Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC2□□□□□ -2.09
CLDN9O95484 AC002984.1-201ENST00000591692 448 ntBASIC2□□□□□ -2.09
CLDN9O95484 ZNF788-206ENST00000596883 692 ntTSL 3 BASIC2□□□□□ -2.09
CLDN9O95484 AC009314.1-201ENST00000603871 304 ntBASIC2□□□□□ -2.09
CLDN9O95484 AC126118.1-201ENST00000607744 628 ntBASIC2□□□□□ -2.09
CLDN9O95484 AC010378.1-201ENST00000619270 362 ntBASIC2□□□□□ -2.09
CLDN9O95484 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC1.99□□□□□ -2.09
CLDN9O95484 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC1.99□□□□□ -2.09
CLDN9O95484 AC073343.1-201ENST00000328239 651 ntBASIC1.99□□□□□ -2.09
CLDN9O95484 Y_RNA.164-201ENST00000363709 102 ntBASIC1.99□□□□□ -2.09
CLDN9O95484 RNA5SP160-201ENST00000364866 120 ntBASIC1.99□□□□□ -2.09
CLDN9O95484 RNA5SP240-201ENST00000365355 128 ntBASIC1.99□□□□□ -2.09
CLDN9O95484 MRPL42P2-201ENST00000403169 426 ntBASIC1.99□□□□□ -2.09
CLDN9O95484 Y_RNA.608-201ENST00000410647 95 ntBASIC1.99□□□□□ -2.09
CLDN9O95484 AL135786.1-201ENST00000415892 214 ntBASIC1.99□□□□□ -2.09
CLDN9O95484 HMGN2P38-201ENST00000423806 265 ntBASIC1.99□□□□□ -2.09
CLDN9O95484 SLC44A3-AS1-205ENST00000424505 612 ntBASIC1.99□□□□□ -2.09
CLDN9O95484 LINC01673-201ENST00000426418 468 ntTSL 3 BASIC1.99□□□□□ -2.09
CLDN9O95484 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC1.99□□□□□ -2.09
CLDN9O95484 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC1.99□□□□□ -2.09
CLDN9O95484 AC010976.1-211ENST00000454503 644 ntTSL 2 BASIC1.99□□□□□ -2.09
CLDN9O95484 CYP2C59P-201ENST00000457790 269 ntBASIC1.99□□□□□ -2.09
CLDN9O95484 AP000797.1-201ENST00000478870 387 ntBASIC1.99□□□□□ -2.09
CLDN9O95484 RPS29P21-201ENST00000496272 170 ntBASIC1.99□□□□□ -2.09
CLDN9O95484 AC108727.1-201ENST00000513802 393 ntTSL 2 BASIC1.99□□□□□ -2.09
CLDN9O95484 RNU5B-3P-201ENST00000516601 115 ntBASIC1.99□□□□□ -2.09
CLDN9O95484 AC118273.2-201ENST00000532092 465 ntBASIC1.99□□□□□ -2.09
CLDN9O95484 AC136188.1-201ENST00000546770 342 ntTSL 3 BASIC1.99□□□□□ -2.09
CLDN9O95484 AC123905.1-201ENST00000552098 541 ntTSL 4 BASIC1.99□□□□□ -2.09
CLDN9O95484 AC092325.1-201ENST00000566449 554 ntBASIC1.99□□□□□ -2.09
CLDN9O95484 AL031775.1-201ENST00000607014 887 ntBASIC1.99□□□□□ -2.09
CLDN9O95484 RNU6-87P-201ENST00000607561 108 ntBASIC1.99□□□□□ -2.09
CLDN9O95484 RNU6-91P-201ENST00000607774 107 ntBASIC1.99□□□□□ -2.09
CLDN9O95484 AL359547.2-201ENST00000615810 418 ntBASIC1.99□□□□□ -2.09
CLDN9O95484 AC027807.2-201ENST00000616099 408 ntBASIC1.99□□□□□ -2.09
CLDN9O95484 AC017037.3-201ENST00000625016 472 ntBASIC1.99□□□□□ -2.09
CLDN9O95484 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC1.99□□□□□ -2.09
CLDN9O95484 Clostridiales-1.3-201ENST00000637703 147 ntBASIC1.99□□□□□ -2.09
CLDN9O95484 CEP57L1-203ENST00000368970 1680 ntAPPRIS ALT2 TSL 5 BASIC1.99□□□□□ -2.09
CLDN9O95484 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC1.98□□□□□ -2.09
CLDN9O95484 Y_RNA.4-201ENST00000362333 112 ntBASIC1.98□□□□□ -2.09
CLDN9O95484 SNORD3E-201ENST00000362899 217 ntBASIC1.98□□□□□ -2.09
CLDN9O95484 RNU4-1-201ENST00000363925 141 ntBASIC1.98□□□□□ -2.09
CLDN9O95484 Y_RNA.226-201ENST00000364337 114 ntBASIC1.98□□□□□ -2.09
CLDN9O95484 SNORA16B-201ENST00000364674 135 ntBASIC1.98□□□□□ -2.09
CLDN9O95484 Y_RNA.269-201ENST00000364685 89 ntBASIC1.98□□□□□ -2.09
CLDN9O95484 Y_RNA.338-201ENST00000365320 114 ntBASIC1.98□□□□□ -2.09
CLDN9O95484 C6orf62-201ENST00000378102 741 ntTSL 5 BASIC1.98□□□□□ -2.09
CLDN9O95484 RNU6-39P-201ENST00000384344 107 ntBASIC1.98□□□□□ -2.09
CLDN9O95484 RNU6ATAC37P-201ENST00000408328 131 ntBASIC1.98□□□□□ -2.09
CLDN9O95484 AL592435.1-201ENST00000416401 469 ntTSL 3 BASIC1.98□□□□□ -2.09
CLDN9O95484 AC137499.1-201ENST00000427602 88 ntBASIC1.98□□□□□ -2.09
CLDN9O95484 LINC00392-201ENST00000430033 557 ntTSL 3 BASIC1.98□□□□□ -2.09
CLDN9O95484 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC1.98□□□□□ -2.09
CLDN9O95484 USP9YP8-201ENST00000441913 500 ntBASIC1.98□□□□□ -2.09
CLDN9O95484 AC009238.1-201ENST00000442165 424 ntBASIC1.98□□□□□ -2.09
CLDN9O95484 MTND5P2-201ENST00000442927 1142 ntBASIC1.98□□□□□ -2.09
CLDN9O95484 AC009237.6-201ENST00000446969 424 ntBASIC1.98□□□□□ -2.09
CLDN9O95484 AL353705.4-201ENST00000449661 238 ntBASIC1.98□□□□□ -2.09
CLDN9O95484 AC055764.1-201ENST00000454526 473 ntTSL 3 BASIC1.98□□□□□ -2.09
CLDN9O95484 AL160287.1-201ENST00000455612 432 ntTSL 3 BASIC1.98□□□□□ -2.09
CLDN9O95484 LINC00709-201ENST00000458168 494 ntTSL 2 BASIC1.98□□□□□ -2.09
CLDN9O95484 MED28P2-201ENST00000475771 317 ntBASIC1.98□□□□□ -2.09
CLDN9O95484 AC091917.1-201ENST00000506330 566 ntTSL 4 BASIC1.98□□□□□ -2.09
CLDN9O95484 AC093206.1-201ENST00000515364 497 ntTSL 3 BASIC1.98□□□□□ -2.09
CLDN9O95484 RN7SKP265-201ENST00000516448 223 ntBASIC1.98□□□□□ -2.09
CLDN9O95484 DEUP1-203ENST00000527307 767 ntTSL 3 BASIC1.98□□□□□ -2.09
CLDN9O95484 MYL12A-202ENST00000536605 899 ntAPPRIS P1 TSL 1 (best) BASIC1.98□□□□□ -2.09
CLDN9O95484 CCDC7-208ENST00000537047 657 ntAPPRIS ALT2 TSL 1 (best) BASIC1.98□□□□□ -2.09
CLDN9O95484 MRPL51-203ENST00000538814 501 ntTSL 2 BASIC1.98□□□□□ -2.09
CLDN9O95484 CCDC7-209ENST00000539197 581 ntAPPRIS ALT2 TSL 1 (best) BASIC1.98□□□□□ -2.09
CLDN9O95484 AC135279.1-201ENST00000543493 504 ntBASIC1.98□□□□□ -2.09
CLDN9O95484 MIR3126-201ENST00000577443 74 ntBASIC1.98□□□□□ -2.09
CLDN9O95484 MYL12A-209ENST00000580887 899 ntTSL 1 (best) BASIC1.98□□□□□ -2.09
CLDN9O95484 AC087045.1-201ENST00000605856 382 ntBASIC1.98□□□□□ -2.09
CLDN9O95484 AC092140.2-201ENST00000618027 521 ntBASIC1.98□□□□□ -2.09
CLDN9O95484 CYLC1-202ENST00000621735 379 ntAPPRIS ALT2 TSL 3 BASIC1.98□□□□□ -2.09
CLDN9O95484 AC092656.1-203ENST00000624134 423 ntBASIC1.98□□□□□ -2.09
CLDN9O95484 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC1.98□□□□□ -2.09
CLDN9O95484 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC1.98□□□□□ -2.09
CLDN9O95484 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC1.97□□□□□ -2.09
CLDN9O95484 MTND4P1-201ENST00000457501 1466 ntBASIC1.97□□□□□ -2.09
CLDN9O95484 AC131280.1-202ENST00000624067 4211 ntBASIC1.97□□□□□ -2.09
CLDN9O95484 Y_RNA.118-201ENST00000363300 101 ntBASIC1.97□□□□□ -2.09
CLDN9O95484 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC1.97□□□□□ -2.09
CLDN9O95484 Y_RNA.466-201ENST00000384294 113 ntBASIC1.97□□□□□ -2.09
CLDN9O95484 SNORA67.3-201ENST00000384366 140 ntBASIC1.97□□□□□ -2.09
CLDN9O95484 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC1.97□□□□□ -2.09
CLDN9O95484 AL355497.1-201ENST00000406262 551 ntBASIC1.97□□□□□ -2.09
CLDN9O95484 RNA5SP425-201ENST00000410336 112 ntBASIC1.97□□□□□ -2.09
CLDN9O95484 RN7SKP223-201ENST00000410582 62 ntBASIC1.97□□□□□ -2.09
CLDN9O95484 Y_RNA.623-201ENST00000411128 95 ntBASIC1.97□□□□□ -2.09
CLDN9O95484 AC064871.1-202ENST00000413954 382 ntTSL 5 BASIC1.97□□□□□ -2.09
CLDN9O95484 HIGD1AP15-201ENST00000416198 280 ntBASIC1.97□□□□□ -2.09
CLDN9O95484 AC138623.1-201ENST00000418060 216 ntBASIC1.97□□□□□ -2.09
CLDN9O95484 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC1.97□□□□□ -2.09
CLDN9O95484 ELOCP4-201ENST00000420090 333 ntBASIC1.97□□□□□ -2.09
CLDN9O95484 AL365338.1-201ENST00000422282 858 ntBASIC1.97□□□□□ -2.09
CLDN9O95484 AL160275.3-201ENST00000423876 471 ntBASIC1.97□□□□□ -2.09
CLDN9O95484 AC027124.2-201ENST00000428249 105 ntBASIC1.97□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 120.7 ms