Protein–RNA interactions for Protein: Q9UKF6

CPSF3, Cleavage and polyadenylation specificity factor subunit 3, humanhuman

Known RBP Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3Q9UKF6 AC104073.3-201ENST00000610942 955 ntBASIC2.77□□□□□ -1.97
CPSF3Q9UKF6 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC2.77□□□□□ -1.97
CPSF3Q9UKF6 HSPA8P4-201ENST00000511877 1920 ntBASIC2.77□□□□□ -1.97
CPSF3Q9UKF6 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
CPSF3Q9UKF6 AK9-203ENST00000368948 2478 ntTSL 5 BASIC2.77□□□□□ -1.97
CPSF3Q9UKF6 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC2.77□□□□□ -1.97
CPSF3Q9UKF6 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC2.76□□□□□ -1.97
CPSF3Q9UKF6 Z82195.2-201ENST00000612348 18351 ntBASIC2.76□□□□□ -1.97
CPSF3Q9UKF6 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC2.76□□□□□ -1.97
CPSF3Q9UKF6 LRRC69-201ENST00000343709 720 ntTSL 2 BASIC2.76□□□□□ -1.97
CPSF3Q9UKF6 Y_RNA.296-201ENST00000364930 108 ntBASIC2.76□□□□□ -1.97
CPSF3Q9UKF6 RNU4-48P-201ENST00000365559 182 ntBASIC2.76□□□□□ -1.97
CPSF3Q9UKF6 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
CPSF3Q9UKF6 SNORA40C-201ENST00000391285 128 ntBASIC2.76□□□□□ -1.97
CPSF3Q9UKF6 AC068050.1-201ENST00000394891 380 ntBASIC2.76□□□□□ -1.97
CPSF3Q9UKF6 MTATP6P18-201ENST00000417994 673 ntBASIC2.76□□□□□ -1.97
CPSF3Q9UKF6 MTCYBP5-201ENST00000423752 1135 ntBASIC2.76□□□□□ -1.97
CPSF3Q9UKF6 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC2.76□□□□□ -1.97
CPSF3Q9UKF6 CALM2P2-201ENST00000428512 440 ntBASIC2.76□□□□□ -1.97
CPSF3Q9UKF6 AC073464.1-201ENST00000429823 534 ntBASIC2.76□□□□□ -1.97
CPSF3Q9UKF6 AC233279.1-201ENST00000455300 423 ntBASIC2.76□□□□□ -1.97
CPSF3Q9UKF6 LINC00430-201ENST00000457672 597 ntTSL 3 BASIC2.76□□□□□ -1.97
CPSF3Q9UKF6 AC022364.2-201ENST00000457963 554 ntBASIC2.76□□□□□ -1.97
CPSF3Q9UKF6 AC046136.1-201ENST00000459855 533 ntTSL 3 BASIC2.76□□□□□ -1.97
CPSF3Q9UKF6 RPS27AP9-201ENST00000477681 438 ntBASIC2.76□□□□□ -1.97
CPSF3Q9UKF6 HMGB1P29-201ENST00000505659 499 ntBASIC2.76□□□□□ -1.97
CPSF3Q9UKF6 AC100768.1-201ENST00000525512 506 ntTSL 3 BASIC2.76□□□□□ -1.97
CPSF3Q9UKF6 FAM92A1P1-201ENST00000528023 890 ntBASIC2.76□□□□□ -1.97
CPSF3Q9UKF6 OR4R1P-201ENST00000529879 463 ntBASIC2.76□□□□□ -1.97
CPSF3Q9UKF6 RANP3-201ENST00000530970 276 ntBASIC2.76□□□□□ -1.97
CPSF3Q9UKF6 AC234778.2-201ENST00000566241 354 ntBASIC2.76□□□□□ -1.97
CPSF3Q9UKF6 WARS-244ENST00000627608 123 ntTSL 5 BASIC2.76□□□□□ -1.97
CPSF3Q9UKF6 AC243829.7-201ENST00000633081 225 ntBASIC2.76□□□□□ -1.97
CPSF3Q9UKF6 U6.99-201ENST00000637524 83 ntBASIC2.76□□□□□ -1.97
CPSF3Q9UKF6 MIR7515-201ENST00000637837 67 ntBASIC2.76□□□□□ -1.97
CPSF3Q9UKF6 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC2.76□□□□□ -1.97
CPSF3Q9UKF6 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC2.76□□□□□ -1.97
CPSF3Q9UKF6 SNORD3E-201ENST00000362899 217 ntBASIC2.75□□□□□ -1.97
CPSF3Q9UKF6 RNU6-395P-201ENST00000365662 106 ntBASIC2.75□□□□□ -1.97
CPSF3Q9UKF6 RNU6-259P-201ENST00000383999 107 ntBASIC2.75□□□□□ -1.97
CPSF3Q9UKF6 RNU6-1042P-201ENST00000384204 107 ntBASIC2.75□□□□□ -1.97
CPSF3Q9UKF6 RNU6-166P-201ENST00000384371 107 ntBASIC2.75□□□□□ -1.97
CPSF3Q9UKF6 MIR518C-201ENST00000384822 101 ntBASIC2.75□□□□□ -1.97
CPSF3Q9UKF6 MIR578-201ENST00000384828 96 ntBASIC2.75□□□□□ -1.97
CPSF3Q9UKF6 CD3D-202ENST00000392884 476 ntTSL 2 BASIC2.75□□□□□ -1.97
CPSF3Q9UKF6 AL096701.2-201ENST00000416920 238 ntBASIC2.75□□□□□ -1.97
CPSF3Q9UKF6 AFDN-AS1-202ENST00000417244 182 ntTSL 2 BASIC2.75□□□□□ -1.97
CPSF3Q9UKF6 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC2.75□□□□□ -1.97
CPSF3Q9UKF6 DNAJC19P4-201ENST00000440115 345 ntBASIC2.75□□□□□ -1.97
CPSF3Q9UKF6 HMGN2P10-201ENST00000448085 265 ntBASIC2.75□□□□□ -1.97
CPSF3Q9UKF6 LINC01069-201ENST00000452933 546 ntTSL 5 BASIC2.75□□□□□ -1.97
CPSF3Q9UKF6 RNU7-182P-201ENST00000459009 62 ntBASIC2.75□□□□□ -1.97
CPSF3Q9UKF6 AC008571.1-201ENST00000467232 300 ntBASIC2.75□□□□□ -1.97
CPSF3Q9UKF6 EIF4EP3-201ENST00000498782 656 ntBASIC2.75□□□□□ -1.97
CPSF3Q9UKF6 LAMTOR3P2-201ENST00000504479 232 ntBASIC2.75□□□□□ -1.97
CPSF3Q9UKF6 AC112206.3-201ENST00000514578 389 ntBASIC2.75□□□□□ -1.97
CPSF3Q9UKF6 RN7SKP24-201ENST00000515888 284 ntBASIC2.75□□□□□ -1.97
CPSF3Q9UKF6 AC109329.2-201ENST00000519658 482 ntBASIC2.75□□□□□ -1.97
CPSF3Q9UKF6 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC2.75□□□□□ -1.97
CPSF3Q9UKF6 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC2.75□□□□□ -1.97
CPSF3Q9UKF6 AC021739.1-201ENST00000559631 174 ntBASIC2.75□□□□□ -1.97
CPSF3Q9UKF6 AC044798.1-201ENST00000565146 418 ntTSL 5 BASIC2.75□□□□□ -1.97
CPSF3Q9UKF6 AP005671.1-201ENST00000581798 463 ntTSL 3 BASIC2.75□□□□□ -1.97
CPSF3Q9UKF6 MIR3117-201ENST00000584034 78 ntBASIC2.75□□□□□ -1.97
CPSF3Q9UKF6 AL670379.4-201ENST00000605279 254 ntBASIC2.75□□□□□ -1.97
CPSF3Q9UKF6 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC2.75□□□□□ -1.97
CPSF3Q9UKF6 ZNF680P1-201ENST00000436625 1469 ntBASIC2.75□□□□□ -1.97
CPSF3Q9UKF6 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC2.74□□□□□ -1.97
CPSF3Q9UKF6 KCNIP4-207ENST00000509207 1301 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
CPSF3Q9UKF6 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC2.74□□□□□ -1.97
CPSF3Q9UKF6 MDM4-202ENST00000367180 547 ntTSL 3 BASIC2.74□□□□□ -1.97
CPSF3Q9UKF6 RNU6-1029P-201ENST00000384109 107 ntBASIC2.74□□□□□ -1.97
CPSF3Q9UKF6 Y_RNA.500-201ENST00000384466 111 ntBASIC2.74□□□□□ -1.97
CPSF3Q9UKF6 RNU6-606P-201ENST00000384721 111 ntBASIC2.74□□□□□ -1.97
CPSF3Q9UKF6 MIR592-201ENST00000384959 97 ntBASIC2.74□□□□□ -1.97
CPSF3Q9UKF6 RNU6-550P-201ENST00000391057 101 ntBASIC2.74□□□□□ -1.97
CPSF3Q9UKF6 RNA5SP111-201ENST00000411386 101 ntBASIC2.74□□□□□ -1.97
CPSF3Q9UKF6 AL353193.1-201ENST00000421444 268 ntBASIC2.74□□□□□ -1.97
CPSF3Q9UKF6 AC007560.1-201ENST00000426912 237 ntBASIC2.74□□□□□ -1.97
CPSF3Q9UKF6 AC000111.3-201ENST00000433478 193 ntBASIC2.74□□□□□ -1.97
CPSF3Q9UKF6 AC002486.1-201ENST00000435098 391 ntBASIC2.74□□□□□ -1.97
CPSF3Q9UKF6 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC2.74□□□□□ -1.97
CPSF3Q9UKF6 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC2.74□□□□□ -1.97
CPSF3Q9UKF6 AC104058.1-201ENST00000448028 297 ntBASIC2.74□□□□□ -1.97
CPSF3Q9UKF6 AC128713.1-201ENST00000471495 306 ntBASIC2.74□□□□□ -1.97
CPSF3Q9UKF6 UMAD1-204ENST00000482067 569 ntTSL 5 BASIC2.74□□□□□ -1.97
CPSF3Q9UKF6 AC008716.1-201ENST00000511084 513 ntBASIC2.74□□□□□ -1.97
CPSF3Q9UKF6 AC114781.4-201ENST00000513707 639 ntBASIC2.74□□□□□ -1.97
CPSF3Q9UKF6 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC2.74□□□□□ -1.97
CPSF3Q9UKF6 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC2.74□□□□□ -1.97
CPSF3Q9UKF6 ASPH-224ENST00000522603 842 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
CPSF3Q9UKF6 OR5BN1P-201ENST00000532955 829 ntBASIC2.74□□□□□ -1.97
CPSF3Q9UKF6 AC006199.1-201ENST00000548728 219 ntBASIC2.74□□□□□ -1.97
CPSF3Q9UKF6 AL356280.1-201ENST00000603614 379 ntBASIC2.74□□□□□ -1.97
CPSF3Q9UKF6 C8orf59-207ENST00000611854 563 ntAPPRIS P1 TSL 2 BASIC2.74□□□□□ -1.97
CPSF3Q9UKF6 AL449363.1-201ENST00000617815 186 ntBASIC2.74□□□□□ -1.97
CPSF3Q9UKF6 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC2.74□□□□□ -1.97
CPSF3Q9UKF6 SEPT14P19-203ENST00000633205 211 ntBASIC2.74□□□□□ -1.97
CPSF3Q9UKF6 U6.114-201ENST00000636407 96 ntBASIC2.74□□□□□ -1.97
CPSF3Q9UKF6 NANOGNB-202ENST00000640040 824 ntAPPRIS ALT2 TSL 5 BASIC2.74□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 218.1 ms