Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 RNU6-908P-201ENST00000410160 94 ntBASIC2.21□□□□□ -2.06
COL4A4P53420 AL136133.1-201ENST00000413694 376 ntBASIC2.21□□□□□ -2.06
COL4A4P53420 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC2.21□□□□□ -2.06
COL4A4P53420 AC108059.2-201ENST00000434626 151 ntBASIC2.21□□□□□ -2.06
COL4A4P53420 AC236972.2-201ENST00000434979 310 ntBASIC2.21□□□□□ -2.06
COL4A4P53420 NDUFB4P6-201ENST00000436819 366 ntBASIC2.21□□□□□ -2.06
COL4A4P53420 AC009238.1-201ENST00000442165 424 ntBASIC2.21□□□□□ -2.06
COL4A4P53420 AL133260.2-201ENST00000445833 396 ntTSL 3 BASIC2.21□□□□□ -2.06
COL4A4P53420 AC009237.6-201ENST00000446969 424 ntBASIC2.21□□□□□ -2.06
COL4A4P53420 NDUFS5P3-201ENST00000450668 321 ntBASIC2.21□□□□□ -2.06
COL4A4P53420 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC2.21□□□□□ -2.06
COL4A4P53420 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC2.21□□□□□ -2.06
COL4A4P53420 RNA5SP401-201ENST00000515920 127 ntBASIC2.21□□□□□ -2.06
COL4A4P53420 RNU6-1281P-201ENST00000516223 105 ntBASIC2.21□□□□□ -2.06
COL4A4P53420 AC023050.3-201ENST00000541142 333 ntBASIC2.21□□□□□ -2.06
COL4A4P53420 AP003781.1-201ENST00000543403 404 ntTSL 3 BASIC2.21□□□□□ -2.06
COL4A4P53420 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC2.21□□□□□ -2.06
COL4A4P53420 AC106745.1-201ENST00000566798 464 ntTSL 2 BASIC2.21□□□□□ -2.06
COL4A4P53420 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC2.21□□□□□ -2.06
COL4A4P53420 AC069061.2-202ENST00000580280 357 ntTSL 3 BASIC2.21□□□□□ -2.06
COL4A4P53420 AL133255.1-201ENST00000606374 441 ntBASIC2.21□□□□□ -2.06
COL4A4P53420 AL133215.3-201ENST00000609801 448 ntBASIC2.21□□□□□ -2.06
COL4A4P53420 AC105429.2-201ENST00000610567 517 ntBASIC2.21□□□□□ -2.06
COL4A4P53420 DISC2.1-201ENST00000612827 205 ntBASIC2.21□□□□□ -2.06
COL4A4P53420 AC040896.1-201ENST00000613819 479 ntBASIC2.21□□□□□ -2.06
COL4A4P53420 AC010205.1-201ENST00000616668 449 ntBASIC2.21□□□□□ -2.06
COL4A4P53420 AC009161.2-201ENST00000624626 138 ntBASIC2.21□□□□□ -2.06
COL4A4P53420 CAPZA2-214ENST00000628758 525 ntTSL 5 BASIC2.21□□□□□ -2.06
COL4A4P53420 MTND5P3-201ENST00000438536 1800 ntBASIC2.21□□□□□ -2.06
COL4A4P53420 MTND4P35-201ENST00000604257 1375 ntBASIC2.2□□□□□ -2.06
COL4A4P53420 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC2.2□□□□□ -2.06
COL4A4P53420 COMMD6-201ENST00000355801 486 ntTSL 2 BASIC2.2□□□□□ -2.06
COL4A4P53420 Y_RNA.67-201ENST00000362870 100 ntBASIC2.2□□□□□ -2.06
COL4A4P53420 Y_RNA.86-201ENST00000363020 111 ntBASIC2.2□□□□□ -2.06
COL4A4P53420 Y_RNA.133-201ENST00000363428 110 ntBASIC2.2□□□□□ -2.06
COL4A4P53420 Y_RNA.422-201ENST00000384054 114 ntBASIC2.2□□□□□ -2.06
COL4A4P53420 RNU6-767P-201ENST00000384132 107 ntBASIC2.2□□□□□ -2.06
COL4A4P53420 SNORA51.12-201ENST00000384448 134 ntBASIC2.2□□□□□ -2.06
COL4A4P53420 RNU6-1160P-201ENST00000384546 104 ntBASIC2.2□□□□□ -2.06
COL4A4P53420 MIR1-2-201ENST00000384961 85 ntBASIC2.2□□□□□ -2.06
COL4A4P53420 ZNF788-202ENST00000397759 777 ntAPPRIS P1 TSL 5 BASIC2.2□□□□□ -2.06
COL4A4P53420 RPS3AP36-201ENST00000398190 775 ntBASIC2.2□□□□□ -2.06
COL4A4P53420 RPS20P2-201ENST00000402520 389 ntBASIC2.2□□□□□ -2.06
COL4A4P53420 MIR1305-201ENST00000408300 86 ntBASIC2.2□□□□□ -2.06
COL4A4P53420 RNU2-8P-201ENST00000410727 190 ntBASIC2.2□□□□□ -2.06
COL4A4P53420 RNU6-1068P-201ENST00000410958 103 ntBASIC2.2□□□□□ -2.06
COL4A4P53420 AC127391.1-201ENST00000411737 98 ntBASIC2.2□□□□□ -2.06
COL4A4P53420 AC073311.1-201ENST00000420146 505 ntTSL 5 BASIC2.2□□□□□ -2.06
COL4A4P53420 SNRPEP10-201ENST00000420249 274 ntBASIC2.2□□□□□ -2.06
COL4A4P53420 AC013402.2-201ENST00000424257 437 ntTSL 3 BASIC2.2□□□□□ -2.06
COL4A4P53420 AL157786.1-206ENST00000424422 551 ntTSL 3 BASIC2.2□□□□□ -2.06
COL4A4P53420 MTCO3P46-201ENST00000425787 232 ntBASIC2.2□□□□□ -2.06
COL4A4P53420 MAP3K13-207ENST00000438798 388 ntTSL 2 BASIC2.2□□□□□ -2.06
COL4A4P53420 AC073342.1-202ENST00000446192 457 ntTSL 5 BASIC2.2□□□□□ -2.06
COL4A4P53420 AC002383.1-201ENST00000448260 671 ntTSL 5 BASIC2.2□□□□□ -2.06
COL4A4P53420 MTCO1P27-201ENST00000448269 226 ntBASIC2.2□□□□□ -2.06
COL4A4P53420 AC079448.1-201ENST00000449377 373 ntBASIC2.2□□□□□ -2.06
COL4A4P53420 RNU6-329P-201ENST00000459618 107 ntBASIC2.2□□□□□ -2.06
COL4A4P53420 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC2.2□□□□□ -2.06
COL4A4P53420 SNORD60.2-201ENST00000516883 86 ntBASIC2.2□□□□□ -2.06
COL4A4P53420 RN7SKP234-201ENST00000517173 224 ntBASIC2.2□□□□□ -2.06
COL4A4P53420 AC011377.1-201ENST00000517708 275 ntTSL 3 BASIC2.2□□□□□ -2.06
COL4A4P53420 AC090502.2-201ENST00000549267 280 ntBASIC2.2□□□□□ -2.06
COL4A4P53420 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC2.2□□□□□ -2.06
COL4A4P53420 AC093519.1-201ENST00000566109 298 ntBASIC2.2□□□□□ -2.06
COL4A4P53420 AC044873.1-201ENST00000580487 399 ntTSL 3 BASIC2.2□□□□□ -2.06
COL4A4P53420 BNIP3P23-201ENST00000599655 511 ntBASIC2.2□□□□□ -2.06
COL4A4P53420 AC006006.1-201ENST00000603082 144 ntBASIC2.2□□□□□ -2.06
COL4A4P53420 AC090525.3-201ENST00000605601 189 ntBASIC2.2□□□□□ -2.06
COL4A4P53420 RNF219-AS1-205ENST00000605996 792 ntTSL 5 BASIC2.2□□□□□ -2.06
COL4A4P53420 AL161734.1-201ENST00000609720 557 ntBASIC2.2□□□□□ -2.06
COL4A4P53420 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC2.2□□□□□ -2.06
COL4A4P53420 AL133173.2-201ENST00000614270 90 ntBASIC2.2□□□□□ -2.06
COL4A4P53420 LINC00836-202ENST00000626230 1640 ntTSL 2 BASIC2.2□□□□□ -2.06
COL4A4P53420 AC025034.1-201ENST00000552778 1711 ntTSL 3 BASIC2.19□□□□□ -2.06
COL4A4P53420 Y_RNA.132-201ENST00000363421 102 ntBASIC2.19□□□□□ -2.06
COL4A4P53420 Y_RNA.216-201ENST00000364205 93 ntBASIC2.19□□□□□ -2.06
COL4A4P53420 OR1A2-201ENST00000381951 930 ntAPPRIS P1 BASIC2.19□□□□□ -2.06
COL4A4P53420 Y_RNA.394-201ENST00000383942 103 ntBASIC2.19□□□□□ -2.06
COL4A4P53420 RNU6ATAC38P-201ENST00000408119 126 ntBASIC2.19□□□□□ -2.06
COL4A4P53420 RN7SKP266-201ENST00000410232 287 ntBASIC2.19□□□□□ -2.06
COL4A4P53420 GPM6BP2-201ENST00000432046 144 ntBASIC2.19□□□□□ -2.06
COL4A4P53420 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC2.19□□□□□ -2.06
COL4A4P53420 AC016691.1-201ENST00000441321 413 ntBASIC2.19□□□□□ -2.06
COL4A4P53420 AC018643.1-201ENST00000445459 414 ntTSL 5 BASIC2.19□□□□□ -2.06
COL4A4P53420 GPM6BP1-201ENST00000446387 144 ntBASIC2.19□□□□□ -2.06
COL4A4P53420 AL645939.1-201ENST00000453429 797 ntBASIC2.19□□□□□ -2.06
COL4A4P53420 AC023194.1-201ENST00000493084 308 ntBASIC2.19□□□□□ -2.06
COL4A4P53420 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC2.19□□□□□ -2.06
COL4A4P53420 AC103851.1-201ENST00000506833 274 ntBASIC2.19□□□□□ -2.06
COL4A4P53420 TTC39CP1-201ENST00000512513 755 ntBASIC2.19□□□□□ -2.06
COL4A4P53420 RNU6-885P-201ENST00000516607 104 ntBASIC2.19□□□□□ -2.06
COL4A4P53420 RNU6-201P-201ENST00000517100 61 ntBASIC2.19□□□□□ -2.06
COL4A4P53420 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC2.19□□□□□ -2.06
COL4A4P53420 AC126407.1-201ENST00000563044 566 ntTSL 4 BASIC2.19□□□□□ -2.06
COL4A4P53420 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC2.19□□□□□ -2.06
COL4A4P53420 AC103810.1-201ENST00000579873 453 ntBASIC2.19□□□□□ -2.06
COL4A4P53420 AC006504.6-201ENST00000590142 199 ntBASIC2.19□□□□□ -2.06
COL4A4P53420 AC008737.2-201ENST00000599446 118 ntBASIC2.19□□□□□ -2.06
COL4A4P53420 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC2.19□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 160.6 ms