Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 AC012308.1-201ENST00000451232 178 ntBASIC3.38□□□□□ -1.87
NEK3P51956 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC3.38□□□□□ -1.87
NEK3P51956 MED28P2-201ENST00000475771 317 ntBASIC3.38□□□□□ -1.87
NEK3P51956 RPS29P25-201ENST00000481709 171 ntBASIC3.38□□□□□ -1.87
NEK3P51956 AC092185.1-201ENST00000491371 97 ntBASIC3.38□□□□□ -1.87
NEK3P51956 SNORA43.2-201ENST00000516652 128 ntBASIC3.38□□□□□ -1.87
NEK3P51956 COPS8P3-201ENST00000526024 482 ntBASIC3.38□□□□□ -1.87
NEK3P51956 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC3.38□□□□□ -1.87
NEK3P51956 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC3.38□□□□□ -1.87
NEK3P51956 AL118558.2-201ENST00000556294 238 ntBASIC3.38□□□□□ -1.87
NEK3P51956 AC107304.1-201ENST00000604229 296 ntBASIC3.38□□□□□ -1.87
NEK3P51956 AC019159.1-201ENST00000605094 187 ntBASIC3.38□□□□□ -1.87
NEK3P51956 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC3.38□□□□□ -1.87
NEK3P51956 AC002553.4-201ENST00000616896 331 ntBASIC3.38□□□□□ -1.87
NEK3P51956 CYLC1-202ENST00000621735 379 ntAPPRIS ALT2 TSL 3 BASIC3.38□□□□□ -1.87
NEK3P51956 AC104971.4-201ENST00000622763 249 ntTSL 5 BASIC3.38□□□□□ -1.87
NEK3P51956 PCNP-208ENST00000627393 136 ntTSL 2 BASIC3.38□□□□□ -1.87
NEK3P51956 AC024614.3-201ENST00000637860 256 ntBASIC3.38□□□□□ -1.87
NEK3P51956 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC3.38□□□□□ -1.87
NEK3P51956 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
NEK3P51956 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC3.37□□□□□ -1.87
NEK3P51956 KRTAP15-1-201ENST00000334067 671 ntAPPRIS P1 BASIC3.37□□□□□ -1.87
NEK3P51956 SNORA38.1-201ENST00000364172 131 ntBASIC3.37□□□□□ -1.87
NEK3P51956 RNU6-522P-201ENST00000364497 107 ntBASIC3.37□□□□□ -1.87
NEK3P51956 Y_RNA.378-201ENST00000365652 113 ntBASIC3.37□□□□□ -1.87
NEK3P51956 RNU6-843P-201ENST00000384454 104 ntBASIC3.37□□□□□ -1.87
NEK3P51956 AC009480.1-201ENST00000402410 412 ntTSL 3 BASIC3.37□□□□□ -1.87
NEK3P51956 AL513475.1-201ENST00000406602 315 ntBASIC3.37□□□□□ -1.87
NEK3P51956 UBE2Q2P12-201ENST00000414573 204 ntBASIC3.37□□□□□ -1.87
NEK3P51956 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC3.37□□□□□ -1.87
NEK3P51956 ACTR3BP6-201ENST00000422332 1241 ntBASIC3.37□□□□□ -1.87
NEK3P51956 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC3.37□□□□□ -1.87
NEK3P51956 MICF-203ENST00000432679 129 ntBASIC3.37□□□□□ -1.87
NEK3P51956 RNU7-138P-201ENST00000459479 64 ntBASIC3.37□□□□□ -1.87
NEK3P51956 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC3.37□□□□□ -1.87
NEK3P51956 AC006445.1-201ENST00000491925 405 ntBASIC3.37□□□□□ -1.87
NEK3P51956 AC110794.1-201ENST00000505816 425 ntBASIC3.37□□□□□ -1.87
NEK3P51956 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC3.37□□□□□ -1.87
NEK3P51956 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC3.37□□□□□ -1.87
NEK3P51956 RNA5SP380-201ENST00000517190 98 ntBASIC3.37□□□□□ -1.87
NEK3P51956 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC3.37□□□□□ -1.87
NEK3P51956 UBE2Q2P8-201ENST00000560644 102 ntBASIC3.37□□□□□ -1.87
NEK3P51956 AC092120.1-201ENST00000562211 420 ntTSL 3 BASIC3.37□□□□□ -1.87
NEK3P51956 AC010928.1-202ENST00000589354 473 ntTSL 3 BASIC3.37□□□□□ -1.87
NEK3P51956 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC3.37□□□□□ -1.87
NEK3P51956 AC096772.1-201ENST00000609146 564 ntBASIC3.37□□□□□ -1.87
NEK3P51956 AC011890.2-201ENST00000613393 294 ntBASIC3.37□□□□□ -1.87
NEK3P51956 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC3.37□□□□□ -1.87
NEK3P51956 AL160394.1-201ENST00000624765 724 ntBASIC3.37□□□□□ -1.87
NEK3P51956 MIR3651-201ENST00000630427 90 ntBASIC3.37□□□□□ -1.87
NEK3P51956 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC3.37□□□□□ -1.87
NEK3P51956 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC3.37□□□□□ -1.87
NEK3P51956 AC093010.3-201ENST00000570269 15214 ntBASIC3.36□□□□□ -1.87
NEK3P51956 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC3.36□□□□□ -1.87
NEK3P51956 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
NEK3P51956 LINC01419-201ENST00000522365 1521 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
NEK3P51956 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC3.36□□□□□ -1.87
NEK3P51956 AC079150.1-201ENST00000413043 383 ntTSL 3 BASIC3.36□□□□□ -1.87
NEK3P51956 RPL7P37-201ENST00000425095 738 ntBASIC3.36□□□□□ -1.87
NEK3P51956 AL691515.1-201ENST00000432976 733 ntTSL 2 BASIC3.36□□□□□ -1.87
NEK3P51956 ZEB1-AS1-204ENST00000450834 576 ntTSL 3 BASIC3.36□□□□□ -1.87
NEK3P51956 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC3.36□□□□□ -1.87
NEK3P51956 AL024497.2-201ENST00000457081 317 ntTSL 3 BASIC3.36□□□□□ -1.87
NEK3P51956 HMGN2P26-201ENST00000463169 339 ntBASIC3.36□□□□□ -1.87
NEK3P51956 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC3.36□□□□□ -1.87
NEK3P51956 RPL22P13-201ENST00000493291 347 ntBASIC3.36□□□□□ -1.87
NEK3P51956 RNU6-1069P-201ENST00000516612 133 ntBASIC3.36□□□□□ -1.87
NEK3P51956 AC087854.1-201ENST00000519706 414 ntBASIC3.36□□□□□ -1.87
NEK3P51956 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC3.36□□□□□ -1.87
NEK3P51956 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC3.36□□□□□ -1.87
NEK3P51956 AC005476.1-201ENST00000554427 397 ntBASIC3.36□□□□□ -1.87
NEK3P51956 AC007598.2-201ENST00000569490 539 ntTSL 3 BASIC3.36□□□□□ -1.87
NEK3P51956 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC3.36□□□□□ -1.87
NEK3P51956 MIR3616-201ENST00000584070 92 ntBASIC3.36□□□□□ -1.87
NEK3P51956 APOOP1-201ENST00000604695 592 ntBASIC3.36□□□□□ -1.87
NEK3P51956 RMST_3.1-201ENST00000611651 109 ntBASIC3.36□□□□□ -1.87
NEK3P51956 U4.7-201ENST00000638126 106 ntBASIC3.36□□□□□ -1.87
NEK3P51956 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC3.36□□□□□ -1.87
NEK3P51956 AL109809.4-201ENST00000603520 2185 ntBASIC3.36□□□□□ -1.87
NEK3P51956 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
NEK3P51956 TTN-204ENST00000360870 18218 ntTSL 5 BASIC3.36□□□□□ -1.87
NEK3P51956 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC3.36□□□□□ -1.87
NEK3P51956 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC3.35□□□□□ -1.87
NEK3P51956 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
NEK3P51956 AC108750.1-201ENST00000637986 2706 ntAPPRIS P1 TSL 4 BASIC3.35□□□□□ -1.87
NEK3P51956 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC3.35□□□□□ -1.87
NEK3P51956 AL359854.1-201ENST00000614203 1594 ntBASIC3.35□□□□□ -1.87
NEK3P51956 RNU6-858P-201ENST00000362436 107 ntBASIC3.35□□□□□ -1.87
NEK3P51956 RNU6-78P-201ENST00000362897 107 ntBASIC3.35□□□□□ -1.87
NEK3P51956 MIR483-201ENST00000385070 76 ntBASIC3.35□□□□□ -1.87
NEK3P51956 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC3.35□□□□□ -1.87
NEK3P51956 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC3.35□□□□□ -1.87
NEK3P51956 SAR1AP4-201ENST00000429225 591 ntBASIC3.35□□□□□ -1.87
NEK3P51956 AL603839.2-201ENST00000437060 546 ntTSL 5 BASIC3.35□□□□□ -1.87
NEK3P51956 HMGB1P31-201ENST00000437242 427 ntBASIC3.35□□□□□ -1.87
NEK3P51956 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC3.35□□□□□ -1.87
NEK3P51956 AC092989.1-201ENST00000481235 277 ntBASIC3.35□□□□□ -1.87
NEK3P51956 TRBVA-201ENST00000498804 316 ntBASIC3.35□□□□□ -1.87
NEK3P51956 SNORA19.2-201ENST00000516013 114 ntBASIC3.35□□□□□ -1.87
NEK3P51956 SCARNA17.1-201ENST00000516211 143 ntBASIC3.35□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 87.8 ms