Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 AC007151.1-201ENST00000572774 483 ntBASIC2.12□□□□□ -2.07
SKA3Q8IX90 MIR1273C-201ENST00000578669 77 ntBASIC2.12□□□□□ -2.07
SKA3Q8IX90 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC2.12□□□□□ -2.07
SKA3Q8IX90 AC096708.3-201ENST00000584226 559 ntTSL 2 BASIC2.12□□□□□ -2.07
SKA3Q8IX90 AC098848.2-201ENST00000588023 330 ntBASIC2.12□□□□□ -2.07
SKA3Q8IX90 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC2.12□□□□□ -2.07
SKA3Q8IX90 LINC00907-210ENST00000593316 847 ntTSL 3 BASIC2.12□□□□□ -2.07
SKA3Q8IX90 AL022154.1-201ENST00000604698 785 ntBASIC2.12□□□□□ -2.07
SKA3Q8IX90 AC087752.4-201ENST00000605911 462 ntBASIC2.12□□□□□ -2.07
SKA3Q8IX90 AC135507.1-201ENST00000607214 561 ntBASIC2.12□□□□□ -2.07
SKA3Q8IX90 AC109347.2-201ENST00000610220 349 ntBASIC2.12□□□□□ -2.07
SKA3Q8IX90 AC010678.1-201ENST00000614118 713 ntBASIC2.12□□□□□ -2.07
SKA3Q8IX90 AC243829.7-201ENST00000633081 225 ntBASIC2.12□□□□□ -2.07
SKA3Q8IX90 Clostridiales-1.3-201ENST00000637703 147 ntBASIC2.12□□□□□ -2.07
SKA3Q8IX90 MIR7515-201ENST00000637837 67 ntBASIC2.12□□□□□ -2.07
SKA3Q8IX90 CD44-239ENST00000639002 528 ntTSL 1 (best) BASIC2.12□□□□□ -2.07
SKA3Q8IX90 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC2.12□□□□□ -2.07
SKA3Q8IX90 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC2.12□□□□□ -2.07
SKA3Q8IX90 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC2.11□□□□□ -2.07
SKA3Q8IX90 ZNF658B-202ENST00000615961 3375 ntBASIC2.11□□□□□ -2.07
SKA3Q8IX90 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC2.11□□□□□ -2.07
SKA3Q8IX90 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC2.11□□□□□ -2.07
SKA3Q8IX90 RNU6-282P-201ENST00000365357 103 ntBASIC2.11□□□□□ -2.07
SKA3Q8IX90 RNU6-108P-201ENST00000365558 107 ntBASIC2.11□□□□□ -2.07
SKA3Q8IX90 RNU6-1083P-201ENST00000384022 107 ntBASIC2.11□□□□□ -2.07
SKA3Q8IX90 RNU1-52P-201ENST00000384190 164 ntBASIC2.11□□□□□ -2.07
SKA3Q8IX90 SNORD116-2-201ENST00000384274 95 ntBASIC2.11□□□□□ -2.07
SKA3Q8IX90 SNORD116-6-201ENST00000384711 96 ntBASIC2.11□□□□□ -2.07
SKA3Q8IX90 UBE2V1P2-201ENST00000397758 440 ntBASIC2.11□□□□□ -2.07
SKA3Q8IX90 LINC01312-201ENST00000412745 775 ntTSL 3 BASIC2.11□□□□□ -2.07
SKA3Q8IX90 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC2.11□□□□□ -2.07
SKA3Q8IX90 PTGES3P4-201ENST00000426243 356 ntBASIC2.11□□□□□ -2.07
SKA3Q8IX90 MTND4P32-201ENST00000437189 1237 ntBASIC2.11□□□□□ -2.07
SKA3Q8IX90 AC018693.1-201ENST00000442829 550 ntTSL 4 BASIC2.11□□□□□ -2.07
SKA3Q8IX90 AC079781.2-201ENST00000446424 169 ntBASIC2.11□□□□□ -2.07
SKA3Q8IX90 AP000477.2-201ENST00000447405 778 ntTSL 3 BASIC2.11□□□□□ -2.07
SKA3Q8IX90 AL583843.1-201ENST00000456070 346 ntBASIC2.11□□□□□ -2.07
SKA3Q8IX90 AC079943.2-201ENST00000488999 716 ntTSL 3 BASIC2.11□□□□□ -2.07
SKA3Q8IX90 AC079804.2-201ENST00000490376 200 ntBASIC2.11□□□□□ -2.07
SKA3Q8IX90 AC023194.1-201ENST00000493084 308 ntBASIC2.11□□□□□ -2.07
SKA3Q8IX90 GZMAP1-201ENST00000503054 631 ntBASIC2.11□□□□□ -2.07
SKA3Q8IX90 FAM92A1P2-202ENST00000504766 877 ntBASIC2.11□□□□□ -2.07
SKA3Q8IX90 RNU6-581P-201ENST00000516214 105 ntBASIC2.11□□□□□ -2.07
SKA3Q8IX90 SNORA31.6-201ENST00000516241 130 ntBASIC2.11□□□□□ -2.07
SKA3Q8IX90 AP003072.2-201ENST00000527756 676 ntBASIC2.11□□□□□ -2.07
SKA3Q8IX90 RANP3-201ENST00000530970 276 ntBASIC2.11□□□□□ -2.07
SKA3Q8IX90 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC2.11□□□□□ -2.07
SKA3Q8IX90 MIR4672-201ENST00000583126 81 ntBASIC2.11□□□□□ -2.07
SKA3Q8IX90 MIR548AC-201ENST00000585049 88 ntBASIC2.11□□□□□ -2.07
SKA3Q8IX90 AC008521.1-201ENST00000587471 187 ntBASIC2.11□□□□□ -2.07
SKA3Q8IX90 AC010620.1-201ENST00000601088 1102 ntBASIC2.11□□□□□ -2.07
SKA3Q8IX90 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC2.11□□□□□ -2.07
SKA3Q8IX90 MIR6134-201ENST00000617606 109 ntBASIC2.11□□□□□ -2.07
SKA3Q8IX90 MIR6852-201ENST00000621699 66 ntBASIC2.11□□□□□ -2.07
SKA3Q8IX90 AC090582.1-201ENST00000636321 199 ntBASIC2.11□□□□□ -2.07
SKA3Q8IX90 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC2.11□□□□□ -2.07
SKA3Q8IX90 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC2.11□□□□□ -2.07
SKA3Q8IX90 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC2.1□□□□□ -2.07
SKA3Q8IX90 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC2.1□□□□□ -2.07
SKA3Q8IX90 SPAG11A-202ENST00000326625 445 ntTSL 5 BASIC2.1□□□□□ -2.07
SKA3Q8IX90 AL596028.1-201ENST00000326971 197 ntBASIC2.1□□□□□ -2.07
SKA3Q8IX90 SNORA62.1-201ENST00000364287 154 ntBASIC2.1□□□□□ -2.07
SKA3Q8IX90 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC2.1□□□□□ -2.07
SKA3Q8IX90 SNORA75-201ENST00000384158 137 ntBASIC2.1□□□□□ -2.07
SKA3Q8IX90 Y_RNA.553-201ENST00000384670 102 ntBASIC2.1□□□□□ -2.07
SKA3Q8IX90 MIR1-2-201ENST00000384961 85 ntBASIC2.1□□□□□ -2.07
SKA3Q8IX90 RNA5SP111-201ENST00000411386 101 ntBASIC2.1□□□□□ -2.07
SKA3Q8IX90 AL031779.1-201ENST00000415663 330 ntBASIC2.1□□□□□ -2.07
SKA3Q8IX90 MTCO2P34-201ENST00000421994 607 ntBASIC2.1□□□□□ -2.07
SKA3Q8IX90 WARS2P1-201ENST00000429678 537 ntBASIC2.1□□□□□ -2.07
SKA3Q8IX90 INTS6L-AS1-201ENST00000430820 398 ntTSL 3 BASIC2.1□□□□□ -2.07
SKA3Q8IX90 AL358934.1-201ENST00000432346 324 ntBASIC2.1□□□□□ -2.07
SKA3Q8IX90 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC2.1□□□□□ -2.07
SKA3Q8IX90 AL360221.1-201ENST00000445989 335 ntBASIC2.1□□□□□ -2.07
SKA3Q8IX90 IFNA11P-201ENST00000446352 526 ntBASIC2.1□□□□□ -2.07
SKA3Q8IX90 AC003071.1-201ENST00000451219 789 ntBASIC2.1□□□□□ -2.07
SKA3Q8IX90 BTF3P15-201ENST00000455606 336 ntBASIC2.1□□□□□ -2.07
SKA3Q8IX90 RNU7-26P-201ENST00000458980 63 ntBASIC2.1□□□□□ -2.07
SKA3Q8IX90 AL121769.1-201ENST00000469473 401 ntBASIC2.1□□□□□ -2.07
SKA3Q8IX90 AC022493.1-201ENST00000492984 337 ntBASIC2.1□□□□□ -2.07
SKA3Q8IX90 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC2.1□□□□□ -2.07
SKA3Q8IX90 AKIRIN2P1-201ENST00000505898 352 ntBASIC2.1□□□□□ -2.07
SKA3Q8IX90 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC2.1□□□□□ -2.07
SKA3Q8IX90 AC026436.1-201ENST00000510537 270 ntBASIC2.1□□□□□ -2.07
SKA3Q8IX90 AC112206.3-201ENST00000514578 389 ntBASIC2.1□□□□□ -2.07
SKA3Q8IX90 IGHVIII-5-1-201ENST00000523059 99 ntBASIC2.1□□□□□ -2.07
SKA3Q8IX90 AC025871.1-201ENST00000523935 443 ntTSL 2 BASIC2.1□□□□□ -2.07
SKA3Q8IX90 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC2.1□□□□□ -2.07
SKA3Q8IX90 OR5AL2P-201ENST00000532185 920 ntBASIC2.1□□□□□ -2.07
SKA3Q8IX90 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC2.1□□□□□ -2.07
SKA3Q8IX90 AC068790.2-201ENST00000602601 557 ntBASIC2.1□□□□□ -2.07
SKA3Q8IX90 AC091152.3-201ENST00000604227 325 ntBASIC2.1□□□□□ -2.07
SKA3Q8IX90 AC099842.1-201ENST00000619919 596 ntBASIC2.1□□□□□ -2.07
SKA3Q8IX90 AL359740.1-201ENST00000624340 592 ntBASIC2.1□□□□□ -2.07
SKA3Q8IX90 CTSLP2-204ENST00000629029 392 ntBASIC2.1□□□□□ -2.07
SKA3Q8IX90 NANOGNB-202ENST00000640040 824 ntAPPRIS ALT2 TSL 5 BASIC2.1□□□□□ -2.07
SKA3Q8IX90 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC2.1□□□□□ -2.07
SKA3Q8IX90 AC004944.1-201ENST00000517807 3059 ntBASIC2.1□□□□□ -2.07
SKA3Q8IX90 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC2.09□□□□□ -2.07
SKA3Q8IX90 CDC27P3-201ENST00000635418 1910 ntBASIC2.09□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 232.8 ms