Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC3.34□□□□□ -1.87
CIITAP33076 RANP3-201ENST00000530970 276 ntBASIC3.34□□□□□ -1.87
CIITAP33076 AC022080.3-201ENST00000544433 482 ntBASIC3.34□□□□□ -1.87
CIITAP33076 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
CIITAP33076 AL355102.1-201ENST00000555383 460 ntTSL 5 BASIC3.34□□□□□ -1.87
CIITAP33076 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC3.34□□□□□ -1.87
CIITAP33076 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC3.34□□□□□ -1.87
CIITAP33076 AL670379.4-201ENST00000605279 254 ntBASIC3.34□□□□□ -1.87
CIITAP33076 AL158032.1-201ENST00000605401 106 ntBASIC3.34□□□□□ -1.87
CIITAP33076 AC107294.3-201ENST00000609211 526 ntBASIC3.34□□□□□ -1.87
CIITAP33076 AL132765.2-201ENST00000610812 351 ntBASIC3.34□□□□□ -1.87
CIITAP33076 AC034102.8-201ENST00000615146 484 ntBASIC3.34□□□□□ -1.87
CIITAP33076 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC3.34□□□□□ -1.87
CIITAP33076 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC3.34□□□□□ -1.87
CIITAP33076 AL133216.2-202ENST00000634512 349 ntBASIC3.34□□□□□ -1.87
CIITAP33076 ADGRG7-202ENST00000475887 2035 ntTSL 2 BASIC3.34□□□□□ -1.88
CIITAP33076 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC3.33□□□□□ -1.88
CIITAP33076 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC3.33□□□□□ -1.88
CIITAP33076 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC3.33□□□□□ -1.88
CIITAP33076 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
CIITAP33076 MIR148B-201ENST00000362252 99 ntBASIC3.33□□□□□ -1.88
CIITAP33076 RNU4-73P-201ENST00000363164 141 ntBASIC3.33□□□□□ -1.88
CIITAP33076 Y_RNA.111-201ENST00000363248 100 ntBASIC3.33□□□□□ -1.88
CIITAP33076 Y_RNA.184-201ENST00000363884 108 ntBASIC3.33□□□□□ -1.88
CIITAP33076 Y_RNA.373-201ENST00000365600 103 ntBASIC3.33□□□□□ -1.88
CIITAP33076 RNU6-190P-201ENST00000384154 102 ntBASIC3.33□□□□□ -1.88
CIITAP33076 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC3.33□□□□□ -1.88
CIITAP33076 AL592114.1-201ENST00000403842 483 ntBASIC3.33□□□□□ -1.88
CIITAP33076 AL162726.4-201ENST00000422010 673 ntTSL 5 BASIC3.33□□□□□ -1.88
CIITAP33076 AC093019.1-201ENST00000443135 252 ntBASIC3.33□□□□□ -1.88
CIITAP33076 AC104058.1-201ENST00000448028 297 ntBASIC3.33□□□□□ -1.88
CIITAP33076 RPL37P4-201ENST00000448908 268 ntBASIC3.33□□□□□ -1.88
CIITAP33076 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC3.33□□□□□ -1.88
CIITAP33076 AC103851.1-201ENST00000506833 274 ntBASIC3.33□□□□□ -1.88
CIITAP33076 RNU6-677P-201ENST00000516914 101 ntBASIC3.33□□□□□ -1.88
CIITAP33076 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC3.33□□□□□ -1.88
CIITAP33076 AC107016.2-201ENST00000547968 190 ntBASIC3.33□□□□□ -1.88
CIITAP33076 AC091534.1-202ENST00000549953 468 ntTSL 5 BASIC3.33□□□□□ -1.88
CIITAP33076 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC3.33□□□□□ -1.88
CIITAP33076 AC013553.2-201ENST00000604244 589 ntBASIC3.33□□□□□ -1.88
CIITAP33076 MIR15A-201ENST00000607334 83 ntBASIC3.33□□□□□ -1.88
CIITAP33076 AL359547.2-201ENST00000615810 418 ntBASIC3.33□□□□□ -1.88
CIITAP33076 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC3.33□□□□□ -1.88
CIITAP33076 MTND4P29-201ENST00000503122 1372 ntBASIC3.33□□□□□ -1.88
CIITAP33076 ATP8A2P2-201ENST00000437678 1568 ntBASIC3.33□□□□□ -1.88
CIITAP33076 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC3.32□□□□□ -1.88
CIITAP33076 Y_RNA.100-201ENST00000363141 102 ntBASIC3.32□□□□□ -1.88
CIITAP33076 RNU6-82P-201ENST00000363970 107 ntBASIC3.32□□□□□ -1.88
CIITAP33076 RNU6-371P-201ENST00000364283 108 ntBASIC3.32□□□□□ -1.88
CIITAP33076 RFPL3S-202ENST00000382086 455 ntAPPRIS ALT2 TSL 2 BASIC3.32□□□□□ -1.88
CIITAP33076 RNU6-510P-201ENST00000391239 108 ntBASIC3.32□□□□□ -1.88
CIITAP33076 SAR1AP2-201ENST00000392696 594 ntBASIC3.32□□□□□ -1.88
CIITAP33076 RPL21P3-201ENST00000395517 478 ntBASIC3.32□□□□□ -1.88
CIITAP33076 AL160275.3-201ENST00000423876 471 ntBASIC3.32□□□□□ -1.88
CIITAP33076 AL591212.2-201ENST00000433923 257 ntBASIC3.32□□□□□ -1.88
CIITAP33076 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC3.32□□□□□ -1.88
CIITAP33076 AC146507.2-201ENST00000460608 476 ntBASIC3.32□□□□□ -1.88
CIITAP33076 AC091179.1-201ENST00000461606 579 ntBASIC3.32□□□□□ -1.88
CIITAP33076 AC087588.1-201ENST00000462203 316 ntBASIC3.32□□□□□ -1.88
CIITAP33076 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC3.32□□□□□ -1.88
CIITAP33076 Y_RNA.654-201ENST00000497848 106 ntBASIC3.32□□□□□ -1.88
CIITAP33076 SUMO2P6-201ENST00000505273 288 ntBASIC3.32□□□□□ -1.88
CIITAP33076 RNU6-277P-201ENST00000516272 106 ntBASIC3.32□□□□□ -1.88
CIITAP33076 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
CIITAP33076 AC105029.1-201ENST00000520250 669 ntBASIC3.32□□□□□ -1.88
CIITAP33076 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC3.32□□□□□ -1.88
CIITAP33076 MTCO3P23-201ENST00000561363 289 ntBASIC3.32□□□□□ -1.88
CIITAP33076 AC005357.2-201ENST00000586473 583 ntTSL 2 BASIC3.32□□□□□ -1.88
CIITAP33076 AL451007.1-201ENST00000595491 289 ntBASIC3.32□□□□□ -1.88
CIITAP33076 Z82243.1-201ENST00000609432 473 ntBASIC3.32□□□□□ -1.88
CIITAP33076 ESF1-202ENST00000617257 1470 ntTSL 5 BASIC3.32□□□□□ -1.88
CIITAP33076 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC3.32□□□□□ -1.88
CIITAP33076 AC121333.1-201ENST00000567488 2709 ntBASIC3.32□□□□□ -1.88
CIITAP33076 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC3.32□□□□□ -1.88
CIITAP33076 AC007785.2-201ENST00000598627 1916 ntBASIC3.31□□□□□ -1.88
CIITAP33076 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC3.31□□□□□ -1.88
CIITAP33076 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
CIITAP33076 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
CIITAP33076 RNA5SP139-201ENST00000364340 117 ntBASIC3.31□□□□□ -1.88
CIITAP33076 Y_RNA.301-201ENST00000364990 103 ntBASIC3.31□□□□□ -1.88
CIITAP33076 RNU6-715P-201ENST00000365204 103 ntBASIC3.31□□□□□ -1.88
CIITAP33076 Y_RNA.356-201ENST00000365475 113 ntBASIC3.31□□□□□ -1.88
CIITAP33076 LINC00587-201ENST00000374801 590 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
CIITAP33076 MT-TD-201ENST00000387419 68 ntBASIC3.31□□□□□ -1.88
CIITAP33076 AL139039.1-201ENST00000401900 692 ntBASIC3.31□□□□□ -1.88
CIITAP33076 NDUFB4P4-201ENST00000404822 243 ntBASIC3.31□□□□□ -1.88
CIITAP33076 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC3.31□□□□□ -1.88
CIITAP33076 POLHP1-201ENST00000411806 470 ntBASIC3.31□□□□□ -1.88
CIITAP33076 EEF1A1P41-201ENST00000414667 207 ntBASIC3.31□□□□□ -1.88
CIITAP33076 BX682237.1-201ENST00000415016 335 ntBASIC3.31□□□□□ -1.88
CIITAP33076 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC3.31□□□□□ -1.88
CIITAP33076 HSPE1P1-201ENST00000421494 318 ntBASIC3.31□□□□□ -1.88
CIITAP33076 AL109947.1-201ENST00000423747 382 ntTSL 2 BASIC3.31□□□□□ -1.88
CIITAP33076 MTND4P28-201ENST00000426217 387 ntBASIC3.31□□□□□ -1.88
CIITAP33076 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC3.31□□□□□ -1.88
CIITAP33076 AC092573.2-201ENST00000434546 243 ntBASIC3.31□□□□□ -1.88
CIITAP33076 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC3.31□□□□□ -1.88
CIITAP33076 AC107083.1-201ENST00000439643 279 ntBASIC3.31□□□□□ -1.88
CIITAP33076 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC3.31□□□□□ -1.88
CIITAP33076 RNU6-953P-201ENST00000459154 107 ntBASIC3.31□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 107.2 ms