Protein–RNA interactions for Protein: Q00056

HOXA4, Homeobox protein Hox-A4, humanhuman

Predicted RBP Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4Q00056 MIR521-1-201ENST00000384902 87 ntBASIC3.15□□□□□ -1.91
HOXA4Q00056 MIR34A-201ENST00000385130 110 ntBASIC3.15□□□□□ -1.91
HOXA4Q00056 MIR548F4-201ENST00000408515 105 ntBASIC3.15□□□□□ -1.91
HOXA4Q00056 SNORA3.3-201ENST00000408712 125 ntBASIC3.15□□□□□ -1.91
HOXA4Q00056 RNU2-23P-201ENST00000410545 195 ntBASIC3.15□□□□□ -1.91
HOXA4Q00056 AC118345.1-201ENST00000411785 366 ntTSL 3 BASIC3.15□□□□□ -1.91
HOXA4Q00056 AL591419.1-201ENST00000427423 339 ntBASIC3.15□□□□□ -1.91
HOXA4Q00056 TOMM20P4-201ENST00000427861 435 ntBASIC3.15□□□□□ -1.91
HOXA4Q00056 RPS15AP10-201ENST00000432472 382 ntBASIC3.15□□□□□ -1.91
HOXA4Q00056 GOT2P5-201ENST00000433995 546 ntBASIC3.15□□□□□ -1.91
HOXA4Q00056 HIGD1AP2-201ENST00000446367 280 ntBASIC3.15□□□□□ -1.91
HOXA4Q00056 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC3.15□□□□□ -1.91
HOXA4Q00056 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC3.15□□□□□ -1.91
HOXA4Q00056 AC133134.1-201ENST00000466800 359 ntBASIC3.15□□□□□ -1.91
HOXA4Q00056 AC128713.1-201ENST00000471495 306 ntBASIC3.15□□□□□ -1.91
HOXA4Q00056 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC3.15□□□□□ -1.91
HOXA4Q00056 RPL30P5-201ENST00000494923 336 ntBASIC3.15□□□□□ -1.91
HOXA4Q00056 AC015911.1-201ENST00000495111 156 ntBASIC3.15□□□□□ -1.91
HOXA4Q00056 AC114741.1-201ENST00000504357 464 ntTSL 2 BASIC3.15□□□□□ -1.91
HOXA4Q00056 VWA8P1-201ENST00000510889 176 ntBASIC3.15□□□□□ -1.91
HOXA4Q00056 RNA5SP468-201ENST00000516782 93 ntBASIC3.15□□□□□ -1.91
HOXA4Q00056 RNU6-703P-201ENST00000516946 107 ntBASIC3.15□□□□□ -1.91
HOXA4Q00056 AC013762.1-201ENST00000531136 467 ntTSL 3 BASIC3.15□□□□□ -1.91
HOXA4Q00056 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
HOXA4Q00056 CYCSP30-201ENST00000546447 172 ntBASIC3.15□□□□□ -1.91
HOXA4Q00056 IGKV2OR2-8-201ENST00000558710 300 ntBASIC3.15□□□□□ -1.91
HOXA4Q00056 CYCSP39-201ENST00000565821 309 ntBASIC3.15□□□□□ -1.91
HOXA4Q00056 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC3.15□□□□□ -1.91
HOXA4Q00056 ZNF562-205ENST00000587392 583 ntTSL 2 BASIC3.15□□□□□ -1.91
HOXA4Q00056 AL158827.2-201ENST00000602494 330 ntBASIC3.15□□□□□ -1.91
HOXA4Q00056 AP000787.2-201ENST00000604432 568 ntBASIC3.15□□□□□ -1.91
HOXA4Q00056 AC018889.1-201ENST00000605372 397 ntBASIC3.15□□□□□ -1.91
HOXA4Q00056 FTX_3.1-201ENST00000610451 147 ntBASIC3.15□□□□□ -1.91
HOXA4Q00056 AC039056.2-201ENST00000622261 511 ntBASIC3.15□□□□□ -1.91
HOXA4Q00056 AL691447.3-201ENST00000635020 330 ntBASIC3.15□□□□□ -1.91
HOXA4Q00056 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC3.15□□□□□ -1.91
HOXA4Q00056 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
HOXA4Q00056 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
HOXA4Q00056 CLIC2-202ENST00000369449 2655 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
HOXA4Q00056 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
HOXA4Q00056 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC3.14□□□□□ -1.91
HOXA4Q00056 SLC2A2-201ENST00000314251 3210 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
HOXA4Q00056 DOCK7-218ENST00000635123 6297 ntAPPRIS ALT2 TSL 5 BASIC3.14□□□□□ -1.91
HOXA4Q00056 CPXCR1-202ENST00000373111 1577 ntAPPRIS P1 TSL 2 BASIC3.14□□□□□ -1.91
HOXA4Q00056 PNPLA8-204ENST00000426128 4268 ntTSL 5 BASIC3.14□□□□□ -1.91
HOXA4Q00056 Y_RNA.314-201ENST00000365114 102 ntBASIC3.14□□□□□ -1.91
HOXA4Q00056 Z98749.2-208ENST00000381646 500 ntBASIC3.14□□□□□ -1.91
HOXA4Q00056 RNU6-196P-201ENST00000384315 107 ntBASIC3.14□□□□□ -1.91
HOXA4Q00056 Y_RNA.533-201ENST00000384596 114 ntBASIC3.14□□□□□ -1.91
HOXA4Q00056 CRYBB2P1-203ENST00000415709 538 ntBASIC3.14□□□□□ -1.91
HOXA4Q00056 NUP35P1-201ENST00000422734 947 ntBASIC3.14□□□□□ -1.91
HOXA4Q00056 AC096644.2-201ENST00000429278 159 ntBASIC3.14□□□□□ -1.91
HOXA4Q00056 SNRPEP4-201ENST00000435815 279 ntBASIC3.14□□□□□ -1.91
HOXA4Q00056 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC3.14□□□□□ -1.91
HOXA4Q00056 CHEK2P4-201ENST00000450340 246 ntBASIC3.14□□□□□ -1.91
HOXA4Q00056 AL353752.1-201ENST00000454946 260 ntBASIC3.14□□□□□ -1.91
HOXA4Q00056 AC092994.1-201ENST00000498604 279 ntTSL 3 BASIC3.14□□□□□ -1.91
HOXA4Q00056 AK3P2-201ENST00000507976 429 ntBASIC3.14□□□□□ -1.91
HOXA4Q00056 AC116655.1-201ENST00000508324 901 ntBASIC3.14□□□□□ -1.91
HOXA4Q00056 RNU2-58P-201ENST00000516403 183 ntBASIC3.14□□□□□ -1.91
HOXA4Q00056 SNORA70.18-201ENST00000516696 98 ntBASIC3.14□□□□□ -1.91
HOXA4Q00056 RNU6-1282P-201ENST00000516735 96 ntBASIC3.14□□□□□ -1.91
HOXA4Q00056 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC3.14□□□□□ -1.91
HOXA4Q00056 AP000777.1-201ENST00000541495 355 ntTSL 3 BASIC3.14□□□□□ -1.91
HOXA4Q00056 AC107016.1-201ENST00000550463 337 ntBASIC3.14□□□□□ -1.91
HOXA4Q00056 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC3.14□□□□□ -1.91
HOXA4Q00056 AC020914.4-201ENST00000597690 277 ntBASIC3.14□□□□□ -1.91
HOXA4Q00056 AC004825.2-201ENST00000616634 455 ntBASIC3.14□□□□□ -1.91
HOXA4Q00056 AC010205.1-201ENST00000616668 449 ntBASIC3.14□□□□□ -1.91
HOXA4Q00056 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC3.14□□□□□ -1.91
HOXA4Q00056 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC3.14□□□□□ -1.91
HOXA4Q00056 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC3.14□□□□□ -1.91
HOXA4Q00056 AL133412.1-201ENST00000380194 2992 ntBASIC3.14□□□□□ -1.91
HOXA4Q00056 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC3.13□□□□□ -1.91
HOXA4Q00056 ZNF682-207ENST00000595736 1710 ntTSL 2 BASIC3.13□□□□□ -1.91
HOXA4Q00056 ZNF72P-201ENST00000425869 1908 ntBASIC3.13□□□□□ -1.91
HOXA4Q00056 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC3.13□□□□□ -1.91
HOXA4Q00056 AC118273.1-201ENST00000525324 3006 ntBASIC3.13□□□□□ -1.91
HOXA4Q00056 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC3.13□□□□□ -1.91
HOXA4Q00056 RNY1P16-201ENST00000363063 111 ntBASIC3.13□□□□□ -1.91
HOXA4Q00056 Y_RNA.153-201ENST00000363615 91 ntBASIC3.13□□□□□ -1.91
HOXA4Q00056 RNY3P11-201ENST00000364153 102 ntBASIC3.13□□□□□ -1.91
HOXA4Q00056 RNU6-450P-201ENST00000364654 107 ntBASIC3.13□□□□□ -1.91
HOXA4Q00056 RNA5SP51-201ENST00000364750 119 ntBASIC3.13□□□□□ -1.91
HOXA4Q00056 SNORA73.2-201ENST00000364946 201 ntBASIC3.13□□□□□ -1.91
HOXA4Q00056 C1orf100-202ENST00000366537 483 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
HOXA4Q00056 RGS4-201ENST00000367906 930 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
HOXA4Q00056 RNU6-217P-201ENST00000384164 104 ntBASIC3.13□□□□□ -1.91
HOXA4Q00056 Y_RNA.455-201ENST00000384230 98 ntBASIC3.13□□□□□ -1.91
HOXA4Q00056 RNU6-1156P-201ENST00000410365 100 ntBASIC3.13□□□□□ -1.91
HOXA4Q00056 RNA5SP31-201ENST00000411144 127 ntBASIC3.13□□□□□ -1.91
HOXA4Q00056 DBIP2-201ENST00000419076 262 ntBASIC3.13□□□□□ -1.91
HOXA4Q00056 TRAPPC2P4-201ENST00000421750 331 ntBASIC3.13□□□□□ -1.91
HOXA4Q00056 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC3.13□□□□□ -1.91
HOXA4Q00056 HMGB1P12-201ENST00000438594 598 ntBASIC3.13□□□□□ -1.91
HOXA4Q00056 AC099799.1-201ENST00000439809 192 ntBASIC3.13□□□□□ -1.91
HOXA4Q00056 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC3.13□□□□□ -1.91
HOXA4Q00056 AC013470.1-201ENST00000453438 462 ntBASIC3.13□□□□□ -1.91
HOXA4Q00056 NDUFAF4P3-201ENST00000456468 525 ntBASIC3.13□□□□□ -1.91
HOXA4Q00056 U8.20-201ENST00000459445 131 ntBASIC3.13□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 96.3 ms