Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC0.19□□□□□ -2.38
HSPG2P98160 CARD18-203ENST00000532895 422 ntTSL 2 BASIC0.19□□□□□ -2.38
HSPG2P98160 POLR2KP1-201ENST00000553226 168 ntBASIC0.19□□□□□ -2.38
HSPG2P98160 AC069294.1-201ENST00000608397 350 ntBASIC0.19□□□□□ -2.38
HSPG2P98160 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC0.19□□□□□ -2.38
HSPG2P98160 UBE2Q2P1-202ENST00000354771 883 ntBASIC0.18□□□□□ -2.38
HSPG2P98160 TAF9BP2-201ENST00000400856 499 ntBASIC0.18□□□□□ -2.38
HSPG2P98160 PIGPP2-201ENST00000411569 458 ntBASIC0.18□□□□□ -2.38
HSPG2P98160 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC0.18□□□□□ -2.38
HSPG2P98160 RNU6-322P-201ENST00000516010 103 ntBASIC0.18□□□□□ -2.38
HSPG2P98160 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC0.18□□□□□ -2.38
HSPG2P98160 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC0.18□□□□□ -2.38
HSPG2P98160 RPS15AP38-201ENST00000413110 372 ntBASIC0.18□□□□□ -2.38
HSPG2P98160 PIGFP2-201ENST00000421400 651 ntBASIC0.18□□□□□ -2.38
HSPG2P98160 ZNF736P11Y-201ENST00000442535 1213 ntBASIC0.18□□□□□ -2.38
HSPG2P98160 Y_RNA.644-201ENST00000459006 113 ntBASIC0.18□□□□□ -2.38
HSPG2P98160 AC004884.2-201ENST00000476569 546 ntTSL 4 BASIC0.18□□□□□ -2.38
HSPG2P98160 AC147055.4-201ENST00000504399 745 ntBASIC0.18□□□□□ -2.38
HSPG2P98160 AL353699.1-201ENST00000529078 365 ntTSL 3 BASIC0.18□□□□□ -2.38
HSPG2P98160 AC004923.2-201ENST00000529649 369 ntBASIC0.18□□□□□ -2.38
HSPG2P98160 ITFG1-AS1-202ENST00000565694 494 ntTSL 2 BASIC0.18□□□□□ -2.38
HSPG2P98160 AC005668.1-201ENST00000571142 476 ntBASIC0.18□□□□□ -2.38
HSPG2P98160 AC055876.5-201ENST00000605667 259 ntBASIC0.18□□□□□ -2.38
HSPG2P98160 AL133370.2-201ENST00000619934 439 ntBASIC0.18□□□□□ -2.38
HSPG2P98160 Y_RNA.25-201ENST00000362528 102 ntBASIC0.18□□□□□ -2.38
HSPG2P98160 RNA5SP125-201ENST00000364843 120 ntBASIC0.18□□□□□ -2.38
HSPG2P98160 RNU6-1083P-201ENST00000384022 107 ntBASIC0.18□□□□□ -2.38
HSPG2P98160 Y_RNA.552-201ENST00000384665 112 ntBASIC0.18□□□□□ -2.38
HSPG2P98160 MIR561-201ENST00000385216 97 ntBASIC0.18□□□□□ -2.38
HSPG2P98160 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC0.18□□□□□ -2.38
HSPG2P98160 LINC00189-202ENST00000431661 308 ntTSL 5 BASIC0.18□□□□□ -2.38
HSPG2P98160 RPS29P8-201ENST00000445109 171 ntBASIC0.18□□□□□ -2.38
HSPG2P98160 HMGB1P35-201ENST00000503360 598 ntBASIC0.18□□□□□ -2.38
HSPG2P98160 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC0.18□□□□□ -2.38
HSPG2P98160 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC0.18□□□□□ -2.38
HSPG2P98160 NAP1L1P1-201ENST00000524793 1063 ntBASIC0.18□□□□□ -2.38
HSPG2P98160 AC087481.2-201ENST00000565492 330 ntBASIC0.18□□□□□ -2.38
HSPG2P98160 AC106800.4-201ENST00000614905 153 ntBASIC0.18□□□□□ -2.38
HSPG2P98160 AC099654.5-201ENST00000636479 350 ntBASIC0.18□□□□□ -2.38
HSPG2P98160 RNA5SP361-201ENST00000362686 118 ntBASIC0.17□□□□□ -2.38
HSPG2P98160 SNORD118-201ENST00000363593 134 ntBASIC0.17□□□□□ -2.38
HSPG2P98160 U3.8-201ENST00000363675 217 ntBASIC0.17□□□□□ -2.38
HSPG2P98160 Y_RNA.493-201ENST00000384422 102 ntBASIC0.17□□□□□ -2.38
HSPG2P98160 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC0.17□□□□□ -2.38
HSPG2P98160 NDUFB4P7-201ENST00000423198 363 ntBASIC0.17□□□□□ -2.38
HSPG2P98160 AL390961.1-201ENST00000446557 319 ntTSL 2 BASIC0.17□□□□□ -2.38
HSPG2P98160 TRBVA-201ENST00000498804 316 ntBASIC0.17□□□□□ -2.38
HSPG2P98160 AC138853.1-201ENST00000503549 823 ntBASIC0.17□□□□□ -2.38
HSPG2P98160 AC016687.2-203ENST00000506650 578 ntTSL 3 BASIC0.17□□□□□ -2.38
HSPG2P98160 AC103853.2-201ENST00000519805 716 ntTSL 3 BASIC0.17□□□□□ -2.38
HSPG2P98160 MTCYBP27-201ENST00000555160 670 ntBASIC0.17□□□□□ -2.38
HSPG2P98160 AL138963.2-201ENST00000605137 226 ntBASIC0.17□□□□□ -2.38
HSPG2P98160 AC007349.4-201ENST00000608114 532 ntBASIC0.17□□□□□ -2.38
HSPG2P98160 AC084824.5-201ENST00000612009 413 ntBASIC0.17□□□□□ -2.38
HSPG2P98160 AC022447.1-201ENST00000515358 464 ntBASIC0.17□□□□□ -2.38
HSPG2P98160 RNU6-1095P-201ENST00000516148 108 ntBASIC0.17□□□□□ -2.38
HSPG2P98160 LSM6P2-201ENST00000552208 177 ntBASIC0.17□□□□□ -2.38
HSPG2P98160 AC091489.2-201ENST00000566263 604 ntBASIC0.17□□□□□ -2.38
HSPG2P98160 MIR4667-201ENST00000578933 66 ntBASIC0.17□□□□□ -2.38
HSPG2P98160 AC008498.1-201ENST00000613012 531 ntBASIC0.17□□□□□ -2.38
HSPG2P98160 Y_RNA.804-201ENST00000615262 101 ntBASIC0.17□□□□□ -2.38
HSPG2P98160 DLEU1_2.1-201ENST00000617920 342 ntBASIC0.17□□□□□ -2.38
HSPG2P98160 AC009509.4-201ENST00000619202 509 ntBASIC0.17□□□□□ -2.38
HSPG2P98160 AC087821.2-201ENST00000637086 450 ntBASIC0.17□□□□□ -2.38
HSPG2P98160 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC0.17□□□□□ -2.38
HSPG2P98160 RNA5SP56-201ENST00000410277 118 ntBASIC0.17□□□□□ -2.38
HSPG2P98160 VPS26BP1-201ENST00000417155 755 ntBASIC0.17□□□□□ -2.38
HSPG2P98160 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC0.17□□□□□ -2.38
HSPG2P98160 BEND7P1-201ENST00000422058 457 ntBASIC0.17□□□□□ -2.38
HSPG2P98160 AL606490.4-201ENST00000423117 127 ntBASIC0.17□□□□□ -2.38
HSPG2P98160 MYCBP2-AS2-201ENST00000428716 428 ntTSL 5 BASIC0.17□□□□□ -2.38
HSPG2P98160 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC0.17□□□□□ -2.38
HSPG2P98160 LINC01802-201ENST00000438824 523 ntTSL 3 BASIC0.17□□□□□ -2.38
HSPG2P98160 AC092802.2-202ENST00000444665 371 ntTSL 5 BASIC0.17□□□□□ -2.38
HSPG2P98160 AC011998.3-201ENST00000457053 254 ntTSL 3 BASIC0.17□□□□□ -2.38
HSPG2P98160 PSMC1P5-201ENST00000512850 177 ntBASIC0.17□□□□□ -2.38
HSPG2P98160 ANKRD36BP2-206ENST00000575193 1245 ntBASIC0.17□□□□□ -2.38
HSPG2P98160 AC017083.3-201ENST00000609955 700 ntBASIC0.17□□□□□ -2.38
HSPG2P98160 AC022202.1-201ENST00000613515 211 ntBASIC0.17□□□□□ -2.38
HSPG2P98160 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC0.17□□□□□ -2.38
HSPG2P98160 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC0.17□□□□□ -2.38
HSPG2P98160 RNU4-23P-201ENST00000362839 140 ntBASIC0.17□□□□□ -2.38
HSPG2P98160 SNORD49B-201ENST00000365172 72 ntBASIC0.17□□□□□ -2.38
HSPG2P98160 SEC61A2-203ENST00000379017 600 ntTSL 5 BASIC0.17□□□□□ -2.38
HSPG2P98160 SNORA40.19-201ENST00000390846 128 ntBASIC0.17□□□□□ -2.38
HSPG2P98160 RN7SKP142-201ENST00000411236 328 ntBASIC0.17□□□□□ -2.38
HSPG2P98160 EDNRB-AS1-201ENST00000422405 601 ntTSL 5 BASIC0.17□□□□□ -2.38
HSPG2P98160 LINC01473-202ENST00000427108 695 ntTSL 5 BASIC0.17□□□□□ -2.38
HSPG2P98160 NDUFA5P10-201ENST00000432147 357 ntBASIC0.17□□□□□ -2.38
HSPG2P98160 RPL37P21-201ENST00000435890 276 ntBASIC0.17□□□□□ -2.38
HSPG2P98160 Z82210.1-201ENST00000440037 231 ntBASIC0.17□□□□□ -2.38
HSPG2P98160 MTCYBP3-201ENST00000445588 1137 ntBASIC0.17□□□□□ -2.38
HSPG2P98160 DDX3P2-201ENST00000446138 111 ntBASIC0.17□□□□□ -2.38
HSPG2P98160 AL359915.2-203ENST00000457043 540 ntTSL 3 BASIC0.17□□□□□ -2.38
HSPG2P98160 AC114982.1-201ENST00000469402 321 ntBASIC0.17□□□□□ -2.38
HSPG2P98160 AC092691.3-201ENST00000482766 510 ntTSL 3 BASIC0.17□□□□□ -2.38
HSPG2P98160 MRPS36P2-201ENST00000512569 299 ntBASIC0.17□□□□□ -2.38
HSPG2P98160 RNA5SP404-201ENST00000517118 132 ntBASIC0.17□□□□□ -2.38
HSPG2P98160 AL589743.7-201ENST00000612637 233 ntBASIC0.17□□□□□ -2.38
HSPG2P98160 U1.36-201ENST00000620684 176 ntBASIC0.17□□□□□ -2.38
Retrieved 100 of 98,524 protein–RNA pairs in 119.4 ms