Protein–RNA interactions for Protein: Q9H1J1

UPF3A, Regulator of nonsense transcripts 3A, humanhuman

Known RBP Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AQ9H1J1 MIR4775-201ENST00000581168 75 ntBASIC2.73□□□□□ -1.97
UPF3AQ9H1J1 BNIP3P30-201ENST00000601184 574 ntBASIC2.73□□□□□ -1.97
UPF3AQ9H1J1 RPL23AP88-201ENST00000605759 454 ntBASIC2.73□□□□□ -1.97
UPF3AQ9H1J1 AL445584.2-201ENST00000614030 616 ntTSL 5 BASIC2.73□□□□□ -1.97
UPF3AQ9H1J1 SDR42E1P2-201ENST00000614861 481 ntBASIC2.73□□□□□ -1.97
UPF3AQ9H1J1 EFCAB5-213ENST00000638539 168 ntTSL 5 BASIC2.73□□□□□ -1.97
UPF3AQ9H1J1 AC093536.2-201ENST00000565257 1406 ntBASIC2.73□□□□□ -1.97
UPF3AQ9H1J1 TRIQK-204ENST00000517858 1882 ntTSL 3 BASIC2.73□□□□□ -1.97
UPF3AQ9H1J1 MAPK10-266ENST00000641066 6555 ntBASIC2.73□□□□□ -1.97
UPF3AQ9H1J1 AC114316.2-202ENST00000502934 2957 ntTSL 2 BASIC2.73□□□□□ -1.97
UPF3AQ9H1J1 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
UPF3AQ9H1J1 Y_RNA.89-201ENST00000363031 102 ntBASIC2.72□□□□□ -1.97
UPF3AQ9H1J1 RNA5SP139-201ENST00000364340 117 ntBASIC2.72□□□□□ -1.97
UPF3AQ9H1J1 RNU6-61P-201ENST00000365528 109 ntBASIC2.72□□□□□ -1.97
UPF3AQ9H1J1 MDM4-202ENST00000367180 547 ntTSL 3 BASIC2.72□□□□□ -1.97
UPF3AQ9H1J1 AL354864.1-201ENST00000373226 539 ntTSL 2 BASIC2.72□□□□□ -1.97
UPF3AQ9H1J1 RNU6-606P-201ENST00000384721 111 ntBASIC2.72□□□□□ -1.97
UPF3AQ9H1J1 FO393413.1-201ENST00000402892 195 ntBASIC2.72□□□□□ -1.97
UPF3AQ9H1J1 RNU2-39P-201ENST00000410604 198 ntBASIC2.72□□□□□ -1.97
UPF3AQ9H1J1 GTF2IP20-201ENST00000431663 360 ntBASIC2.72□□□□□ -1.97
UPF3AQ9H1J1 USP12PX-201ENST00000432383 1057 ntBASIC2.72□□□□□ -1.97
UPF3AQ9H1J1 RPS12P2-201ENST00000439728 269 ntBASIC2.72□□□□□ -1.97
UPF3AQ9H1J1 AC104389.3-201ENST00000445629 235 ntBASIC2.72□□□□□ -1.97
UPF3AQ9H1J1 MRPL50P4-201ENST00000446432 475 ntBASIC2.72□□□□□ -1.97
UPF3AQ9H1J1 AC092162.2-204ENST00000451851 566 ntTSL 4 BASIC2.72□□□□□ -1.97
UPF3AQ9H1J1 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC2.72□□□□□ -1.97
UPF3AQ9H1J1 AL031183.1-201ENST00000457667 207 ntBASIC2.72□□□□□ -1.97
UPF3AQ9H1J1 snoU13.23-201ENST00000458863 104 ntBASIC2.72□□□□□ -1.97
UPF3AQ9H1J1 RNA5SP310-201ENST00000459084 116 ntBASIC2.72□□□□□ -1.97
UPF3AQ9H1J1 SNORD97-201ENST00000459187 142 ntBASIC2.72□□□□□ -1.97
UPF3AQ9H1J1 RPL30P14-201ENST00000482744 348 ntBASIC2.72□□□□□ -1.97
UPF3AQ9H1J1 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC2.72□□□□□ -1.97
UPF3AQ9H1J1 MTAPP1-201ENST00000489154 819 ntBASIC2.72□□□□□ -1.97
UPF3AQ9H1J1 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC2.72□□□□□ -1.97
UPF3AQ9H1J1 AC092436.1-201ENST00000506450 503 ntBASIC2.72□□□□□ -1.97
UPF3AQ9H1J1 AC098799.2-201ENST00000509466 868 ntBASIC2.72□□□□□ -1.97
UPF3AQ9H1J1 LINC02061-201ENST00000514225 335 ntTSL 3 BASIC2.72□□□□□ -1.97
UPF3AQ9H1J1 SNORA31.3-201ENST00000516029 96 ntBASIC2.72□□□□□ -1.97
UPF3AQ9H1J1 SNORA70.16-201ENST00000516390 95 ntBASIC2.72□□□□□ -1.97
UPF3AQ9H1J1 AP005435.4-201ENST00000529514 284 ntBASIC2.72□□□□□ -1.97
UPF3AQ9H1J1 AC109635.3-201ENST00000529536 185 ntBASIC2.72□□□□□ -1.97
UPF3AQ9H1J1 AC093012.1-202ENST00000549403 582 ntBASIC2.72□□□□□ -1.97
UPF3AQ9H1J1 RPS3AP4-201ENST00000555161 764 ntBASIC2.72□□□□□ -1.97
UPF3AQ9H1J1 AC104458.1-201ENST00000608243 463 ntBASIC2.72□□□□□ -1.97
UPF3AQ9H1J1 AC046143.2-201ENST00000609789 160 ntBASIC2.72□□□□□ -1.97
UPF3AQ9H1J1 AC008162.2-201ENST00000613352 291 ntAPPRIS P1 TSL 3 BASIC2.72□□□□□ -1.97
UPF3AQ9H1J1 WT1-AS_8.1-201ENST00000615200 275 ntBASIC2.72□□□□□ -1.97
UPF3AQ9H1J1 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC2.72□□□□□ -1.97
UPF3AQ9H1J1 AC090132.2-201ENST00000615881 347 ntBASIC2.72□□□□□ -1.97
UPF3AQ9H1J1 MIR1291-201ENST00000627649 87 ntBASIC2.72□□□□□ -1.97
UPF3AQ9H1J1 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC2.72□□□□□ -1.97
UPF3AQ9H1J1 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
UPF3AQ9H1J1 ZNF883-201ENST00000619044 2051 ntAPPRIS P1 TSL 5 BASIC2.72□□□□□ -1.97
UPF3AQ9H1J1 AC092881.1-201ENST00000638218 2733 ntBASIC2.71□□□□□ -1.98
UPF3AQ9H1J1 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
UPF3AQ9H1J1 SNORA62.1-201ENST00000364287 154 ntBASIC2.71□□□□□ -1.98
UPF3AQ9H1J1 RNU6-1322P-201ENST00000364309 107 ntBASIC2.71□□□□□ -1.98
UPF3AQ9H1J1 Y_RNA.303-201ENST00000364998 94 ntBASIC2.71□□□□□ -1.98
UPF3AQ9H1J1 RNU4-48P-201ENST00000365559 182 ntBASIC2.71□□□□□ -1.98
UPF3AQ9H1J1 RNU6-946P-201ENST00000383878 107 ntBASIC2.71□□□□□ -1.98
UPF3AQ9H1J1 SNORA69-201ENST00000383895 132 ntBASIC2.71□□□□□ -1.98
UPF3AQ9H1J1 RNU6-641P-201ENST00000384006 107 ntBASIC2.71□□□□□ -1.98
UPF3AQ9H1J1 Y_RNA.453-201ENST00000384223 109 ntBASIC2.71□□□□□ -1.98
UPF3AQ9H1J1 MIR514A1-201ENST00000385133 98 ntBASIC2.71□□□□□ -1.98
UPF3AQ9H1J1 MIR454-201ENST00000390180 115 ntBASIC2.71□□□□□ -1.98
UPF3AQ9H1J1 FAT1P1-201ENST00000406588 507 ntBASIC2.71□□□□□ -1.98
UPF3AQ9H1J1 RNU4-26P-201ENST00000410270 107 ntBASIC2.71□□□□□ -1.98
UPF3AQ9H1J1 RN7SKP140-201ENST00000411196 284 ntBASIC2.71□□□□□ -1.98
UPF3AQ9H1J1 RNA5SP492-201ENST00000411330 114 ntBASIC2.71□□□□□ -1.98
UPF3AQ9H1J1 BX682237.1-201ENST00000415016 335 ntBASIC2.71□□□□□ -1.98
UPF3AQ9H1J1 OR51A5P-201ENST00000415429 942 ntBASIC2.71□□□□□ -1.98
UPF3AQ9H1J1 AL513477.1-202ENST00000417061 214 ntBASIC2.71□□□□□ -1.98
UPF3AQ9H1J1 USP9YP27-201ENST00000418455 438 ntBASIC2.71□□□□□ -1.98
UPF3AQ9H1J1 AL451054.2-201ENST00000420896 202 ntBASIC2.71□□□□□ -1.98
UPF3AQ9H1J1 RAC1P6-201ENST00000423911 575 ntBASIC2.71□□□□□ -1.98
UPF3AQ9H1J1 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC2.71□□□□□ -1.98
UPF3AQ9H1J1 AC008850.1-201ENST00000427546 362 ntBASIC2.71□□□□□ -1.98
UPF3AQ9H1J1 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC2.71□□□□□ -1.98
UPF3AQ9H1J1 BNIP3P2-201ENST00000441221 577 ntBASIC2.71□□□□□ -1.98
UPF3AQ9H1J1 AL121871.1-201ENST00000443413 436 ntBASIC2.71□□□□□ -1.98
UPF3AQ9H1J1 AC073415.1-201ENST00000449240 153 ntBASIC2.71□□□□□ -1.98
UPF3AQ9H1J1 AL118520.1-201ENST00000450770 291 ntBASIC2.71□□□□□ -1.98
UPF3AQ9H1J1 ZEB1-AS1-204ENST00000450834 576 ntTSL 3 BASIC2.71□□□□□ -1.98
UPF3AQ9H1J1 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC2.71□□□□□ -1.98
UPF3AQ9H1J1 AL356010.1-201ENST00000456364 102 ntBASIC2.71□□□□□ -1.98
UPF3AQ9H1J1 AL162395.1-201ENST00000457882 422 ntBASIC2.71□□□□□ -1.98
UPF3AQ9H1J1 AL049874.1-201ENST00000489560 388 ntBASIC2.71□□□□□ -1.98
UPF3AQ9H1J1 AIG1P1-201ENST00000503376 148 ntBASIC2.71□□□□□ -1.98
UPF3AQ9H1J1 AC116353.2-201ENST00000505332 712 ntBASIC2.71□□□□□ -1.98
UPF3AQ9H1J1 AC116562.3-201ENST00000506136 177 ntBASIC2.71□□□□□ -1.98
UPF3AQ9H1J1 RNU6-1281P-201ENST00000516223 105 ntBASIC2.71□□□□□ -1.98
UPF3AQ9H1J1 RNU6-390P-201ENST00000516259 103 ntBASIC2.71□□□□□ -1.98
UPF3AQ9H1J1 RNA5SP281-201ENST00000516504 135 ntBASIC2.71□□□□□ -1.98
UPF3AQ9H1J1 CKS1BP7-201ENST00000522230 235 ntBASIC2.71□□□□□ -1.98
UPF3AQ9H1J1 AP001804.3-201ENST00000525146 880 ntBASIC2.71□□□□□ -1.98
UPF3AQ9H1J1 AC068587.5-201ENST00000528506 175 ntBASIC2.71□□□□□ -1.98
UPF3AQ9H1J1 OR4R1P-201ENST00000529879 463 ntBASIC2.71□□□□□ -1.98
UPF3AQ9H1J1 AC021269.2-201ENST00000532318 330 ntBASIC2.71□□□□□ -1.98
UPF3AQ9H1J1 OR5BN1P-201ENST00000532955 829 ntBASIC2.71□□□□□ -1.98
UPF3AQ9H1J1 AC004486.1-201ENST00000546846 233 ntBASIC2.71□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 115.5 ms