Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 AC060771.1-201ENST00000582031 164 ntBASIC1.53□□□□□ -2.16
COL18A1P39060 AL121652.1-201ENST00000608851 448 ntBASIC1.53□□□□□ -2.16
COL18A1P39060 DPY19L1-208ENST00000612226 607 ntTSL 1 (best) BASIC1.53□□□□□ -2.16
COL18A1P39060 AL161423.1-201ENST00000613700 262 ntBASIC1.53□□□□□ -2.16
COL18A1P39060 AL031601.2-202ENST00000622650 282 ntBASIC1.53□□□□□ -2.16
COL18A1P39060 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.53□□□□□ -2.16
COL18A1P39060 PICALM-209ENST00000528398 2049 ntTSL 2 BASIC1.53□□□□□ -2.16
COL18A1P39060 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC1.53□□□□□ -2.16
COL18A1P39060 MEIG1-201ENST00000378240 507 ntAPPRIS P1 TSL 2 BASIC1.52□□□□□ -2.17
COL18A1P39060 AL136310.1-201ENST00000404926 654 ntBASIC1.52□□□□□ -2.17
COL18A1P39060 U6atac.2-201ENST00000408644 118 ntBASIC1.52□□□□□ -2.17
COL18A1P39060 MTCO1P17-201ENST00000411522 491 ntBASIC1.52□□□□□ -2.17
COL18A1P39060 LINC01934-201ENST00000414750 391 ntTSL 3 BASIC1.52□□□□□ -2.17
COL18A1P39060 BTF3L4P3-201ENST00000418879 476 ntBASIC1.52□□□□□ -2.17
COL18A1P39060 USP9YP11-201ENST00000427537 717 ntBASIC1.52□□□□□ -2.17
COL18A1P39060 AC244035.1-201ENST00000430042 390 ntBASIC1.52□□□□□ -2.17
COL18A1P39060 AC016691.1-201ENST00000441321 413 ntBASIC1.52□□□□□ -2.17
COL18A1P39060 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC1.52□□□□□ -2.17
COL18A1P39060 MTATP6P7-201ENST00000453315 681 ntBASIC1.52□□□□□ -2.17
COL18A1P39060 AC022493.1-201ENST00000492984 337 ntBASIC1.52□□□□□ -2.17
COL18A1P39060 UBA6-AS1-204ENST00000502758 547 ntTSL 4 BASIC1.52□□□□□ -2.17
COL18A1P39060 AC093809.1-201ENST00000509155 340 ntBASIC1.52□□□□□ -2.17
COL18A1P39060 RNA5SP436-201ENST00000516020 115 ntBASIC1.52□□□□□ -2.17
COL18A1P39060 SNORA19.3-201ENST00000516165 130 ntBASIC1.52□□□□□ -2.17
COL18A1P39060 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC1.52□□□□□ -2.17
COL18A1P39060 HTN3-205ENST00000530128 775 ntAPPRIS P2 TSL 2 BASIC1.52□□□□□ -2.17
COL18A1P39060 BLOC1S6-207ENST00000565216 573 ntTSL 3 BASIC1.52□□□□□ -2.17
COL18A1P39060 MIR5000-201ENST00000577717 103 ntBASIC1.52□□□□□ -2.17
COL18A1P39060 AC005261.5-201ENST00000596280 355 ntBASIC1.52□□□□□ -2.17
COL18A1P39060 BNIP3P27-201ENST00000599991 412 ntBASIC1.52□□□□□ -2.17
COL18A1P39060 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC1.52□□□□□ -2.17
COL18A1P39060 AC025165.5-201ENST00000602802 578 ntBASIC1.52□□□□□ -2.17
COL18A1P39060 AL021997.1-201ENST00000605757 193 ntBASIC1.52□□□□□ -2.17
COL18A1P39060 RNU6-88P-201ENST00000606801 100 ntBASIC1.52□□□□□ -2.17
COL18A1P39060 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC1.52□□□□□ -2.17
COL18A1P39060 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC1.52□□□□□ -2.17
COL18A1P39060 SPAG11A-202ENST00000326625 445 ntTSL 5 BASIC1.52□□□□□ -2.17
COL18A1P39060 EDDM3A-201ENST00000326842 927 ntAPPRIS P1 TSL 1 (best) BASIC1.52□□□□□ -2.17
COL18A1P39060 RNU6-1167P-201ENST00000363227 94 ntBASIC1.52□□□□□ -2.17
COL18A1P39060 RNU2-40P-201ENST00000410833 196 ntBASIC1.52□□□□□ -2.17
COL18A1P39060 AL030996.1-201ENST00000411430 235 ntBASIC1.52□□□□□ -2.17
COL18A1P39060 SPATA17-AS1-201ENST00000415765 420 ntTSL 5 BASIC1.52□□□□□ -2.17
COL18A1P39060 AL449283.1-202ENST00000418249 604 ntBASIC1.52□□□□□ -2.17
COL18A1P39060 AL162726.4-201ENST00000422010 673 ntTSL 5 BASIC1.52□□□□□ -2.17
COL18A1P39060 MTND1P28-201ENST00000435623 950 ntBASIC1.52□□□□□ -2.17
COL18A1P39060 AP000949.1-201ENST00000438328 629 ntBASIC1.52□□□□□ -2.17
COL18A1P39060 AC018816.1-203ENST00000441894 338 ntTSL 3 BASIC1.52□□□□□ -2.17
COL18A1P39060 AC020550.1-201ENST00000447385 163 ntBASIC1.52□□□□□ -2.17
COL18A1P39060 CECR9-201ENST00000453421 199 ntBASIC1.52□□□□□ -2.17
COL18A1P39060 RPS27AP10-201ENST00000496103 208 ntBASIC1.52□□□□□ -2.17
COL18A1P39060 RNA5SP216-201ENST00000516111 123 ntBASIC1.52□□□□□ -2.17
COL18A1P39060 RN7SKP258-201ENST00000517151 304 ntBASIC1.52□□□□□ -2.17
COL18A1P39060 MTND1P36-201ENST00000522384 936 ntBASIC1.52□□□□□ -2.17
COL18A1P39060 MIR3122-201ENST00000577243 73 ntBASIC1.52□□□□□ -2.17
COL18A1P39060 MIR4765-201ENST00000585007 77 ntBASIC1.52□□□□□ -2.17
COL18A1P39060 AC016229.1-201ENST00000589242 487 ntTSL 5 BASIC1.52□□□□□ -2.17
COL18A1P39060 AC099811.4-201ENST00000592536 496 ntTSL 2 BASIC1.52□□□□□ -2.17
COL18A1P39060 AC069294.1-201ENST00000608397 350 ntBASIC1.52□□□□□ -2.17
COL18A1P39060 AC004908.2-201ENST00000609090 574 ntBASIC1.52□□□□□ -2.17
COL18A1P39060 DUSP12P1-201ENST00000612874 516 ntBASIC1.52□□□□□ -2.17
COL18A1P39060 SERPINI2-209ENST00000616363 1769 ntTSL 5 BASIC1.51□□□□□ -2.17
COL18A1P39060 RNU1-148P-201ENST00000384472 162 ntBASIC1.51□□□□□ -2.17
COL18A1P39060 MIR758-201ENST00000390227 88 ntBASIC1.51□□□□□ -2.17
COL18A1P39060 AC007179.1-201ENST00000415159 438 ntTSL 3 BASIC1.51□□□□□ -2.17
COL18A1P39060 AC083875.1-201ENST00000419509 405 ntBASIC1.51□□□□□ -2.17
COL18A1P39060 GPM6BP2-201ENST00000432046 144 ntBASIC1.51□□□□□ -2.17
COL18A1P39060 FABP5P14-201ENST00000437273 393 ntBASIC1.51□□□□□ -2.17
COL18A1P39060 AL358794.1-201ENST00000445689 381 ntBASIC1.51□□□□□ -2.17
COL18A1P39060 GPM6BP1-201ENST00000446387 144 ntBASIC1.51□□□□□ -2.17
COL18A1P39060 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC1.51□□□□□ -2.17
COL18A1P39060 AL441985.1-201ENST00000457727 251 ntBASIC1.51□□□□□ -2.17
COL18A1P39060 AC104982.1-201ENST00000478775 574 ntBASIC1.51□□□□□ -2.17
COL18A1P39060 AC008883.2-201ENST00000505796 414 ntTSL 3 BASIC1.51□□□□□ -2.17
COL18A1P39060 RNU6-405P-201ENST00000516637 110 ntBASIC1.51□□□□□ -2.17
COL18A1P39060 RNU6-113P-201ENST00000516653 101 ntBASIC1.51□□□□□ -2.17
COL18A1P39060 RNA5SP165-201ENST00000517142 115 ntBASIC1.51□□□□□ -2.17
COL18A1P39060 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC1.51□□□□□ -2.17
COL18A1P39060 AC023538.1-201ENST00000534576 736 ntBASIC1.51□□□□□ -2.17
COL18A1P39060 AGGF1P5-201ENST00000567900 919 ntBASIC1.51□□□□□ -2.17
COL18A1P39060 AC016382.1-201ENST00000583580 387 ntTSL 3 BASIC1.51□□□□□ -2.17
COL18A1P39060 AC011939.3-201ENST00000613686 466 ntBASIC1.51□□□□□ -2.17
COL18A1P39060 SNORA18.2-201ENST00000383865 132 ntBASIC1.5□□□□□ -2.17
COL18A1P39060 Y_RNA.472-201ENST00000384322 102 ntBASIC1.5□□□□□ -2.17
COL18A1P39060 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC1.5□□□□□ -2.17
COL18A1P39060 RPL26P27-201ENST00000414397 437 ntBASIC1.5□□□□□ -2.17
COL18A1P39060 AC073311.1-201ENST00000420146 505 ntTSL 5 BASIC1.5□□□□□ -2.17
COL18A1P39060 EIF4EP4-201ENST00000424916 578 ntBASIC1.5□□□□□ -2.17
COL18A1P39060 SKA2P1-201ENST00000425592 390 ntBASIC1.5□□□□□ -2.17
COL18A1P39060 LINC01724-201ENST00000430519 621 ntTSL 3 BASIC1.5□□□□□ -2.17
COL18A1P39060 AC011891.1-201ENST00000437088 432 ntTSL 3 BASIC1.5□□□□□ -2.17
COL18A1P39060 EEF1E1P1-201ENST00000446998 430 ntBASIC1.5□□□□□ -2.17
COL18A1P39060 AL583803.1-201ENST00000454262 334 ntTSL 3 BASIC1.5□□□□□ -2.17
COL18A1P39060 AL121769.1-201ENST00000469473 401 ntBASIC1.5□□□□□ -2.17
COL18A1P39060 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC1.5□□□□□ -2.17
COL18A1P39060 AC026719.1-201ENST00000506059 456 ntTSL 3 BASIC1.5□□□□□ -2.17
COL18A1P39060 AP003469.3-201ENST00000518090 473 ntTSL 3 BASIC1.5□□□□□ -2.17
COL18A1P39060 AC091163.3-201ENST00000518269 1144 ntBASIC1.5□□□□□ -2.17
COL18A1P39060 AL157938.2-201ENST00000587264 894 ntTSL 5 BASIC1.5□□□□□ -2.17
COL18A1P39060 AC123912.5-201ENST00000605470 343 ntBASIC1.5□□□□□ -2.17
COL18A1P39060 AL589743.7-201ENST00000612637 233 ntBASIC1.5□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 119.5 ms