Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 ZNF280D-204ENST00000558320 3666 ntTSL 1 (best) BASIC2.54□□□□□ -2
VIMP08670 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC2.54□□□□□ -2
VIMP08670 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC2.54□□□□□ -2
VIMP08670 PAPOLA-202ENST00000392990 2588 ntTSL 5 BASIC2.54□□□□□ -2
VIMP08670 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC2.53□□□□□ -2
VIMP08670 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC2.53□□□□□ -2
VIMP08670 EDDM3A-201ENST00000326842 927 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
VIMP08670 RNU6-942P-201ENST00000363002 107 ntBASIC2.53□□□□□ -2
VIMP08670 RNU6-486P-201ENST00000363116 107 ntBASIC2.53□□□□□ -2
VIMP08670 RNU1-51P-201ENST00000365345 176 ntBASIC2.53□□□□□ -2
VIMP08670 SNORA9-201ENST00000384215 133 ntBASIC2.53□□□□□ -2
VIMP08670 MIR524-201ENST00000385242 87 ntBASIC2.53□□□□□ -2
VIMP08670 DEFB108C-201ENST00000400154 252 ntBASIC2.53□□□□□ -2
VIMP08670 ATP13A5-AS1-201ENST00000414634 476 ntTSL 3 BASIC2.53□□□□□ -2
VIMP08670 MTND1P23-201ENST00000416931 372 ntBASIC2.53□□□□□ -2
VIMP08670 AC083900.1-201ENST00000421964 469 ntTSL 2 BASIC2.53□□□□□ -2
VIMP08670 NUP35P1-201ENST00000422734 947 ntBASIC2.53□□□□□ -2
VIMP08670 AL138775.1-201ENST00000429539 575 ntTSL 1 (best) BASIC2.53□□□□□ -2
VIMP08670 AL596276.1-201ENST00000434465 418 ntBASIC2.53□□□□□ -2
VIMP08670 IFNA11P-201ENST00000446352 526 ntBASIC2.53□□□□□ -2
VIMP08670 AL513328.1-201ENST00000446460 224 ntBASIC2.53□□□□□ -2
VIMP08670 AL139109.1-201ENST00000455491 297 ntBASIC2.53□□□□□ -2
VIMP08670 CDKN3-205ENST00000458126 845 ntAPPRIS ALT2 TSL 5 BASIC2.53□□□□□ -2
VIMP08670 AC112771.1-201ENST00000463581 102 ntBASIC2.53□□□□□ -2
VIMP08670 AC096576.1-201ENST00000489014 359 ntBASIC2.53□□□□□ -2
VIMP08670 MTND3P25-201ENST00000509243 135 ntBASIC2.53□□□□□ -2
VIMP08670 AC114781.4-201ENST00000513707 639 ntBASIC2.53□□□□□ -2
VIMP08670 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC2.53□□□□□ -2
VIMP08670 RNA5SP282-201ENST00000516355 108 ntBASIC2.53□□□□□ -2
VIMP08670 AC109329.2-201ENST00000519658 482 ntBASIC2.53□□□□□ -2
VIMP08670 MIR3611-201ENST00000584484 83 ntBASIC2.53□□□□□ -2
VIMP08670 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC2.53□□□□□ -2
VIMP08670 AC093732.2-201ENST00000607950 274 ntBASIC2.53□□□□□ -2
VIMP08670 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC2.53□□□□□ -2
VIMP08670 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC2.53□□□□□ -2
VIMP08670 LINC01090-203ENST00000632331 466 ntTSL 5 BASIC2.53□□□□□ -2
VIMP08670 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC2.53□□□□□ -2
VIMP08670 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC2.53□□□□□ -2.01
VIMP08670 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC2.53□□□□□ -2.01
VIMP08670 Z75746.1-201ENST00000440243 2080 ntBASIC2.53□□□□□ -2.01
VIMP08670 ZNF658B-202ENST00000615961 3375 ntBASIC2.52□□□□□ -2.01
VIMP08670 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
VIMP08670 AC005336.3-201ENST00000623833 2679 ntBASIC2.52□□□□□ -2.01
VIMP08670 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
VIMP08670 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
VIMP08670 RNU4ATAC16P-201ENST00000408512 126 ntBASIC2.52□□□□□ -2.01
VIMP08670 RN7SKP27-201ENST00000410684 333 ntBASIC2.52□□□□□ -2.01
VIMP08670 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC2.52□□□□□ -2.01
VIMP08670 AL353621.1-201ENST00000418219 243 ntBASIC2.52□□□□□ -2.01
VIMP08670 AL162254.1-202ENST00000419604 497 ntTSL 5 BASIC2.52□□□□□ -2.01
VIMP08670 AC006333.1-201ENST00000422401 410 ntTSL 3 BASIC2.52□□□□□ -2.01
VIMP08670 AL445524.1-202ENST00000440665 416 ntTSL 3 BASIC2.52□□□□□ -2.01
VIMP08670 CALM1P1-201ENST00000442082 433 ntBASIC2.52□□□□□ -2.01
VIMP08670 AL157882.1-201ENST00000447148 429 ntTSL 3 BASIC2.52□□□□□ -2.01
VIMP08670 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC2.52□□□□□ -2.01
VIMP08670 TPT1P7-201ENST00000458300 517 ntBASIC2.52□□□□□ -2.01
VIMP08670 MED28P2-201ENST00000475771 317 ntBASIC2.52□□□□□ -2.01
VIMP08670 MTAPP1-201ENST00000489154 819 ntBASIC2.52□□□□□ -2.01
VIMP08670 HMGB1P30-201ENST00000492455 606 ntBASIC2.52□□□□□ -2.01
VIMP08670 RPL22P13-201ENST00000493291 347 ntBASIC2.52□□□□□ -2.01
VIMP08670 SMURF2P1-201ENST00000514992 481 ntBASIC2.52□□□□□ -2.01
VIMP08670 Y_RNA.687-201ENST00000516558 91 ntBASIC2.52□□□□□ -2.01
VIMP08670 RNU5B-3P-201ENST00000516601 115 ntBASIC2.52□□□□□ -2.01
VIMP08670 AP004607.1-201ENST00000524456 203 ntBASIC2.52□□□□□ -2.01
VIMP08670 AC022080.3-201ENST00000544433 482 ntBASIC2.52□□□□□ -2.01
VIMP08670 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC2.52□□□□□ -2.01
VIMP08670 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC2.52□□□□□ -2.01
VIMP08670 AC009127.3-201ENST00000570531 403 ntBASIC2.52□□□□□ -2.01
VIMP08670 MIR4703-201ENST00000577728 79 ntBASIC2.52□□□□□ -2.01
VIMP08670 MIR4429-201ENST00000580105 73 ntBASIC2.52□□□□□ -2.01
VIMP08670 AC105245.1-201ENST00000581934 244 ntBASIC2.52□□□□□ -2.01
VIMP08670 MIR4325-201ENST00000583049 90 ntBASIC2.52□□□□□ -2.01
VIMP08670 AC008945.2-201ENST00000606056 604 ntBASIC2.52□□□□□ -2.01
VIMP08670 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
VIMP08670 AC069294.1-201ENST00000608397 350 ntBASIC2.52□□□□□ -2.01
VIMP08670 AL596220.1-201ENST00000622121 542 ntTSL 4 BASIC2.52□□□□□ -2.01
VIMP08670 MIR203B-201ENST00000636080 86 ntBASIC2.52□□□□□ -2.01
VIMP08670 Clostridiales-1.3-201ENST00000637703 147 ntBASIC2.52□□□□□ -2.01
VIMP08670 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
VIMP08670 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC2.51□□□□□ -2.01
VIMP08670 LRRC69-201ENST00000343709 720 ntTSL 2 BASIC2.51□□□□□ -2.01
VIMP08670 Y_RNA.159-201ENST00000363674 87 ntBASIC2.51□□□□□ -2.01
VIMP08670 RNU6-45P-201ENST00000384471 107 ntBASIC2.51□□□□□ -2.01
VIMP08670 RNU6-606P-201ENST00000384721 111 ntBASIC2.51□□□□□ -2.01
VIMP08670 EEF1A1P41-201ENST00000414667 207 ntBASIC2.51□□□□□ -2.01
VIMP08670 MTATP6P18-201ENST00000417994 673 ntBASIC2.51□□□□□ -2.01
VIMP08670 AC097463.2-201ENST00000421074 142 ntBASIC2.51□□□□□ -2.01
VIMP08670 MTCO3P30-201ENST00000426425 670 ntBASIC2.51□□□□□ -2.01
VIMP08670 AC064852.1-201ENST00000427571 851 ntTSL 3 BASIC2.51□□□□□ -2.01
VIMP08670 AL138830.2-202ENST00000446358 786 ntTSL 2 BASIC2.51□□□□□ -2.01
VIMP08670 Z83846.1-201ENST00000446798 265 ntBASIC2.51□□□□□ -2.01
VIMP08670 EEF1B2P7-201ENST00000451177 676 ntBASIC2.51□□□□□ -2.01
VIMP08670 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC2.51□□□□□ -2.01
VIMP08670 Z84488.1-201ENST00000476099 530 ntTSL 2 BASIC2.51□□□□□ -2.01
VIMP08670 RPL7P43-201ENST00000478876 753 ntBASIC2.51□□□□□ -2.01
VIMP08670 AC092436.1-201ENST00000506450 503 ntBASIC2.51□□□□□ -2.01
VIMP08670 RNA5SP341-201ENST00000516261 117 ntBASIC2.51□□□□□ -2.01
VIMP08670 MIR892C-201ENST00000516410 77 ntBASIC2.51□□□□□ -2.01
VIMP08670 RNU6-1178P-201ENST00000516674 107 ntBASIC2.51□□□□□ -2.01
VIMP08670 AC008114.1-201ENST00000544122 427 ntTSL 2 BASIC2.51□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 104.2 ms