Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 U6.48-201ENST00000618523 106 ntBASIC0.23□□□□□ -2.37
COL7A1Q02388 MIR6130-201ENST00000619419 109 ntBASIC0.23□□□□□ -2.37
COL7A1Q02388 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC0.23□□□□□ -2.37
COL7A1Q02388 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC0.23□□□□□ -2.37
COL7A1Q02388 Y_RNA.203-201ENST00000364106 102 ntBASIC0.22□□□□□ -2.37
COL7A1Q02388 Y_RNA.204-201ENST00000364112 102 ntBASIC0.22□□□□□ -2.37
COL7A1Q02388 U6atac.2-201ENST00000408644 118 ntBASIC0.22□□□□□ -2.37
COL7A1Q02388 AC009310.1-201ENST00000414414 451 ntBASIC0.22□□□□□ -2.37
COL7A1Q02388 MICF-203ENST00000432679 129 ntBASIC0.22□□□□□ -2.37
COL7A1Q02388 AC092802.2-202ENST00000444665 371 ntTSL 5 BASIC0.22□□□□□ -2.37
COL7A1Q02388 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC0.22□□□□□ -2.37
COL7A1Q02388 AC104164.3-201ENST00000467363 1258 ntBASIC0.22□□□□□ -2.37
COL7A1Q02388 RNF138P1-201ENST00000502765 546 ntBASIC0.22□□□□□ -2.37
COL7A1Q02388 CYCTP-201ENST00000504253 315 ntBASIC0.22□□□□□ -2.37
COL7A1Q02388 AC108727.1-201ENST00000513802 393 ntTSL 2 BASIC0.22□□□□□ -2.37
COL7A1Q02388 RNA5SP112-201ENST00000515937 99 ntBASIC0.22□□□□□ -2.37
COL7A1Q02388 RERG-IT1-201ENST00000539734 301 ntTSL 3 BASIC0.22□□□□□ -2.37
COL7A1Q02388 AC011773.2-201ENST00000551479 285 ntTSL 5 BASIC0.22□□□□□ -2.37
COL7A1Q02388 LINC02311-201ENST00000556144 383 ntTSL 3 BASIC0.22□□□□□ -2.37
COL7A1Q02388 LINC02562-201ENST00000561705 785 ntTSL 2 BASIC0.22□□□□□ -2.37
COL7A1Q02388 DLGAP1-AS4-201ENST00000582054 757 ntTSL 5 BASIC0.22□□□□□ -2.37
COL7A1Q02388 AC120349.1-201ENST00000599498 282 ntTSL 5 BASIC0.22□□□□□ -2.37
COL7A1Q02388 MTCO2P22-201ENST00000603246 681 ntBASIC0.22□□□□□ -2.37
COL7A1Q02388 Z83818.1-201ENST00000603584 150 ntBASIC0.22□□□□□ -2.37
COL7A1Q02388 AC011374.2-201ENST00000607135 526 ntBASIC0.22□□□□□ -2.37
COL7A1Q02388 AC007349.4-201ENST00000608114 532 ntBASIC0.22□□□□□ -2.37
COL7A1Q02388 AL359854.1-201ENST00000614203 1594 ntBASIC0.22□□□□□ -2.37
COL7A1Q02388 AC090132.2-201ENST00000615881 347 ntBASIC0.22□□□□□ -2.37
COL7A1Q02388 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC0.22□□□□□ -2.37
COL7A1Q02388 AC027309.3-201ENST00000623419 351 ntBASIC0.22□□□□□ -2.37
COL7A1Q02388 AL590396.2-201ENST00000636511 1041 ntBASIC0.22□□□□□ -2.37
COL7A1Q02388 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC0.22□□□□□ -2.37
COL7A1Q02388 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC0.22□□□□□ -2.37
COL7A1Q02388 MGST1-201ENST00000010404 901 ntAPPRIS P1 TSL 5 BASIC0.22□□□□□ -2.37
COL7A1Q02388 DIRC1-201ENST00000308100 1037 ntAPPRIS P1 TSL 1 (best) BASIC0.22□□□□□ -2.37
COL7A1Q02388 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC0.22□□□□□ -2.37
COL7A1Q02388 RNU6-386P-201ENST00000362650 107 ntBASIC0.22□□□□□ -2.37
COL7A1Q02388 RNU5D-1-201ENST00000363299 116 ntBASIC0.22□□□□□ -2.37
COL7A1Q02388 RNU6-833P-201ENST00000363486 107 ntBASIC0.22□□□□□ -2.37
COL7A1Q02388 Y_RNA.146-201ENST00000363549 102 ntBASIC0.22□□□□□ -2.37
COL7A1Q02388 MIR10B-201ENST00000385011 110 ntBASIC0.22□□□□□ -2.37
COL7A1Q02388 MIR325-201ENST00000385260 98 ntBASIC0.22□□□□□ -2.37
COL7A1Q02388 MGST1-203ENST00000396207 909 ntAPPRIS P1 TSL 1 (best) BASIC0.22□□□□□ -2.37
COL7A1Q02388 MIR1302-8-201ENST00000408342 128 ntBASIC0.22□□□□□ -2.37
COL7A1Q02388 AC010385.1-201ENST00000412374 256 ntBASIC0.22□□□□□ -2.37
COL7A1Q02388 OFD1P18Y-201ENST00000420889 959 ntBASIC0.22□□□□□ -2.37
COL7A1Q02388 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC0.22□□□□□ -2.37
COL7A1Q02388 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC0.22□□□□□ -2.37
COL7A1Q02388 VN1R10P-201ENST00000447106 875 ntBASIC0.22□□□□□ -2.37
COL7A1Q02388 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC0.22□□□□□ -2.37
COL7A1Q02388 LINC02469-201ENST00000506460 741 ntTSL 3 BASIC0.22□□□□□ -2.37
COL7A1Q02388 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC0.22□□□□□ -2.37
COL7A1Q02388 RNU6-491P-201ENST00000516099 110 ntBASIC0.22□□□□□ -2.37
COL7A1Q02388 AC136628.3-201ENST00000521868 290 ntBASIC0.22□□□□□ -2.37
COL7A1Q02388 AL353699.1-201ENST00000529078 365 ntTSL 3 BASIC0.22□□□□□ -2.37
COL7A1Q02388 AL158801.3-201ENST00000555514 363 ntTSL 3 BASIC0.22□□□□□ -2.37
COL7A1Q02388 AC019288.1-201ENST00000557918 224 ntBASIC0.22□□□□□ -2.37
COL7A1Q02388 AC115085.1-201ENST00000588924 229 ntBASIC0.22□□□□□ -2.37
COL7A1Q02388 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC0.22□□□□□ -2.37
COL7A1Q02388 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC0.22□□□□□ -2.37
COL7A1Q02388 AC027335.2-201ENST00000624030 375 ntBASIC0.22□□□□□ -2.37
COL7A1Q02388 ZNF93-209ENST00000638737 1020 ntTSL 5 BASIC0.22□□□□□ -2.37
COL7A1Q02388 SNORD3E-201ENST00000362899 217 ntBASIC0.21□□□□□ -2.38
COL7A1Q02388 RNU6-884P-201ENST00000363889 107 ntBASIC0.21□□□□□ -2.38
COL7A1Q02388 DEFB135-201ENST00000382208 234 ntAPPRIS P1 TSL 1 (best) BASIC0.21□□□□□ -2.38
COL7A1Q02388 MIR224-201ENST00000384889 81 ntBASIC0.21□□□□□ -2.38
COL7A1Q02388 BPY2DP-201ENST00000422208 265 ntBASIC0.21□□□□□ -2.38
COL7A1Q02388 RPL36AP53-201ENST00000432891 316 ntBASIC0.21□□□□□ -2.38
COL7A1Q02388 snoU13.21-201ENST00000459368 105 ntBASIC0.21□□□□□ -2.38
COL7A1Q02388 TOPORSLP1-202ENST00000469756 969 ntTSL 3 BASIC0.21□□□□□ -2.38
COL7A1Q02388 GUCA1C-203ENST00000471108 633 ntTSL 2 BASIC0.21□□□□□ -2.38
COL7A1Q02388 AC025465.4-201ENST00000513422 638 ntBASIC0.21□□□□□ -2.38
COL7A1Q02388 LINC01608-201ENST00000523557 544 ntTSL 4 BASIC0.21□□□□□ -2.38
COL7A1Q02388 AC005832.3-201ENST00000537929 631 ntBASIC0.21□□□□□ -2.38
COL7A1Q02388 AC026371.1-201ENST00000551867 419 ntBASIC0.21□□□□□ -2.38
COL7A1Q02388 AL356022.1-202ENST00000555433 379 ntTSL 2 BASIC0.21□□□□□ -2.38
COL7A1Q02388 AC011260.1-201ENST00000578420 472 ntBASIC0.21□□□□□ -2.38
COL7A1Q02388 MIR4645-201ENST00000583158 77 ntBASIC0.21□□□□□ -2.38
COL7A1Q02388 HMGN2P15-201ENST00000585707 270 ntBASIC0.21□□□□□ -2.38
COL7A1Q02388 AC104365.3-201ENST00000587011 625 ntTSL 5 BASIC0.21□□□□□ -2.38
COL7A1Q02388 AC105094.2-203ENST00000590357 555 ntTSL 4 BASIC0.21□□□□□ -2.38
COL7A1Q02388 B3GNTL1P2-201ENST00000603673 288 ntBASIC0.21□□□□□ -2.38
COL7A1Q02388 AC006213.4-201ENST00000616184 634 ntBASIC0.21□□□□□ -2.38
COL7A1Q02388 ZNF663P-202ENST00000641770 1131 ntBASIC0.21□□□□□ -2.38
COL7A1Q02388 ZNF639-206ENST00000484866 1730 ntAPPRIS P1 TSL 2 BASIC0.21□□□□□ -2.38
COL7A1Q02388 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC0.21□□□□□ -2.38
COL7A1Q02388 SNORD114-31-201ENST00000363219 75 ntBASIC0.21□□□□□ -2.38
COL7A1Q02388 RNU6-921P-201ENST00000384361 107 ntBASIC0.21□□□□□ -2.38
COL7A1Q02388 RNU6-45P-201ENST00000384471 107 ntBASIC0.21□□□□□ -2.38
COL7A1Q02388 Y_RNA.548-201ENST00000384656 105 ntBASIC0.21□□□□□ -2.38
COL7A1Q02388 RPS15AP38-201ENST00000413110 372 ntBASIC0.21□□□□□ -2.38
COL7A1Q02388 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC0.21□□□□□ -2.38
COL7A1Q02388 AL365496.1-201ENST00000426885 215 ntBASIC0.21□□□□□ -2.38
COL7A1Q02388 OPA1-AS1-201ENST00000433105 492 ntTSL 3 BASIC0.21□□□□□ -2.38
COL7A1Q02388 RPS15AP5-201ENST00000436276 388 ntBASIC0.21□□□□□ -2.38
COL7A1Q02388 MTCO3P17-201ENST00000443775 513 ntBASIC0.21□□□□□ -2.38
COL7A1Q02388 MTCYBP11-201ENST00000447254 1109 ntBASIC0.21□□□□□ -2.38
COL7A1Q02388 AL590365.1-201ENST00000450788 243 ntBASIC0.21□□□□□ -2.38
COL7A1Q02388 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC0.21□□□□□ -2.38
COL7A1Q02388 AC108752.1-203ENST00000496674 339 ntTSL 5 BASIC0.21□□□□□ -2.38
Retrieved 100 of 98,524 protein–RNA pairs in 129.6 ms