Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC3.33□□□□□ -1.88
CHMP4AQ9BY43 RBBP8P1-201ENST00000449447 1844 ntBASIC3.33□□□□□ -1.88
CHMP4AQ9BY43 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC3.33□□□□□ -1.88
CHMP4AQ9BY43 AL136360.1-201ENST00000503377 1900 ntBASIC3.33□□□□□ -1.88
CHMP4AQ9BY43 MIR592-201ENST00000384959 97 ntBASIC3.33□□□□□ -1.88
CHMP4AQ9BY43 MIR181B1-201ENST00000385240 110 ntBASIC3.33□□□□□ -1.88
CHMP4AQ9BY43 CISD1P1-201ENST00000393907 327 ntBASIC3.33□□□□□ -1.88
CHMP4AQ9BY43 AL356057.3-201ENST00000402607 340 ntBASIC3.33□□□□□ -1.88
CHMP4AQ9BY43 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC3.33□□□□□ -1.88
CHMP4AQ9BY43 AC016831.2-201ENST00000417179 352 ntBASIC3.33□□□□□ -1.88
CHMP4AQ9BY43 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC3.33□□□□□ -1.88
CHMP4AQ9BY43 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC3.33□□□□□ -1.88
CHMP4AQ9BY43 PGBD4P3-201ENST00000440731 581 ntBASIC3.33□□□□□ -1.88
CHMP4AQ9BY43 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC3.33□□□□□ -1.88
CHMP4AQ9BY43 AC108938.1-201ENST00000451204 136 ntBASIC3.33□□□□□ -1.88
CHMP4AQ9BY43 AC126389.1-201ENST00000477436 290 ntBASIC3.33□□□□□ -1.88
CHMP4AQ9BY43 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC3.33□□□□□ -1.88
CHMP4AQ9BY43 RNU6-410P-201ENST00000517006 107 ntBASIC3.33□□□□□ -1.88
CHMP4AQ9BY43 AC023866.1-201ENST00000518064 579 ntTSL 4 BASIC3.33□□□□□ -1.88
CHMP4AQ9BY43 AC243972.3-201ENST00000539655 198 ntBASIC3.33□□□□□ -1.88
CHMP4AQ9BY43 AP002770.2-201ENST00000543613 532 ntBASIC3.33□□□□□ -1.88
CHMP4AQ9BY43 AC044840.1-201ENST00000577641 472 ntTSL 3 BASIC3.33□□□□□ -1.88
CHMP4AQ9BY43 AC022960.1-201ENST00000582269 348 ntTSL 3 BASIC3.33□□□□□ -1.88
CHMP4AQ9BY43 AC009977.1-201ENST00000586015 570 ntBASIC3.33□□□□□ -1.88
CHMP4AQ9BY43 WISP1-OT1-201ENST00000602893 642 ntBASIC3.33□□□□□ -1.88
CHMP4AQ9BY43 AL713866.2-201ENST00000603579 219 ntBASIC3.33□□□□□ -1.88
CHMP4AQ9BY43 AC026790.2-201ENST00000606282 430 ntBASIC3.33□□□□□ -1.88
CHMP4AQ9BY43 AC098614.4-201ENST00000607601 462 ntBASIC3.33□□□□□ -1.88
CHMP4AQ9BY43 AC011890.2-201ENST00000613393 294 ntBASIC3.33□□□□□ -1.88
CHMP4AQ9BY43 uc_338.15-201ENST00000615470 191 ntBASIC3.33□□□□□ -1.88
CHMP4AQ9BY43 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
CHMP4AQ9BY43 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
CHMP4AQ9BY43 RNU1-72P-201ENST00000362976 153 ntBASIC3.32□□□□□ -1.88
CHMP4AQ9BY43 RNU6-39P-201ENST00000384344 107 ntBASIC3.32□□□□□ -1.88
CHMP4AQ9BY43 SNORA24.1-201ENST00000384401 135 ntBASIC3.32□□□□□ -1.88
CHMP4AQ9BY43 AL590004.2-201ENST00000404787 371 ntBASIC3.32□□□□□ -1.88
CHMP4AQ9BY43 HNRNPDLP1-201ENST00000412834 550 ntBASIC3.32□□□□□ -1.88
CHMP4AQ9BY43 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC3.32□□□□□ -1.88
CHMP4AQ9BY43 MTND6P13-201ENST00000443510 523 ntBASIC3.32□□□□□ -1.88
CHMP4AQ9BY43 RPS27AP9-201ENST00000477681 438 ntBASIC3.32□□□□□ -1.88
CHMP4AQ9BY43 AC117460.1-201ENST00000508964 467 ntTSL 3 BASIC3.32□□□□□ -1.88
CHMP4AQ9BY43 RNU4-29P-201ENST00000515943 174 ntBASIC3.32□□□□□ -1.88
CHMP4AQ9BY43 AC022616.3-201ENST00000523940 148 ntBASIC3.32□□□□□ -1.88
CHMP4AQ9BY43 AP003730.2-202ENST00000527281 774 ntTSL 3 BASIC3.32□□□□□ -1.88
CHMP4AQ9BY43 AL137804.1-201ENST00000528872 576 ntTSL 3 BASIC3.32□□□□□ -1.88
CHMP4AQ9BY43 AC007229.1-201ENST00000590455 412 ntBASIC3.32□□□□□ -1.88
CHMP4AQ9BY43 AC023043.3-201ENST00000593113 385 ntBASIC3.32□□□□□ -1.88
CHMP4AQ9BY43 AC093788.1-201ENST00000609356 927 ntBASIC3.32□□□□□ -1.88
CHMP4AQ9BY43 MIR6817-201ENST00000615588 66 ntBASIC3.32□□□□□ -1.88
CHMP4AQ9BY43 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC3.32□□□□□ -1.88
CHMP4AQ9BY43 SATB1-AS1-227ENST00000625533 743 ntTSL 5 BASIC3.32□□□□□ -1.88
CHMP4AQ9BY43 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC3.32□□□□□ -1.88
CHMP4AQ9BY43 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
CHMP4AQ9BY43 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
CHMP4AQ9BY43 SNORA75B-201ENST00000384053 137 ntBASIC3.31□□□□□ -1.88
CHMP4AQ9BY43 UBE2V1P10-201ENST00000414685 269 ntBASIC3.31□□□□□ -1.88
CHMP4AQ9BY43 EDDM3CP-201ENST00000415977 425 ntBASIC3.31□□□□□ -1.88
CHMP4AQ9BY43 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC3.31□□□□□ -1.88
CHMP4AQ9BY43 USP9YP20-201ENST00000419224 558 ntBASIC3.31□□□□□ -1.88
CHMP4AQ9BY43 AC092839.1-201ENST00000433475 536 ntTSL 4 BASIC3.31□□□□□ -1.88
CHMP4AQ9BY43 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC3.31□□□□□ -1.88
CHMP4AQ9BY43 AC073614.1-201ENST00000438690 650 ntBASIC3.31□□□□□ -1.88
CHMP4AQ9BY43 AC104058.1-201ENST00000448028 297 ntBASIC3.31□□□□□ -1.88
CHMP4AQ9BY43 GSTA11P-201ENST00000452866 669 ntBASIC3.31□□□□□ -1.88
CHMP4AQ9BY43 UBE2DNL-203ENST00000474922 222 ntBASIC3.31□□□□□ -1.88
CHMP4AQ9BY43 AC116562.3-201ENST00000506136 177 ntBASIC3.31□□□□□ -1.88
CHMP4AQ9BY43 AC079140.5-201ENST00000507882 310 ntBASIC3.31□□□□□ -1.88
CHMP4AQ9BY43 RNU7-193P-201ENST00000516723 65 ntBASIC3.31□□□□□ -1.88
CHMP4AQ9BY43 AC068587.5-201ENST00000528506 175 ntBASIC3.31□□□□□ -1.88
CHMP4AQ9BY43 AC011611.4-201ENST00000547721 779 ntTSL 2 BASIC3.31□□□□□ -1.88
CHMP4AQ9BY43 AC012065.4-201ENST00000602445 679 ntBASIC3.31□□□□□ -1.88
CHMP4AQ9BY43 AC091304.9-201ENST00000612091 226 ntBASIC3.31□□□□□ -1.88
CHMP4AQ9BY43 uc_338.11-201ENST00000619132 160 ntBASIC3.31□□□□□ -1.88
CHMP4AQ9BY43 AC010378.1-201ENST00000619270 362 ntBASIC3.31□□□□□ -1.88
CHMP4AQ9BY43 AC025034.2-201ENST00000623264 286 ntBASIC3.31□□□□□ -1.88
CHMP4AQ9BY43 AC007494.3-201ENST00000624660 743 ntBASIC3.31□□□□□ -1.88
CHMP4AQ9BY43 AC019226.2-201ENST00000625973 424 ntBASIC3.31□□□□□ -1.88
CHMP4AQ9BY43 WARS-244ENST00000627608 123 ntTSL 5 BASIC3.31□□□□□ -1.88
CHMP4AQ9BY43 RNU6-942P-201ENST00000363002 107 ntBASIC3.3□□□□□ -1.88
CHMP4AQ9BY43 Y_RNA.169-201ENST00000363745 96 ntBASIC3.3□□□□□ -1.88
CHMP4AQ9BY43 RNU4-91P-201ENST00000364778 135 ntBASIC3.3□□□□□ -1.88
CHMP4AQ9BY43 RNU6-1179P-201ENST00000384667 107 ntBASIC3.3□□□□□ -1.88
CHMP4AQ9BY43 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
CHMP4AQ9BY43 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC3.3□□□□□ -1.88
CHMP4AQ9BY43 MTCO3P5-201ENST00000433620 714 ntBASIC3.3□□□□□ -1.88
CHMP4AQ9BY43 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC3.3□□□□□ -1.88
CHMP4AQ9BY43 AC079340.1-201ENST00000504799 552 ntTSL 4 BASIC3.3□□□□□ -1.88
CHMP4AQ9BY43 AC010486.1-201ENST00000511793 424 ntBASIC3.3□□□□□ -1.88
CHMP4AQ9BY43 RNU6-685P-201ENST00000517088 95 ntBASIC3.3□□□□□ -1.88
CHMP4AQ9BY43 RNU6-586P-201ENST00000517265 104 ntBASIC3.3□□□□□ -1.88
CHMP4AQ9BY43 AC087318.1-201ENST00000536786 389 ntTSL 3 BASIC3.3□□□□□ -1.88
CHMP4AQ9BY43 IMMP1LP2-201ENST00000552954 492 ntBASIC3.3□□□□□ -1.88
CHMP4AQ9BY43 RPL30P11-203ENST00000598995 310 ntBASIC3.3□□□□□ -1.88
CHMP4AQ9BY43 AL121917.1-203ENST00000605534 577 ntBASIC3.3□□□□□ -1.88
CHMP4AQ9BY43 AP001486.3-201ENST00000615334 372 ntBASIC3.3□□□□□ -1.88
CHMP4AQ9BY43 AL603755.1-201ENST00000619504 163 ntBASIC3.3□□□□□ -1.88
CHMP4AQ9BY43 AC007792.1-201ENST00000623023 402 ntBASIC3.3□□□□□ -1.88
CHMP4AQ9BY43 CTSLP2-204ENST00000629029 392 ntBASIC3.3□□□□□ -1.88
CHMP4AQ9BY43 FARSBP1-201ENST00000435808 1778 ntBASIC3.3□□□□□ -1.88
CHMP4AQ9BY43 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC3.3□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 102.5 ms