Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 RAPGEF6-201ENST00000296859 5618 ntAPPRIS ALT2 TSL 1 (best) BASIC4.04□□□□□ -1.76
RNF4P78317 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
RNF4P78317 HSPA8P1-201ENST00000425843 1833 ntBASIC4.04□□□□□ -1.76
RNF4P78317 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC4.04□□□□□ -1.76
RNF4P78317 AKAP11-201ENST00000025301 9920 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
RNF4P78317 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
RNF4P78317 NR5A2-201ENST00000236914 3115 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
RNF4P78317 PTPN22-201ENST00000359785 3654 ntAPPRIS P2 TSL 1 (best) BASIC4.03□□□□□ -1.76
RNF4P78317 SLCO1B1-201ENST00000256958 2229 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
RNF4P78317 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC4.03□□□□□ -1.76
RNF4P78317 NR3C1-206ENST00000424646 4591 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
RNF4P78317 Y_RNA.16-201ENST00000362421 102 ntBASIC4.03□□□□□ -1.76
RNF4P78317 Y_RNA.20-201ENST00000362479 113 ntBASIC4.03□□□□□ -1.76
RNF4P78317 Y_RNA.54-201ENST00000362766 105 ntBASIC4.03□□□□□ -1.76
RNF4P78317 RNA5SP175-201ENST00000364275 119 ntBASIC4.03□□□□□ -1.76
RNF4P78317 RNU4-9P-201ENST00000364951 139 ntBASIC4.03□□□□□ -1.76
RNF4P78317 SPRR2D-203ENST00000368757 800 ntAPPRIS P1 TSL 3 BASIC4.03□□□□□ -1.76
RNF4P78317 RNU6-338P-201ENST00000383888 105 ntBASIC4.03□□□□□ -1.76
RNF4P78317 RNU6-217P-201ENST00000384164 104 ntBASIC4.03□□□□□ -1.76
RNF4P78317 Y_RNA.539-201ENST00000384635 107 ntBASIC4.03□□□□□ -1.76
RNF4P78317 AC239803.1-203ENST00000411978 452 ntTSL 2 BASIC4.03□□□□□ -1.76
RNF4P78317 AL590135.1-201ENST00000422215 156 ntBASIC4.03□□□□□ -1.76
RNF4P78317 BX679664.1-201ENST00000434429 253 ntBASIC4.03□□□□□ -1.76
RNF4P78317 RPL23AP52-201ENST00000439311 478 ntBASIC4.03□□□□□ -1.76
RNF4P78317 TPT1P12-201ENST00000448968 492 ntBASIC4.03□□□□□ -1.76
RNF4P78317 AC109327.1-201ENST00000471666 403 ntBASIC4.03□□□□□ -1.76
RNF4P78317 AL592156.1-201ENST00000508758 304 ntBASIC4.03□□□□□ -1.76
RNF4P78317 AC091874.1-201ENST00000511402 339 ntBASIC4.03□□□□□ -1.76
RNF4P78317 AC092440.1-201ENST00000512563 571 ntTSL 4 BASIC4.03□□□□□ -1.76
RNF4P78317 AC016598.2-201ENST00000514942 525 ntTSL 5 BASIC4.03□□□□□ -1.76
RNF4P78317 RNA5SP154-201ENST00000516193 111 ntBASIC4.03□□□□□ -1.76
RNF4P78317 RN7SKP289-201ENST00000517244 295 ntBASIC4.03□□□□□ -1.76
RNF4P78317 TRAV8-5-201ENST00000537369 341 ntBASIC4.03□□□□□ -1.76
RNF4P78317 LINC00933-203ENST00000559812 219 ntBASIC4.03□□□□□ -1.76
RNF4P78317 ZNF192P1-203ENST00000565888 810 ntBASIC4.03□□□□□ -1.76
RNF4P78317 AC013565.1-201ENST00000565938 597 ntTSL 2 BASIC4.03□□□□□ -1.76
RNF4P78317 AC023824.2-201ENST00000566185 400 ntBASIC4.03□□□□□ -1.76
RNF4P78317 AC090617.3-201ENST00000573670 475 ntBASIC4.03□□□□□ -1.76
RNF4P78317 MIR4644-201ENST00000579929 84 ntBASIC4.03□□□□□ -1.76
RNF4P78317 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC4.03□□□□□ -1.76
RNF4P78317 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC4.03□□□□□ -1.76
RNF4P78317 U2.21-201ENST00000637295 81 ntBASIC4.03□□□□□ -1.76
RNF4P78317 ZPLD1-202ENST00000466937 1531 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
RNF4P78317 FEZ2-201ENST00000305852 1782 ntTSL 5 BASIC4.03□□□□□ -1.76
RNF4P78317 USP26-201ENST00000370832 3642 ntAPPRIS P1 BASIC4.03□□□□□ -1.76
RNF4P78317 ZFHX4-207ENST00000521891 14019 ntAPPRIS P2 TSL 5 BASIC4.03□□□□□ -1.76
RNF4P78317 EIF2S1-202ENST00000466499 2390 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
RNF4P78317 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC4.03□□□□□ -1.76
RNF4P78317 AGBL2-201ENST00000357610 3295 ntAPPRIS ALT2 TSL 5 BASIC4.03□□□□□ -1.77
RNF4P78317 AC118273.1-201ENST00000525324 3006 ntBASIC4.03□□□□□ -1.77
RNF4P78317 SLC17A3-204ENST00000397060 2052 ntAPPRIS P1 TSL 2 BASIC4.02□□□□□ -1.77
RNF4P78317 LINC02471-203ENST00000641941 4752 ntBASIC4.02□□□□□ -1.77
RNF4P78317 ZNF345-214ENST00000612719 2938 ntAPPRIS P1 TSL 4 BASIC4.02□□□□□ -1.77
RNF4P78317 RNU6-942P-201ENST00000363002 107 ntBASIC4.02□□□□□ -1.77
RNF4P78317 RNU6-778P-201ENST00000363269 103 ntBASIC4.02□□□□□ -1.77
RNF4P78317 RNU6-200P-201ENST00000364743 107 ntBASIC4.02□□□□□ -1.77
RNF4P78317 SNORD115-46-201ENST00000390982 71 ntBASIC4.02□□□□□ -1.77
RNF4P78317 AL079342.1-201ENST00000401460 267 ntBASIC4.02□□□□□ -1.77
RNF4P78317 HMGN2P30-201ENST00000423237 256 ntBASIC4.02□□□□□ -1.77
RNF4P78317 AC098831.1-201ENST00000440661 216 ntBASIC4.02□□□□□ -1.77
RNF4P78317 RPL31P13-201ENST00000484151 370 ntBASIC4.02□□□□□ -1.77
RNF4P78317 RPL30P1-201ENST00000488676 339 ntBASIC4.02□□□□□ -1.77
RNF4P78317 RPL23AP75-201ENST00000491601 451 ntBASIC4.02□□□□□ -1.77
RNF4P78317 AC092747.1-201ENST00000538920 351 ntTSL 5 BASIC4.02□□□□□ -1.77
RNF4P78317 RPL21P7-201ENST00000557463 483 ntBASIC4.02□□□□□ -1.77
RNF4P78317 AC026992.1-202ENST00000558454 421 ntTSL 3 BASIC4.02□□□□□ -1.77
RNF4P78317 AC092120.1-201ENST00000562211 420 ntTSL 3 BASIC4.02□□□□□ -1.77
RNF4P78317 AC110741.2-201ENST00000605278 268 ntBASIC4.02□□□□□ -1.77
RNF4P78317 MIR6810-201ENST00000622701 70 ntBASIC4.02□□□□□ -1.77
RNF4P78317 SCARNA4-201ENST00000629045 128 ntBASIC4.02□□□□□ -1.77
RNF4P78317 SLC10A2-201ENST00000245312 3779 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
RNF4P78317 DNAH12-202ENST00000351747 9542 ntTSL 5 BASIC4.02□□□□□ -1.77
RNF4P78317 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC4.02□□□□□ -1.77
RNF4P78317 SOS1-203ENST00000426016 8517 ntAPPRIS P2 TSL 2 BASIC4.02□□□□□ -1.77
RNF4P78317 KLRD1-204ENST00000381908 15549 ntAPPRIS P4 TSL 1 (best) BASIC4.02□□□□□ -1.77
RNF4P78317 CCDC91-201ENST00000381259 2334 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
RNF4P78317 RAP2C-AS1-202ENST00000441399 3473 ntTSL 2 BASIC4.01□□□□□ -1.77
RNF4P78317 ABCA8-215ENST00000615593 3264 ntTSL 5 BASIC4.01□□□□□ -1.77
RNF4P78317 MS4A14-201ENST00000300187 2997 ntAPPRIS P3 TSL 1 (best) BASIC4.01□□□□□ -1.77
RNF4P78317 OSBPL6-201ENST00000190611 10513 ntAPPRIS P3 TSL 1 (best) BASIC4.01□□□□□ -1.77
RNF4P78317 CDK14-201ENST00000265741 4953 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
RNF4P78317 ZNF534-204ENST00000433050 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC4.01□□□□□ -1.77
RNF4P78317 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
RNF4P78317 RNU1-108P-201ENST00000362556 161 ntBASIC4.01□□□□□ -1.77
RNF4P78317 RNU6-884P-201ENST00000363889 107 ntBASIC4.01□□□□□ -1.77
RNF4P78317 RNU1-132P-201ENST00000364300 164 ntBASIC4.01□□□□□ -1.77
RNF4P78317 RNU1-140P-201ENST00000365040 165 ntBASIC4.01□□□□□ -1.77
RNF4P78317 RNA5SP22-201ENST00000365393 109 ntBASIC4.01□□□□□ -1.77
RNF4P78317 RNA5SP366-201ENST00000365454 123 ntBASIC4.01□□□□□ -1.77
RNF4P78317 RNU1-73P-201ENST00000383971 164 ntBASIC4.01□□□□□ -1.77
RNF4P78317 SNORD116-20-201ENST00000384529 92 ntBASIC4.01□□□□□ -1.77
RNF4P78317 PPIAP31-201ENST00000405422 495 ntBASIC4.01□□□□□ -1.77
RNF4P78317 RNA5SP129-201ENST00000410276 118 ntBASIC4.01□□□□□ -1.77
RNF4P78317 Y_RNA.602-201ENST00000410535 92 ntBASIC4.01□□□□□ -1.77
RNF4P78317 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC4.01□□□□□ -1.77
RNF4P78317 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC4.01□□□□□ -1.77
RNF4P78317 AC004383.1-201ENST00000438135 289 ntBASIC4.01□□□□□ -1.77
RNF4P78317 AC243964.1-201ENST00000441814 261 ntBASIC4.01□□□□□ -1.77
RNF4P78317 AL031659.1-201ENST00000447075 539 ntBASIC4.01□□□□□ -1.77
RNF4P78317 GZMAP1-201ENST00000503054 631 ntBASIC4.01□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 98.9 ms