Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 EBAG9P1-201ENST00000418955 543 ntBASIC1.29□□□□□ -2.2
CCDC88AQ3V6T2 RPL17P35-201ENST00000432217 549 ntBASIC1.29□□□□□ -2.2
CCDC88AQ3V6T2 AL591704.1-201ENST00000432574 275 ntBASIC1.29□□□□□ -2.2
CCDC88AQ3V6T2 AL159990.2-201ENST00000436491 337 ntTSL 3 BASIC1.29□□□□□ -2.2
CCDC88AQ3V6T2 RPL22P13-201ENST00000493291 347 ntBASIC1.29□□□□□ -2.2
CCDC88AQ3V6T2 RNA5SP112-201ENST00000515937 99 ntBASIC1.29□□□□□ -2.2
CCDC88AQ3V6T2 NARSP2-202ENST00000522022 349 ntTSL 3 BASIC1.29□□□□□ -2.2
CCDC88AQ3V6T2 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC1.29□□□□□ -2.2
CCDC88AQ3V6T2 MRPL42-203ENST00000547098 701 ntTSL 3 BASIC1.29□□□□□ -2.2
CCDC88AQ3V6T2 PCLAF-207ENST00000559519 749 ntTSL 2 BASIC1.29□□□□□ -2.2
CCDC88AQ3V6T2 AC026271.5-201ENST00000577873 130 ntBASIC1.29□□□□□ -2.2
CCDC88AQ3V6T2 MIR4713-201ENST00000582691 75 ntBASIC1.29□□□□□ -2.2
CCDC88AQ3V6T2 AC004160.1-210ENST00000599875 689 ntTSL 5 BASIC1.29□□□□□ -2.2
CCDC88AQ3V6T2 AC005034.5-201ENST00000604219 466 ntBASIC1.29□□□□□ -2.2
CCDC88AQ3V6T2 AC099842.1-201ENST00000619919 596 ntBASIC1.29□□□□□ -2.2
CCDC88AQ3V6T2 AC080100.1-201ENST00000624239 5356 ntBASIC1.29□□□□□ -2.2
CCDC88AQ3V6T2 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC1.29□□□□□ -2.2
CCDC88AQ3V6T2 SNORD114-23-201ENST00000363536 72 ntBASIC1.29□□□□□ -2.2
CCDC88AQ3V6T2 RNU6-468P-201ENST00000384003 109 ntBASIC1.29□□□□□ -2.2
CCDC88AQ3V6T2 RNU6-1122P-201ENST00000384449 107 ntBASIC1.29□□□□□ -2.2
CCDC88AQ3V6T2 RNU6-1105P-201ENST00000384774 107 ntBASIC1.29□□□□□ -2.2
CCDC88AQ3V6T2 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC1.29□□□□□ -2.2
CCDC88AQ3V6T2 LINC01724-201ENST00000430519 621 ntTSL 3 BASIC1.29□□□□□ -2.2
CCDC88AQ3V6T2 AC092839.1-201ENST00000433475 536 ntTSL 4 BASIC1.29□□□□□ -2.2
CCDC88AQ3V6T2 AL512844.2-201ENST00000433990 593 ntBASIC1.29□□□□□ -2.2
CCDC88AQ3V6T2 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC1.29□□□□□ -2.2
CCDC88AQ3V6T2 MTCO3P45-201ENST00000443036 613 ntBASIC1.29□□□□□ -2.2
CCDC88AQ3V6T2 AC025428.1-201ENST00000444137 403 ntTSL 3 BASIC1.29□□□□□ -2.2
CCDC88AQ3V6T2 AC020550.1-201ENST00000447385 163 ntBASIC1.29□□□□□ -2.2
CCDC88AQ3V6T2 AL353718.1-201ENST00000451028 517 ntBASIC1.29□□□□□ -2.2
CCDC88AQ3V6T2 AC244505.3-201ENST00000454598 187 ntBASIC1.29□□□□□ -2.2
CCDC88AQ3V6T2 snoU13.8-201ENST00000458890 104 ntBASIC1.29□□□□□ -2.2
CCDC88AQ3V6T2 AC018437.1-201ENST00000492214 406 ntBASIC1.29□□□□□ -2.2
CCDC88AQ3V6T2 RPS27AP10-201ENST00000496103 208 ntBASIC1.29□□□□□ -2.2
CCDC88AQ3V6T2 AC026616.1-201ENST00000523157 525 ntBASIC1.29□□□□□ -2.2
CCDC88AQ3V6T2 AP003049.1-201ENST00000529418 457 ntBASIC1.29□□□□□ -2.2
CCDC88AQ3V6T2 CR383656.8-201ENST00000549046 145 ntBASIC1.29□□□□□ -2.2
CCDC88AQ3V6T2 SNRPGP1-201ENST00000553864 222 ntBASIC1.29□□□□□ -2.2
CCDC88AQ3V6T2 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC1.29□□□□□ -2.2
CCDC88AQ3V6T2 AC099811.4-201ENST00000592536 496 ntTSL 2 BASIC1.29□□□□□ -2.2
CCDC88AQ3V6T2 AC008277.1-203ENST00000594921 1149 ntTSL 5 BASIC1.29□□□□□ -2.2
CCDC88AQ3V6T2 AL050343.2-201ENST00000607338 280 ntBASIC1.29□□□□□ -2.2
CCDC88AQ3V6T2 AC009233.1-201ENST00000616477 371 ntBASIC1.29□□□□□ -2.2
CCDC88AQ3V6T2 Y_RNA.178-201ENST00000363832 102 ntBASIC1.28□□□□□ -2.2
CCDC88AQ3V6T2 SNORA62.1-201ENST00000364287 154 ntBASIC1.28□□□□□ -2.2
CCDC88AQ3V6T2 RNU6-1207P-201ENST00000384343 107 ntBASIC1.28□□□□□ -2.2
CCDC88AQ3V6T2 RNU6-952P-201ENST00000391164 108 ntBASIC1.28□□□□□ -2.2
CCDC88AQ3V6T2 RNU11-5P-201ENST00000391216 129 ntBASIC1.28□□□□□ -2.2
CCDC88AQ3V6T2 MIR1305-201ENST00000408300 86 ntBASIC1.28□□□□□ -2.2
CCDC88AQ3V6T2 LINC00446-202ENST00000438327 357 ntTSL 3 BASIC1.28□□□□□ -2.2
CCDC88AQ3V6T2 MTCO3P43-201ENST00000440974 771 ntBASIC1.28□□□□□ -2.2
CCDC88AQ3V6T2 HMGN2P10-201ENST00000448085 265 ntBASIC1.28□□□□□ -2.2
CCDC88AQ3V6T2 AC092264.1-201ENST00000456002 713 ntTSL 5 BASIC1.28□□□□□ -2.2
CCDC88AQ3V6T2 AL358176.1-201ENST00000457477 357 ntTSL 5 BASIC1.28□□□□□ -2.2
CCDC88AQ3V6T2 AC005410.1-202ENST00000460347 485 ntBASIC1.28□□□□□ -2.2
CCDC88AQ3V6T2 RPF2P2-201ENST00000504693 896 ntBASIC1.28□□□□□ -2.2
CCDC88AQ3V6T2 OR8K2P-201ENST00000524645 927 ntBASIC1.28□□□□□ -2.2
CCDC88AQ3V6T2 AP001189.2-201ENST00000527320 189 ntBASIC1.28□□□□□ -2.2
CCDC88AQ3V6T2 PPFIA2-AS1-205ENST00000550938 790 ntTSL 3 BASIC1.28□□□□□ -2.2
CCDC88AQ3V6T2 AL512347.1-201ENST00000566420 503 ntBASIC1.28□□□□□ -2.2
CCDC88AQ3V6T2 AL354696.1-201ENST00000614652 497 ntBASIC1.28□□□□□ -2.2
CCDC88AQ3V6T2 AP000943.4-201ENST00000622912 357 ntBASIC1.28□□□□□ -2.2
CCDC88AQ3V6T2 AC091965.5-201ENST00000624785 342 ntBASIC1.28□□□□□ -2.2
CCDC88AQ3V6T2 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC1.28□□□□□ -2.2
CCDC88AQ3V6T2 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC1.28□□□□□ -2.21
CCDC88AQ3V6T2 DNAJA1P2-201ENST00000421360 1197 ntBASIC1.27□□□□□ -2.21
CCDC88AQ3V6T2 GS1-594A7.3-201ENST00000421585 574 ntTSL 2 BASIC1.27□□□□□ -2.21
CCDC88AQ3V6T2 ISCA1P1-201ENST00000426679 387 ntBASIC1.27□□□□□ -2.21
CCDC88AQ3V6T2 RPL30P4-201ENST00000429309 333 ntBASIC1.27□□□□□ -2.21
CCDC88AQ3V6T2 RPS29P28-201ENST00000446439 141 ntBASIC1.27□□□□□ -2.21
CCDC88AQ3V6T2 SEPT14P24-201ENST00000447236 180 ntBASIC1.27□□□□□ -2.21
CCDC88AQ3V6T2 MTND2P24-201ENST00000453434 806 ntBASIC1.27□□□□□ -2.21
CCDC88AQ3V6T2 AL441985.1-201ENST00000457727 251 ntBASIC1.27□□□□□ -2.21
CCDC88AQ3V6T2 RPL7P43-201ENST00000478876 753 ntBASIC1.27□□□□□ -2.21
CCDC88AQ3V6T2 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC1.27□□□□□ -2.21
CCDC88AQ3V6T2 AC008628.1-201ENST00000508663 265 ntBASIC1.27□□□□□ -2.21
CCDC88AQ3V6T2 AC011131.1-201ENST00000521224 252 ntTSL 2 BASIC1.27□□□□□ -2.21
CCDC88AQ3V6T2 AC022861.1-201ENST00000522981 663 ntBASIC1.27□□□□□ -2.21
CCDC88AQ3V6T2 AC104248.1-202ENST00000524134 486 ntTSL 5 BASIC1.27□□□□□ -2.21
CCDC88AQ3V6T2 MIR3126-201ENST00000577443 74 ntBASIC1.27□□□□□ -2.21
CCDC88AQ3V6T2 AC005261.5-201ENST00000596280 355 ntBASIC1.27□□□□□ -2.21
CCDC88AQ3V6T2 BNIP3P23-201ENST00000599655 511 ntBASIC1.27□□□□□ -2.21
CCDC88AQ3V6T2 DLG2-AS1_1.1-201ENST00000622319 213 ntBASIC1.27□□□□□ -2.21
CCDC88AQ3V6T2 AC092447.10-201ENST00000620607 1652 ntBASIC1.27□□□□□ -2.21
CCDC88AQ3V6T2 OR13C4-201ENST00000277216 957 ntAPPRIS P1 BASIC1.26□□□□□ -2.21
CCDC88AQ3V6T2 MIR1302-8-201ENST00000408342 128 ntBASIC1.26□□□□□ -2.21
CCDC88AQ3V6T2 CYCSP48-201ENST00000417124 323 ntBASIC1.26□□□□□ -2.21
CCDC88AQ3V6T2 AC005534.2-201ENST00000431047 433 ntBASIC1.26□□□□□ -2.21
CCDC88AQ3V6T2 ZNF736P11Y-201ENST00000442535 1213 ntBASIC1.26□□□□□ -2.21
CCDC88AQ3V6T2 AC018693.1-201ENST00000442829 550 ntTSL 4 BASIC1.26□□□□□ -2.21
CCDC88AQ3V6T2 BRK1P2-201ENST00000442875 223 ntBASIC1.26□□□□□ -2.21
CCDC88AQ3V6T2 MTND1P31-201ENST00000449206 961 ntBASIC1.26□□□□□ -2.21
CCDC88AQ3V6T2 OFD1P7Y-201ENST00000454643 1155 ntBASIC1.26□□□□□ -2.21
CCDC88AQ3V6T2 AC013267.1-201ENST00000458227 267 ntBASIC1.26□□□□□ -2.21
CCDC88AQ3V6T2 AC098591.2-201ENST00000510152 315 ntBASIC1.26□□□□□ -2.21
CCDC88AQ3V6T2 LINC02144-201ENST00000511417 592 ntTSL 4 BASIC1.26□□□□□ -2.21
CCDC88AQ3V6T2 AC090796.1-201ENST00000520370 567 ntTSL 4 BASIC1.26□□□□□ -2.21
CCDC88AQ3V6T2 AP003781.1-201ENST00000543403 404 ntTSL 3 BASIC1.26□□□□□ -2.21
CCDC88AQ3V6T2 CYCSP2-201ENST00000558168 301 ntBASIC1.26□□□□□ -2.21
CCDC88AQ3V6T2 AC005951.2-201ENST00000576282 495 ntBASIC1.26□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 113.8 ms