Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 ZNF883-201ENST00000619044 2051 ntAPPRIS P1 TSL 5 BASIC4.61□□□□□ -1.67
LIG1P18858 MIR181A1HG-203ENST00000436880 2308 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
LIG1P18858 MTND5P9-201ENST00000503854 1755 ntBASIC4.6□□□□□ -1.67
LIG1P18858 N4BP2L2-202ENST00000357505 2917 ntTSL 2 BASIC4.6□□□□□ -1.67
LIG1P18858 CCNH-206ENST00000508855 2391 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
LIG1P18858 Y_RNA.105-201ENST00000363182 111 ntBASIC4.6□□□□□ -1.67
LIG1P18858 RNU6-1167P-201ENST00000363227 94 ntBASIC4.6□□□□□ -1.67
LIG1P18858 SNORD35B-201ENST00000363660 87 ntBASIC4.6□□□□□ -1.67
LIG1P18858 RNA5SP130-201ENST00000364431 114 ntBASIC4.6□□□□□ -1.67
LIG1P18858 RN7SKP227-201ENST00000364445 330 ntBASIC4.6□□□□□ -1.67
LIG1P18858 RNU6-384P-201ENST00000364900 104 ntBASIC4.6□□□□□ -1.67
LIG1P18858 RNU6-629P-201ENST00000384061 103 ntBASIC4.6□□□□□ -1.67
LIG1P18858 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC4.6□□□□□ -1.67
LIG1P18858 MIR548M-201ENST00000408260 86 ntBASIC4.6□□□□□ -1.67
LIG1P18858 SNORD56-201ENST00000413522 71 ntBASIC4.6□□□□□ -1.67
LIG1P18858 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
LIG1P18858 AC092017.2-201ENST00000427600 362 ntBASIC4.6□□□□□ -1.67
LIG1P18858 AL159987.2-201ENST00000432754 307 ntBASIC4.6□□□□□ -1.67
LIG1P18858 AL353680.1-201ENST00000433788 337 ntTSL 3 BASIC4.6□□□□□ -1.67
LIG1P18858 NDUFB1P2-201ENST00000449477 176 ntBASIC4.6□□□□□ -1.67
LIG1P18858 U8.21-201ENST00000459536 136 ntBASIC4.6□□□□□ -1.67
LIG1P18858 RPL30P10-201ENST00000488148 337 ntBASIC4.6□□□□□ -1.67
LIG1P18858 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC4.6□□□□□ -1.67
LIG1P18858 AC099522.1-202ENST00000514718 367 ntBASIC4.6□□□□□ -1.67
LIG1P18858 AC084851.1-201ENST00000529105 249 ntBASIC4.6□□□□□ -1.67
LIG1P18858 SNORD84-203ENST00000584275 78 ntBASIC4.6□□□□□ -1.67
LIG1P18858 AC015911.9-201ENST00000591634 185 ntTSL 5 BASIC4.6□□□□□ -1.67
LIG1P18858 AC009314.1-201ENST00000603871 304 ntBASIC4.6□□□□□ -1.67
LIG1P18858 AC009779.6-201ENST00000603972 165 ntBASIC4.6□□□□□ -1.67
LIG1P18858 AC243829.7-201ENST00000633081 225 ntBASIC4.6□□□□□ -1.67
LIG1P18858 AP000560.1-201ENST00000624150 1937 ntBASIC4.6□□□□□ -1.67
LIG1P18858 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC4.6□□□□□ -1.67
LIG1P18858 FOXP2-207ENST00000393494 2664 ntAPPRIS P2 TSL 5 BASIC4.59□□□□□ -1.67
LIG1P18858 CCDC102B-201ENST00000360242 2711 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
LIG1P18858 LRRN3-203ENST00000422987 3513 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
LIG1P18858 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
LIG1P18858 SPRR2C-201ENST00000290702 219 ntBASIC4.59□□□□□ -1.67
LIG1P18858 MIR412-201ENST00000362142 91 ntBASIC4.59□□□□□ -1.67
LIG1P18858 MIR335-201ENST00000362173 94 ntBASIC4.59□□□□□ -1.67
LIG1P18858 MIR423-201ENST00000362201 94 ntBASIC4.59□□□□□ -1.67
LIG1P18858 RNU6-37P-201ENST00000362692 107 ntBASIC4.59□□□□□ -1.67
LIG1P18858 RNU5A-1-201ENST00000362698 116 ntBASIC4.59□□□□□ -1.67
LIG1P18858 RNU6-11P-201ENST00000364234 107 ntBASIC4.59□□□□□ -1.67
LIG1P18858 RNU6-7-201ENST00000364784 107 ntBASIC4.59□□□□□ -1.67
LIG1P18858 RNA5SP235-201ENST00000365411 114 ntBASIC4.59□□□□□ -1.67
LIG1P18858 RNU6-8-201ENST00000365467 107 ntBASIC4.59□□□□□ -1.67
LIG1P18858 RNU6-25P-201ENST00000383873 107 ntBASIC4.59□□□□□ -1.67
LIG1P18858 RNU6-1-201ENST00000383898 107 ntBASIC4.59□□□□□ -1.67
LIG1P18858 RNU6-48P-201ENST00000384161 107 ntBASIC4.59□□□□□ -1.67
LIG1P18858 RNU6-36P-201ENST00000384172 107 ntBASIC4.59□□□□□ -1.67
LIG1P18858 RNU6-4P-201ENST00000384205 107 ntBASIC4.59□□□□□ -1.67
LIG1P18858 RNU6-5P-201ENST00000384238 107 ntBASIC4.59□□□□□ -1.67
LIG1P18858 RNU6-3P-201ENST00000384314 107 ntBASIC4.59□□□□□ -1.67
LIG1P18858 RNU6-16P-201ENST00000384385 107 ntBASIC4.59□□□□□ -1.67
LIG1P18858 RNU6-15P-201ENST00000384534 107 ntBASIC4.59□□□□□ -1.67
LIG1P18858 RNU6-2-201ENST00000384627 107 ntBASIC4.59□□□□□ -1.67
LIG1P18858 RNU6-29P-201ENST00000384637 107 ntBASIC4.59□□□□□ -1.67
LIG1P18858 RNU6-9-201ENST00000384776 107 ntBASIC4.59□□□□□ -1.67
LIG1P18858 MIR521-1-201ENST00000384902 87 ntBASIC4.59□□□□□ -1.67
LIG1P18858 RNA5SP317-201ENST00000410176 116 ntBASIC4.59□□□□□ -1.67
LIG1P18858 RNU6-1203P-201ENST00000410703 110 ntBASIC4.59□□□□□ -1.67
LIG1P18858 RNU2-25P-201ENST00000411041 191 ntBASIC4.59□□□□□ -1.67
LIG1P18858 RNU6-130P-201ENST00000411112 103 ntBASIC4.59□□□□□ -1.67
LIG1P18858 RNA5SP311-201ENST00000411290 116 ntBASIC4.59□□□□□ -1.67
LIG1P18858 AL592148.1-201ENST00000413568 445 ntBASIC4.59□□□□□ -1.67
LIG1P18858 RPL21P38-201ENST00000418090 167 ntBASIC4.59□□□□□ -1.67
LIG1P18858 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC4.59□□□□□ -1.67
LIG1P18858 OR4C10P-201ENST00000434991 931 ntBASIC4.59□□□□□ -1.67
LIG1P18858 HCG2040054-201ENST00000435331 434 ntTSL 3 BASIC4.59□□□□□ -1.67
LIG1P18858 AC010285.1-201ENST00000470580 392 ntBASIC4.59□□□□□ -1.67
LIG1P18858 RPL7P47-201ENST00000497299 556 ntBASIC4.59□□□□□ -1.67
LIG1P18858 BTF3L4P4-201ENST00000506381 449 ntBASIC4.59□□□□□ -1.67
LIG1P18858 AC026726.1-201ENST00000512859 601 ntBASIC4.59□□□□□ -1.67
LIG1P18858 RNA5SP315-201ENST00000516340 116 ntBASIC4.59□□□□□ -1.67
LIG1P18858 RNA5SP143-201ENST00000516936 115 ntBASIC4.59□□□□□ -1.67
LIG1P18858 RNA5SP312-201ENST00000517068 116 ntBASIC4.59□□□□□ -1.67
LIG1P18858 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC4.59□□□□□ -1.67
LIG1P18858 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC4.59□□□□□ -1.67
LIG1P18858 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC4.59□□□□□ -1.67
LIG1P18858 AC007224.1-201ENST00000564410 144 ntBASIC4.59□□□□□ -1.67
LIG1P18858 AMZ2P1-203ENST00000565833 850 ntBASIC4.59□□□□□ -1.67
LIG1P18858 MIR5684-201ENST00000585074 65 ntBASIC4.59□□□□□ -1.67
LIG1P18858 AL161798.1-201ENST00000604630 131 ntBASIC4.59□□□□□ -1.67
LIG1P18858 RNU6-6P-201ENST00000606623 107 ntBASIC4.59□□□□□ -1.67
LIG1P18858 MIR486-1-201ENST00000612171 68 ntBASIC4.59□□□□□ -1.67
LIG1P18858 AC004852.3-201ENST00000614131 326 ntBASIC4.59□□□□□ -1.67
LIG1P18858 MIR8058-201ENST00000615737 89 ntBASIC4.59□□□□□ -1.67
LIG1P18858 AP001282.2-201ENST00000616149 309 ntBASIC4.59□□□□□ -1.67
LIG1P18858 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC4.59□□□□□ -1.68
LIG1P18858 HSP90AA4P-202ENST00000506915 2228 ntBASIC4.58□□□□□ -1.68
LIG1P18858 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
LIG1P18858 ELAVL2-204ENST00000397312 3805 ntAPPRIS P3 TSL 1 (best) BASIC4.58□□□□□ -1.68
LIG1P18858 DLG1-217ENST00000452595 3053 ntTSL 2 BASIC4.58□□□□□ -1.68
LIG1P18858 TNP2-201ENST00000312693 626 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
LIG1P18858 Y_RNA.27-201ENST00000362540 103 ntBASIC4.58□□□□□ -1.68
LIG1P18858 RNA5SP295-201ENST00000362655 121 ntBASIC4.58□□□□□ -1.68
LIG1P18858 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC4.58□□□□□ -1.68
LIG1P18858 MTHFD2P2-201ENST00000407725 247 ntBASIC4.58□□□□□ -1.68
LIG1P18858 RNA5SP129-201ENST00000410276 118 ntBASIC4.58□□□□□ -1.68
LIG1P18858 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC4.58□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 97 ms