNU6-1227P-201ENST00000383981 107 ntBASIC3.33□□□□□ -1.88
PTCHD3Q3KNS1 Y_RNA.419-201ENST00000384041 102 ntBASIC3.33□□□□□ -1.88
PTCHD3Q3KNS1 SNORD116-29-201ENST00000384516 83 ntBASIC3.33□□□□□ -1.88
PTCHD3Q3KNS1 RNY4P36-201ENST00000391116 96 ntBASIC3.33□□□□□ -1.88
PTCHD3Q3KNS1 AL356057.2-201ENST00000403318 432 ntBASIC3.33□□□□□ -1.88
PTCHD3Q3KNS1 AP000567.1-201ENST00000406413 156 ntBASIC3.33□□□□□ -1.88
PTCHD3Q3KNS1 SNORD56-201ENST00000413522 71 ntBASIC3.33□□□□□ -1.88
PTCHD3Q3KNS1 AC245054.2-201ENST00000415639 319 ntBASIC3.33□□□□□ -1.88
PTCHD3Q3KNS1 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC3.33□□□□□ -1.88
PTCHD3Q3KNS1 AL355340.1-201ENST00000433085 344 ntTSL 3 BASIC3.33□□□□□ -1.88
PTCHD3Q3KNS1 SETP5-201ENST00000437270 562 ntBASIC3.33□□□□□ -1.88
PTCHD3Q3KNS1 HIGD1AP11-201ENST00000438361 280 ntBASIC3.33□□□□□ -1.88
PTCHD3Q3KNS1 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC3.33□□□□□ -1.88
PTCHD3Q3KNS1 LINC01628-201ENST00000444266 397 ntTSL 2 BASIC3.33□□□□□ -1.88
PTCHD3Q3KNS1 RPS4XP2-201ENST00000458402 793 ntBASIC3.33□□□□□ -1.88
PTCHD3Q3KNS1 RPL23AP67-201ENST00000465341 474 ntBASIC3.33□□□□□ -1.88
PTCHD3Q3KNS1 RPL23AP14-201ENST00000468281 468 ntBASIC3.33□□□□□ -1.88
PTCHD3Q3KNS1 RN7SL330P-201ENST00000469709 307 ntBASIC3.33□□□□□ -1.88
PTCHD3Q3KNS1 AL359273.1-202ENST00000505585 905 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
PTCHD3Q3KNS1 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC3.33□□□□□ -1.88
PTCHD3Q3KNS1 RNU6-1016P-201ENST00000516689 94 ntBASIC3.33□□□□□ -1.88
PTCHD3Q3KNS1 RNU1-54P-201ENST00000517181 120 ntBASIC3.33□□□□□ -1.88
PTCHD3Q3KNS1 SNORA70.24-201ENST00000517233 118 ntBASIC3.33□□□□□ -1.88
PTCHD3Q3KNS1 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
PTCHD3Q3KNS1 MS4A4E-206ENST00000528394 555 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
PTCHD3Q3KNS1 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC3.33□□□□□ -1.88
PTCHD3Q3KNS1 APOOP3-201ENST00000536787 586 ntBASIC3.33□□□□□ -1.88
PTCHD3Q3KNS1 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC3.33□□□□□ -1.88
PTCHD3Q3KNS1 NACAP3-201ENST00000552100 481 ntBASIC3.33□□□□□ -1.88
PTCHD3Q3KNS1 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC3.33□□□□□ -1.88
PTCHD3Q3KNS1 CYCSP39-201ENST00000565821 309 ntBASIC3.33□□□□□ -1.88
PTCHD3Q3KNS1 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC3.33□□□□□ -1.88
PTCHD3Q3KNS1 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC3.33□□□□□ -1.88
PTCHD3Q3KNS1 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
PTCHD3Q3KNS1 HSPE1P7-201ENST00000604681 321 ntBASIC3.33□□□□□ -1.88
PTCHD3Q3KNS1 ELOCP5-201ENST00000604924 333 ntBASIC3.33□□□□□ -1.88
PTCHD3Q3KNS1 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC3.33□□□□□ -1.88
PTCHD3Q3KNS1 PRB2-201ENST00000389362 1429 ntAPPRIS P2 TSL 5 BASIC3.33□□□□□ -1.88
PTCHD3Q3KNS1 LINC01592-202ENST00000518540 2367 ntTSL 2 BASIC3.33□□□□□ -1.88
PTCHD3Q3KNS1 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
PTCHD3Q3KNS1 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
PTCHD3Q3KNS1 FASTKD1-205ENST00000453929 2791 ntTSL 2 BASIC3.33□□□□□ -1.88
PTCHD3Q3KNS1 MTND5P7-201ENST00000413558 1798 ntBASIC3.33□□□□□ -1.88
PTCHD3Q3KNS1 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC3.32□□□□□ -1.88
PTCHD3Q3KNS1 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC3.32□□□□□ -1.88
PTCHD3Q3KNS1 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC3.32□□□□□ -1.88
PTCHD3Q3KNS1 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC3.32□□□□□ -1.88
PTCHD3Q3KNS1 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC3.32□□□□□ -1.88
PTCHD3Q3KNS1 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC3.32□□□□□ -1.88
PTCHD3Q3KNS1 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC3.32□□□□□ -1.88
PTCHD3Q3KNS1 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
PTCHD3Q3KNS1 RNU6-1188P-201ENST00000363795 107 ntBASIC3.32□□□□□ -1.88
PTCHD3Q3KNS1 RNU6-884P-201ENST00000363889 107 ntBASIC3.32□□□□□ -1.88
PTCHD3Q3KNS1 RNU1-33P-201ENST00000364249 162 ntBASIC3.32□□□□□ -1.88
PTCHD3Q3KNS1 RNA5SP267-201ENST00000364893 126 ntBASIC3.32□□□□□ -1.88
PTCHD3Q3KNS1 RFX3-203ENST00000381984 364 ntTSL 3 BASIC3.32□□□□□ -1.88
PTCHD3Q3KNS1 AP002088.1-201ENST00000382740 395 ntBASIC3.32□□□□□ -1.88
PTCHD3Q3KNS1 RNU6-601P-201ENST00000384540 107 ntBASIC3.32□□□□□ -1.88
PTCHD3Q3KNS1 MIR491-201ENST00000384877 84 ntBASIC3.32□□□□□ -1.88
PTCHD3Q3KNS1 RNU6-1106P-201ENST00000390845 107 ntBASIC3.32□□□□□ -1.88
PTCHD3Q3KNS1 SNORD17-201ENST00000390930 237 ntBASIC3.32□□□□□ -1.88
PTCHD3Q3KNS1 RPL5P18-201ENST00000406671 891 ntBASIC3.32□□□□□ -1.88
PTCHD3Q3KNS1 MIR1302-11-201ENST00000408051 138 ntBASIC3.32□□□□□ -1.88
PTCHD3Q3KNS1 MIR1302-9-201ENST00000408365 138 ntBASIC3.32□□□□□ -1.88
PTCHD3Q3KNS1 MIR1302-10-201ENST00000408734 138 ntBASIC3.32□□□□□ -1.88
PTCHD3Q3KNS1 RNA5SP31-201ENST00000411144 127 ntBASIC3.32□□□□□ -1.88
PTCHD3Q3KNS1 Z99755.1-201ENST00000414048 380 ntBASIC3.32□□□□□ -1.88
PTCHD3Q3KNS1 PGBD4P6-201ENST00000421501 610 ntBASIC3.32□□□□□ -1.88
PTCHD3Q3KNS1 AL590632.1-201ENST00000424289 371 ntBASIC3.32□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 112.3 ms