Protein–RNA interactions for Protein: Q9NPD3

EXOSC4, Exosome complex component RRP41, humanhuman

Known RBP Predictions only

Length 245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC4Q9NPD3 AC022202.1-201ENST00000613515 211 ntBASIC1.73□□□□□ -2.13
EXOSC4Q9NPD3 U4atac.1-201ENST00000618345 95 ntBASIC1.73□□□□□ -2.13
EXOSC4Q9NPD3 KLRF1-202ENST00000354855 838 ntTSL 1 (best) BASIC1.72□□□□□ -2.13
EXOSC4Q9NPD3 SNORD56.2-201ENST00000363242 71 ntBASIC1.72□□□□□ -2.13
EXOSC4Q9NPD3 RNU4-1-201ENST00000363925 141 ntBASIC1.72□□□□□ -2.13
EXOSC4Q9NPD3 RNU6-1280P-201ENST00000365211 107 ntBASIC1.72□□□□□ -2.13
EXOSC4Q9NPD3 RNU6-39P-201ENST00000384344 107 ntBASIC1.72□□□□□ -2.13
EXOSC4Q9NPD3 RNU6-748P-201ENST00000384648 107 ntBASIC1.72□□□□□ -2.13
EXOSC4Q9NPD3 RNU6-1025P-201ENST00000410629 104 ntBASIC1.72□□□□□ -2.13
EXOSC4Q9NPD3 Y_RNA.608-201ENST00000410647 95 ntBASIC1.72□□□□□ -2.13
EXOSC4Q9NPD3 RNA5SP508-201ENST00000411327 119 ntBASIC1.72□□□□□ -2.13
EXOSC4Q9NPD3 MAGI2-AS2-201ENST00000411616 476 ntTSL 2 BASIC1.72□□□□□ -2.13
EXOSC4Q9NPD3 EDDM3CP-201ENST00000415977 425 ntBASIC1.72□□□□□ -2.13
EXOSC4Q9NPD3 AC073641.1-201ENST00000425192 429 ntTSL 3 BASIC1.72□□□□□ -2.13
EXOSC4Q9NPD3 PTGES3P4-201ENST00000426243 356 ntBASIC1.72□□□□□ -2.13
EXOSC4Q9NPD3 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC1.72□□□□□ -2.13
EXOSC4Q9NPD3 AL356583.2-201ENST00000426536 280 ntBASIC1.72□□□□□ -2.13
EXOSC4Q9NPD3 AL589872.1-201ENST00000426602 288 ntBASIC1.72□□□□□ -2.13
EXOSC4Q9NPD3 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC1.72□□□□□ -2.13
EXOSC4Q9NPD3 FABP5P13-201ENST00000452144 328 ntBASIC1.72□□□□□ -2.13
EXOSC4Q9NPD3 PCDH9-AS4-201ENST00000456459 436 ntTSL 3 BASIC1.72□□□□□ -2.13
EXOSC4Q9NPD3 RPS3AP22-201ENST00000488297 769 ntBASIC1.72□□□□□ -2.13
EXOSC4Q9NPD3 MTCYBP35-201ENST00000503630 1137 ntBASIC1.72□□□□□ -2.13
EXOSC4Q9NPD3 AC109927.2-201ENST00000506416 303 ntBASIC1.72□□□□□ -2.13
EXOSC4Q9NPD3 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC1.72□□□□□ -2.13
EXOSC4Q9NPD3 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC1.72□□□□□ -2.13
EXOSC4Q9NPD3 MRPS33P3-201ENST00000513456 322 ntBASIC1.72□□□□□ -2.13
EXOSC4Q9NPD3 RN7SKP287-201ENST00000516546 266 ntBASIC1.72□□□□□ -2.13
EXOSC4Q9NPD3 RNU6-759P-201ENST00000516740 103 ntBASIC1.72□□□□□ -2.13
EXOSC4Q9NPD3 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC1.72□□□□□ -2.13
EXOSC4Q9NPD3 DEUP1-203ENST00000527307 767 ntTSL 3 BASIC1.72□□□□□ -2.13
EXOSC4Q9NPD3 MIR1273D-201ENST00000577266 86 ntBASIC1.72□□□□□ -2.13
EXOSC4Q9NPD3 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC1.72□□□□□ -2.13
EXOSC4Q9NPD3 MIR5089-201ENST00000580047 84 ntBASIC1.72□□□□□ -2.13
EXOSC4Q9NPD3 MIR548AB-201ENST00000584917 84 ntBASIC1.72□□□□□ -2.13
EXOSC4Q9NPD3 HMGN1P30-201ENST00000589286 268 ntBASIC1.72□□□□□ -2.13
EXOSC4Q9NPD3 AC007229.1-201ENST00000590455 412 ntBASIC1.72□□□□□ -2.13
EXOSC4Q9NPD3 AC012493.3-201ENST00000604494 112 ntBASIC1.72□□□□□ -2.13
EXOSC4Q9NPD3 AL031775.1-201ENST00000607014 887 ntBASIC1.72□□□□□ -2.13
EXOSC4Q9NPD3 MALAT1-206ENST00000612781 234 ntTSL 3 BASIC1.72□□□□□ -2.13
EXOSC4Q9NPD3 C8orf59-209ENST00000612977 586 ntAPPRIS P1 TSL 2 BASIC1.72□□□□□ -2.13
EXOSC4Q9NPD3 AC131159.1-201ENST00000621854 213 ntBASIC1.72□□□□□ -2.13
EXOSC4Q9NPD3 FRG1KP-201ENST00000623592 341 ntBASIC1.72□□□□□ -2.13
EXOSC4Q9NPD3 AC012593.1-211ENST00000625996 799 ntTSL 5 BASIC1.72□□□□□ -2.13
EXOSC4Q9NPD3 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC1.72□□□□□ -2.13
EXOSC4Q9NPD3 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC1.72□□□□□ -2.13
EXOSC4Q9NPD3 RNU6-960P-201ENST00000364056 120 ntBASIC1.71□□□□□ -2.14
EXOSC4Q9NPD3 RNU5E-5P-201ENST00000365379 116 ntBASIC1.71□□□□□ -2.14
EXOSC4Q9NPD3 XGY1-201ENST00000381172 446 ntBASIC1.71□□□□□ -2.14
EXOSC4Q9NPD3 SNORA75B-201ENST00000384053 137 ntBASIC1.71□□□□□ -2.14
EXOSC4Q9NPD3 RNA5SP425-201ENST00000410336 112 ntBASIC1.71□□□□□ -2.14
EXOSC4Q9NPD3 RNU2-20P-201ENST00000410425 191 ntBASIC1.71□□□□□ -2.14
EXOSC4Q9NPD3 USP9YP6-201ENST00000413550 854 ntBASIC1.71□□□□□ -2.14
EXOSC4Q9NPD3 TEX41-202ENST00000414256 604 ntTSL 5 BASIC1.71□□□□□ -2.14
EXOSC4Q9NPD3 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC1.71□□□□□ -2.14
EXOSC4Q9NPD3 AC006366.1-201ENST00000422002 759 ntBASIC1.71□□□□□ -2.14
EXOSC4Q9NPD3 RPL23AP30-201ENST00000432419 501 ntBASIC1.71□□□□□ -2.14
EXOSC4Q9NPD3 AL136234.1-201ENST00000437080 349 ntTSL 2 BASIC1.71□□□□□ -2.14
EXOSC4Q9NPD3 DMD-AS3-201ENST00000439592 293 ntTSL 3 BASIC1.71□□□□□ -2.14
EXOSC4Q9NPD3 AL121957.1-201ENST00000441532 338 ntTSL 2 BASIC1.71□□□□□ -2.14
EXOSC4Q9NPD3 AL353705.4-201ENST00000449661 238 ntBASIC1.71□□□□□ -2.14
EXOSC4Q9NPD3 ZNF736P5Y-201ENST00000451173 805 ntBASIC1.71□□□□□ -2.14
EXOSC4Q9NPD3 KATNBL1P6-201ENST00000453433 915 ntBASIC1.71□□□□□ -2.14
EXOSC4Q9NPD3 OARD1-209ENST00000471367 401 ntTSL 2 BASIC1.71□□□□□ -2.14
EXOSC4Q9NPD3 AP000797.1-201ENST00000478870 387 ntBASIC1.71□□□□□ -2.14
EXOSC4Q9NPD3 AC007182.2-201ENST00000489251 402 ntBASIC1.71□□□□□ -2.14
EXOSC4Q9NPD3 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC1.71□□□□□ -2.14
EXOSC4Q9NPD3 RNA5SP112-201ENST00000515937 99 ntBASIC1.71□□□□□ -2.14
EXOSC4Q9NPD3 RNU6-677P-201ENST00000516914 101 ntBASIC1.71□□□□□ -2.14
EXOSC4Q9NPD3 ACA59.2-201ENST00000517061 156 ntBASIC1.71□□□□□ -2.14
EXOSC4Q9NPD3 IGKV3-31-201ENST00000523109 329 ntBASIC1.71□□□□□ -2.14
EXOSC4Q9NPD3 AC136188.1-201ENST00000546770 342 ntTSL 3 BASIC1.71□□□□□ -2.14
EXOSC4Q9NPD3 LINC00933-203ENST00000559812 219 ntBASIC1.71□□□□□ -2.14
EXOSC4Q9NPD3 AC233702.2-202ENST00000562547 291 ntBASIC1.71□□□□□ -2.14
EXOSC4Q9NPD3 AC024614.2-201ENST00000577584 372 ntBASIC1.71□□□□□ -2.14
EXOSC4Q9NPD3 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC1.71□□□□□ -2.14
EXOSC4Q9NPD3 AC090897.2-201ENST00000581715 130 ntBASIC1.71□□□□□ -2.14
EXOSC4Q9NPD3 WISP1-OT1-201ENST00000602893 642 ntBASIC1.71□□□□□ -2.14
EXOSC4Q9NPD3 SNRPGP19-201ENST00000603826 189 ntBASIC1.71□□□□□ -2.14
EXOSC4Q9NPD3 AL158032.1-201ENST00000605401 106 ntBASIC1.71□□□□□ -2.14
EXOSC4Q9NPD3 RNU6-87P-201ENST00000607561 108 ntBASIC1.71□□□□□ -2.14
EXOSC4Q9NPD3 AC126118.1-201ENST00000607744 628 ntBASIC1.71□□□□□ -2.14
EXOSC4Q9NPD3 AC034229.4-201ENST00000607861 441 ntBASIC1.71□□□□□ -2.14
EXOSC4Q9NPD3 AC004223.4-201ENST00000612426 332 ntBASIC1.71□□□□□ -2.14
EXOSC4Q9NPD3 MIR7844-201ENST00000616161 122 ntBASIC1.71□□□□□ -2.14
EXOSC4Q9NPD3 MIR6134-201ENST00000617606 109 ntBASIC1.71□□□□□ -2.14
EXOSC4Q9NPD3 MIR6852-201ENST00000621699 66 ntBASIC1.71□□□□□ -2.14
EXOSC4Q9NPD3 TBC1D15-210ENST00000485960 2489 ntAPPRIS P1 TSL 1 (best) BASIC1.71□□□□□ -2.14
EXOSC4Q9NPD3 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC1.7□□□□□ -2.14
EXOSC4Q9NPD3 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC1.7□□□□□ -2.14
EXOSC4Q9NPD3 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC1.7□□□□□ -2.14
EXOSC4Q9NPD3 MIR449A-201ENST00000362113 91 ntBASIC1.7□□□□□ -2.14
EXOSC4Q9NPD3 MIR301A-201ENST00000385261 86 ntBASIC1.7□□□□□ -2.14
EXOSC4Q9NPD3 RN7SKP32-201ENST00000410167 303 ntBASIC1.7□□□□□ -2.14
EXOSC4Q9NPD3 AC096920.1-201ENST00000423991 241 ntBASIC1.7□□□□□ -2.14
EXOSC4Q9NPD3 AC119618.1-201ENST00000434191 222 ntBASIC1.7□□□□□ -2.14
EXOSC4Q9NPD3 RPS15AP9-201ENST00000439856 381 ntBASIC1.7□□□□□ -2.14
EXOSC4Q9NPD3 UBE2D3P4-201ENST00000441973 436 ntBASIC1.7□□□□□ -2.14
EXOSC4Q9NPD3 AC096638.1-201ENST00000444678 216 ntBASIC1.7□□□□□ -2.14
EXOSC4Q9NPD3 MTND1P12-201ENST00000455231 147 ntBASIC1.7□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 118.3 ms