Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 AL583843.1-201ENST00000456070 346 ntBASIC2.65□□□□□ -1.99
PDLIM3Q53GG5 AL160162.1-201ENST00000456715 442 ntTSL 3 BASIC2.65□□□□□ -1.99
PDLIM3Q53GG5 SCARNA18-201ENST00000459004 134 ntBASIC2.65□□□□□ -1.99
PDLIM3Q53GG5 RPL21P41-201ENST00000459863 264 ntBASIC2.65□□□□□ -1.99
PDLIM3Q53GG5 TRBV1-201ENST00000476502 284 ntBASIC2.65□□□□□ -1.99
PDLIM3Q53GG5 AL627309.4-201ENST00000496488 457 ntTSL 5 BASIC2.65□□□□□ -1.99
PDLIM3Q53GG5 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC2.65□□□□□ -1.99
PDLIM3Q53GG5 LINC01333-201ENST00000508083 724 ntTSL 1 (best) BASIC2.65□□□□□ -1.99
PDLIM3Q53GG5 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC2.65□□□□□ -1.99
PDLIM3Q53GG5 AC113385.1-201ENST00000511468 563 ntTSL 4 BASIC2.65□□□□□ -1.99
PDLIM3Q53GG5 TBCAP3-201ENST00000512475 312 ntBASIC2.65□□□□□ -1.99
PDLIM3Q53GG5 SNORA31.19-201ENST00000517079 126 ntBASIC2.65□□□□□ -1.99
PDLIM3Q53GG5 AC009902.1-201ENST00000519351 183 ntBASIC2.65□□□□□ -1.99
PDLIM3Q53GG5 AC103853.2-201ENST00000519805 716 ntTSL 3 BASIC2.65□□□□□ -1.99
PDLIM3Q53GG5 C14orf105-204ENST00000526336 598 ntTSL 4 BASIC2.65□□□□□ -1.99
PDLIM3Q53GG5 OR5BN1P-201ENST00000532955 829 ntBASIC2.65□□□□□ -1.99
PDLIM3Q53GG5 MIR1273C-201ENST00000578669 77 ntBASIC2.65□□□□□ -1.99
PDLIM3Q53GG5 BNIP3P30-201ENST00000601184 574 ntBASIC2.65□□□□□ -1.99
PDLIM3Q53GG5 AL162413.1-201ENST00000603198 110 ntBASIC2.65□□□□□ -1.99
PDLIM3Q53GG5 RPL23AP88-201ENST00000605759 454 ntBASIC2.65□□□□□ -1.99
PDLIM3Q53GG5 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC2.65□□□□□ -1.99
PDLIM3Q53GG5 MIR7111-201ENST00000619751 72 ntBASIC2.65□□□□□ -1.99
PDLIM3Q53GG5 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC2.65□□□□□ -1.99
PDLIM3Q53GG5 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC2.65□□□□□ -1.99
PDLIM3Q53GG5 AP3S1-209ENST00000640413 489 ntTSL 5 BASIC2.65□□□□□ -1.99
PDLIM3Q53GG5 AL136360.1-201ENST00000503377 1900 ntBASIC2.65□□□□□ -1.99
PDLIM3Q53GG5 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC2.65□□□□□ -1.99
PDLIM3Q53GG5 AC108206.1-201ENST00000570186 4159 ntBASIC2.64□□□□□ -1.99
PDLIM3Q53GG5 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC2.64□□□□□ -1.99
PDLIM3Q53GG5 RNU1-73P-201ENST00000383971 164 ntBASIC2.64□□□□□ -1.99
PDLIM3Q53GG5 SNORA75B-201ENST00000384053 137 ntBASIC2.64□□□□□ -1.99
PDLIM3Q53GG5 SNORD70.1-201ENST00000391007 85 ntBASIC2.64□□□□□ -1.99
PDLIM3Q53GG5 RPL21P3-201ENST00000395517 478 ntBASIC2.64□□□□□ -1.99
PDLIM3Q53GG5 RNU4-46P-201ENST00000410818 138 ntBASIC2.64□□□□□ -1.99
PDLIM3Q53GG5 RPL19P1-201ENST00000411635 428 ntBASIC2.64□□□□□ -1.99
PDLIM3Q53GG5 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC2.64□□□□□ -1.99
PDLIM3Q53GG5 EIF1P1-201ENST00000421436 341 ntBASIC2.64□□□□□ -1.99
PDLIM3Q53GG5 RBM6-203ENST00000421682 684 ntTSL 2 BASIC2.64□□□□□ -1.99
PDLIM3Q53GG5 AL139281.1-201ENST00000422120 335 ntBASIC2.64□□□□□ -1.99
PDLIM3Q53GG5 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC2.64□□□□□ -1.99
PDLIM3Q53GG5 AL358075.3-201ENST00000426289 226 ntBASIC2.64□□□□□ -1.99
PDLIM3Q53GG5 AP001117.1-201ENST00000428205 609 ntTSL 2 BASIC2.64□□□□□ -1.99
PDLIM3Q53GG5 LINC01626-201ENST00000431997 452 ntTSL 3 BASIC2.64□□□□□ -1.99
PDLIM3Q53GG5 AL591704.1-201ENST00000432574 275 ntBASIC2.64□□□□□ -1.99
PDLIM3Q53GG5 AL121601.2-201ENST00000438019 707 ntBASIC2.64□□□□□ -1.99
PDLIM3Q53GG5 SEPT14P3-201ENST00000439401 183 ntBASIC2.64□□□□□ -1.99
PDLIM3Q53GG5 AC092473.1-201ENST00000441098 221 ntBASIC2.64□□□□□ -1.99
PDLIM3Q53GG5 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC2.64□□□□□ -1.99
PDLIM3Q53GG5 AC024908.1-202ENST00000441907 764 ntTSL 2 BASIC2.64□□□□□ -1.99
PDLIM3Q53GG5 AC092802.2-202ENST00000444665 371 ntTSL 5 BASIC2.64□□□□□ -1.99
PDLIM3Q53GG5 AL732372.2-207ENST00000445840 183 ntBASIC2.64□□□□□ -1.99
PDLIM3Q53GG5 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC2.64□□□□□ -1.99
PDLIM3Q53GG5 SEPT14P2-201ENST00000453405 183 ntBASIC2.64□□□□□ -1.99
PDLIM3Q53GG5 AC233279.1-201ENST00000455300 423 ntBASIC2.64□□□□□ -1.99
PDLIM3Q53GG5 RNU6-261P-201ENST00000459506 102 ntBASIC2.64□□□□□ -1.99
PDLIM3Q53GG5 AC146507.2-201ENST00000460608 476 ntBASIC2.64□□□□□ -1.99
PDLIM3Q53GG5 RPL31P41-201ENST00000477967 372 ntBASIC2.64□□□□□ -1.99
PDLIM3Q53GG5 AC006445.1-201ENST00000491925 405 ntBASIC2.64□□□□□ -1.99
PDLIM3Q53GG5 AC022493.1-201ENST00000492984 337 ntBASIC2.64□□□□□ -1.99
PDLIM3Q53GG5 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC2.64□□□□□ -1.99
PDLIM3Q53GG5 LINC02377-202ENST00000505436 523 ntTSL 5 BASIC2.64□□□□□ -1.99
PDLIM3Q53GG5 MTND3P25-201ENST00000509243 135 ntBASIC2.64□□□□□ -1.99
PDLIM3Q53GG5 SEPT14P4-201ENST00000513445 186 ntBASIC2.64□□□□□ -1.99
PDLIM3Q53GG5 AC112206.3-201ENST00000514578 389 ntBASIC2.64□□□□□ -1.99
PDLIM3Q53GG5 RNA5SP356-201ENST00000515972 94 ntBASIC2.64□□□□□ -1.99
PDLIM3Q53GG5 RNU6-835P-201ENST00000516974 104 ntBASIC2.64□□□□□ -1.99
PDLIM3Q53GG5 MTND1P5-201ENST00000517906 940 ntBASIC2.64□□□□□ -1.99
PDLIM3Q53GG5 AC104211.3-201ENST00000518861 270 ntTSL 3 BASIC2.64□□□□□ -1.99
PDLIM3Q53GG5 FO082796.1-201ENST00000523795 183 ntBASIC2.64□□□□□ -1.99
PDLIM3Q53GG5 AC090124.2-201ENST00000527727 563 ntTSL 4 BASIC2.64□□□□□ -1.99
PDLIM3Q53GG5 AC109635.3-201ENST00000529536 185 ntBASIC2.64□□□□□ -1.99
PDLIM3Q53GG5 AC007536.1-201ENST00000533382 349 ntBASIC2.64□□□□□ -1.99
PDLIM3Q53GG5 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC2.64□□□□□ -1.99
PDLIM3Q53GG5 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC2.64□□□□□ -1.99
PDLIM3Q53GG5 AC012119.1-201ENST00000603184 222 ntBASIC2.64□□□□□ -1.99
PDLIM3Q53GG5 AC007014.2-201ENST00000615581 479 ntBASIC2.64□□□□□ -1.99
PDLIM3Q53GG5 AC159540.2-206ENST00000619371 355 ntTSL 3 BASIC2.64□□□□□ -1.99
PDLIM3Q53GG5 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC2.64□□□□□ -1.99
PDLIM3Q53GG5 MIR3688-2-201ENST00000636963 87 ntBASIC2.64□□□□□ -1.99
PDLIM3Q53GG5 PSMD5-AS1-215ENST00000640622 205 ntBASIC2.64□□□□□ -1.99
PDLIM3Q53GG5 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC2.63□□□□□ -1.99
PDLIM3Q53GG5 RNU1-70P-201ENST00000362618 164 ntBASIC2.63□□□□□ -1.99
PDLIM3Q53GG5 RNA5SP197-201ENST00000363357 119 ntBASIC2.63□□□□□ -1.99
PDLIM3Q53GG5 Y_RNA.256-201ENST00000364594 104 ntBASIC2.63□□□□□ -1.99
PDLIM3Q53GG5 RNU6-1303P-201ENST00000364841 107 ntBASIC2.63□□□□□ -1.99
PDLIM3Q53GG5 Y_RNA.295-201ENST00000364918 102 ntBASIC2.63□□□□□ -1.99
PDLIM3Q53GG5 CD3D-202ENST00000392884 476 ntTSL 2 BASIC2.63□□□□□ -1.99
PDLIM3Q53GG5 RNU2-49P-201ENST00000410666 184 ntBASIC2.63□□□□□ -1.99
PDLIM3Q53GG5 OFD1P1Y-201ENST00000411756 1225 ntBASIC2.63□□□□□ -1.99
PDLIM3Q53GG5 PGBD4P6-201ENST00000421501 610 ntBASIC2.63□□□□□ -1.99
PDLIM3Q53GG5 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC2.63□□□□□ -1.99
PDLIM3Q53GG5 RPL35AP12-201ENST00000425362 338 ntBASIC2.63□□□□□ -1.99
PDLIM3Q53GG5 USP9YP18-201ENST00000425912 695 ntBASIC2.63□□□□□ -1.99
PDLIM3Q53GG5 AC009414.1-201ENST00000427200 443 ntBASIC2.63□□□□□ -1.99
PDLIM3Q53GG5 ATP6V0E1P4-201ENST00000427294 242 ntBASIC2.63□□□□□ -1.99
PDLIM3Q53GG5 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC2.63□□□□□ -1.99
PDLIM3Q53GG5 AL592466.1-201ENST00000428346 307 ntTSL 5 BASIC2.63□□□□□ -1.99
PDLIM3Q53GG5 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC2.63□□□□□ -1.99
PDLIM3Q53GG5 Z75741.1-201ENST00000446793 314 ntBASIC2.63□□□□□ -1.99
PDLIM3Q53GG5 RPS15AP27-201ENST00000449183 343 ntBASIC2.63□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 132 ms