Protein–RNA interactions for Protein: Q70EK8

USP53, Inactive ubiquitin carboxyl-terminal hydrolase 53, humanhuman

Predictions only

Length 1,073 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP53Q70EK8 HMGN2P16-201ENST00000456802 261 ntBASIC3.95□□□□□ -1.78
USP53Q70EK8 RPS29P27-201ENST00000463711 170 ntBASIC3.95□□□□□ -1.78
USP53Q70EK8 RPS4XP13-201ENST00000483219 789 ntBASIC3.95□□□□□ -1.78
USP53Q70EK8 ENSA-210ENST00000503241 574 ntTSL 3 BASIC3.95□□□□□ -1.78
USP53Q70EK8 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC3.95□□□□□ -1.78
USP53Q70EK8 LINC01479-202ENST00000546170 444 ntTSL 2 BASIC3.95□□□□□ -1.78
USP53Q70EK8 LINC02459-201ENST00000551761 474 ntTSL 3 BASIC3.95□□□□□ -1.78
USP53Q70EK8 LINC00933-203ENST00000559812 219 ntBASIC3.95□□□□□ -1.78
USP53Q70EK8 UBE2Q2P8-201ENST00000560644 102 ntBASIC3.95□□□□□ -1.78
USP53Q70EK8 VN1R107P-201ENST00000601784 209 ntBASIC3.95□□□□□ -1.78
USP53Q70EK8 AL161756.2-201ENST00000604597 246 ntBASIC3.95□□□□□ -1.78
USP53Q70EK8 AC012468.1-201ENST00000604888 430 ntBASIC3.95□□□□□ -1.78
USP53Q70EK8 PRR13P7-201ENST00000605538 430 ntBASIC3.95□□□□□ -1.78
USP53Q70EK8 AC008962.1-201ENST00000605729 304 ntBASIC3.95□□□□□ -1.78
USP53Q70EK8 AC064801.1-201ENST00000612025 407 ntBASIC3.95□□□□□ -1.78
USP53Q70EK8 AC010205.1-201ENST00000616668 449 ntBASIC3.95□□□□□ -1.78
USP53Q70EK8 MIR7151-201ENST00000617477 60 ntBASIC3.95□□□□□ -1.78
USP53Q70EK8 AC090617.7-201ENST00000623952 126 ntBASIC3.95□□□□□ -1.78
USP53Q70EK8 AC012442.3-202ENST00000636742 206 ntBASIC3.95□□□□□ -1.78
USP53Q70EK8 MGAT4A-204ENST00000414521 3709 ntTSL 2 BASIC3.95□□□□□ -1.78
USP53Q70EK8 CRB1-201ENST00000367397 9023 ntTSL 2 BASIC3.95□□□□□ -1.78
USP53Q70EK8 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC3.95□□□□□ -1.78
USP53Q70EK8 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
USP53Q70EK8 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC3.94□□□□□ -1.78
USP53Q70EK8 SRP72P2-201ENST00000344851 1979 ntBASIC3.94□□□□□ -1.78
USP53Q70EK8 GPRC6A-201ENST00000310357 2860 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
USP53Q70EK8 MBNL1-211ENST00000463374 5092 ntAPPRIS P4 TSL 1 (best) BASIC3.94□□□□□ -1.78
USP53Q70EK8 SNORD50.1-201ENST00000362987 71 ntBASIC3.94□□□□□ -1.78
USP53Q70EK8 U3.6-201ENST00000363622 211 ntBASIC3.94□□□□□ -1.78
USP53Q70EK8 RNU6-595P-201ENST00000363944 107 ntBASIC3.94□□□□□ -1.78
USP53Q70EK8 RNU4-42P-201ENST00000364738 142 ntBASIC3.94□□□□□ -1.78
USP53Q70EK8 Y_RNA.452-201ENST00000384202 108 ntBASIC3.94□□□□□ -1.78
USP53Q70EK8 MIR483-201ENST00000385070 76 ntBASIC3.94□□□□□ -1.78
USP53Q70EK8 HSPE1P26-201ENST00000405341 275 ntBASIC3.94□□□□□ -1.78
USP53Q70EK8 MTND3P9-201ENST00000429526 346 ntBASIC3.94□□□□□ -1.78
USP53Q70EK8 TBCAP1-201ENST00000436520 327 ntBASIC3.94□□□□□ -1.78
USP53Q70EK8 AC098831.1-201ENST00000440661 216 ntBASIC3.94□□□□□ -1.78
USP53Q70EK8 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC3.94□□□□□ -1.78
USP53Q70EK8 AL500522.2-201ENST00000448562 343 ntBASIC3.94□□□□□ -1.78
USP53Q70EK8 RPL37P4-201ENST00000448908 268 ntBASIC3.94□□□□□ -1.78
USP53Q70EK8 CHEK2P4-201ENST00000450340 246 ntBASIC3.94□□□□□ -1.78
USP53Q70EK8 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC3.94□□□□□ -1.78
USP53Q70EK8 U8.20-201ENST00000459445 131 ntBASIC3.94□□□□□ -1.78
USP53Q70EK8 RN7SL585P-201ENST00000470538 280 ntBASIC3.94□□□□□ -1.78
USP53Q70EK8 LINC02110-201ENST00000503870 546 ntTSL 3 BASIC3.94□□□□□ -1.78
USP53Q70EK8 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC3.94□□□□□ -1.78
USP53Q70EK8 AC026726.1-201ENST00000512859 601 ntBASIC3.94□□□□□ -1.78
USP53Q70EK8 AC112196.1-201ENST00000515092 832 ntTSL 3 BASIC3.94□□□□□ -1.78
USP53Q70EK8 RNU7-4P-201ENST00000516961 62 ntBASIC3.94□□□□□ -1.78
USP53Q70EK8 AP004607.1-201ENST00000524456 203 ntBASIC3.94□□□□□ -1.78
USP53Q70EK8 AMZ2P1-203ENST00000565833 850 ntBASIC3.94□□□□□ -1.78
USP53Q70EK8 AC092138.1-201ENST00000568659 472 ntTSL 2 BASIC3.94□□□□□ -1.78
USP53Q70EK8 AC011824.2-201ENST00000579896 579 ntTSL 4 BASIC3.94□□□□□ -1.78
USP53Q70EK8 MIR3149-201ENST00000584629 83 ntBASIC3.94□□□□□ -1.78
USP53Q70EK8 SNORA51-201ENST00000606420 132 ntBASIC3.94□□□□□ -1.78
USP53Q70EK8 AC092636.1-201ENST00000608609 415 ntTSL 2 BASIC3.94□□□□□ -1.78
USP53Q70EK8 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC3.94□□□□□ -1.78
USP53Q70EK8 AC009318.2-201ENST00000610917 651 ntBASIC3.94□□□□□ -1.78
USP53Q70EK8 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
USP53Q70EK8 FAM35BP-202ENST00000497389 3337 ntBASIC3.94□□□□□ -1.78
USP53Q70EK8 ENPP2-202ENST00000259486 3233 ntAPPRIS P3 TSL 1 (best) BASIC3.94□□□□□ -1.78
USP53Q70EK8 CLCA2-201ENST00000370565 4025 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
USP53Q70EK8 DOCK7-219ENST00000635253 6423 ntAPPRIS ALT2 TSL 5 BASIC3.94□□□□□ -1.78
USP53Q70EK8 CCSER1-201ENST00000432775 3927 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
USP53Q70EK8 AGTR2-201ENST00000371906 2882 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
USP53Q70EK8 ZNF705A-201ENST00000359286 3455 ntAPPRIS P1 TSL 2 BASIC3.93□□□□□ -1.78
USP53Q70EK8 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
USP53Q70EK8 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC3.93□□□□□ -1.78
USP53Q70EK8 AL591441.1-201ENST00000618108 2247 ntTSL 2 BASIC3.93□□□□□ -1.78
USP53Q70EK8 EPC1-203ENST00000375110 3909 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
USP53Q70EK8 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC3.93□□□□□ -1.78
USP53Q70EK8 Y_RNA.47-201ENST00000362697 108 ntBASIC3.93□□□□□ -1.78
USP53Q70EK8 SNORD35B-201ENST00000363660 87 ntBASIC3.93□□□□□ -1.78
USP53Q70EK8 EIF4EBP2P3-201ENST00000403144 334 ntBASIC3.93□□□□□ -1.78
USP53Q70EK8 RNU6-101P-201ENST00000410323 104 ntBASIC3.93□□□□□ -1.78
USP53Q70EK8 AC010745.2-201ENST00000420404 839 ntTSL 3 BASIC3.93□□□□□ -1.78
USP53Q70EK8 TMEM167AP1-201ENST00000423409 219 ntBASIC3.93□□□□□ -1.78
USP53Q70EK8 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC3.93□□□□□ -1.78
USP53Q70EK8 AC091493.1-201ENST00000426218 411 ntTSL 3 BASIC3.93□□□□□ -1.78
USP53Q70EK8 RPS3AP12-201ENST00000443616 753 ntBASIC3.93□□□□□ -1.78
USP53Q70EK8 HMGB3P8-201ENST00000449709 577 ntBASIC3.93□□□□□ -1.78
USP53Q70EK8 AC079354.2-201ENST00000453523 154 ntBASIC3.93□□□□□ -1.78
USP53Q70EK8 UBE2CP3-201ENST00000502715 450 ntBASIC3.93□□□□□ -1.78
USP53Q70EK8 AC017037.1-201ENST00000508460 471 ntBASIC3.93□□□□□ -1.78
USP53Q70EK8 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC3.93□□□□□ -1.78
USP53Q70EK8 SNORA40.14-201ENST00000516543 86 ntBASIC3.93□□□□□ -1.78
USP53Q70EK8 AC022616.4-201ENST00000522985 181 ntBASIC3.93□□□□□ -1.78
USP53Q70EK8 LINC02386-202ENST00000551287 564 ntTSL 4 BASIC3.93□□□□□ -1.78
USP53Q70EK8 AL160314.2-204ENST00000554730 380 ntTSL 5 BASIC3.93□□□□□ -1.78
USP53Q70EK8 HSBP1P1-201ENST00000555205 166 ntBASIC3.93□□□□□ -1.78
USP53Q70EK8 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC3.93□□□□□ -1.78
USP53Q70EK8 AC004817.2-201ENST00000561794 651 ntBASIC3.93□□□□□ -1.78
USP53Q70EK8 AC004584.2-201ENST00000570407 410 ntBASIC3.93□□□□□ -1.78
USP53Q70EK8 AC025627.2-201ENST00000576220 160 ntBASIC3.93□□□□□ -1.78
USP53Q70EK8 AC024153.1-201ENST00000603103 365 ntBASIC3.93□□□□□ -1.78
USP53Q70EK8 MIR6868-201ENST00000611215 58 ntBASIC3.93□□□□□ -1.78
USP53Q70EK8 AC019176.2-201ENST00000611579 315 ntBASIC3.93□□□□□ -1.78
USP53Q70EK8 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC3.93□□□□□ -1.78
USP53Q70EK8 AC091953.5-201ENST00000622919 233 ntBASIC3.93□□□□□ -1.78
USP53Q70EK8 AC138305.3-201ENST00000624988 240 ntBASIC3.93□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 165.1 ms