Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
SMARCA1P28370 CPD-202ENST00000543464 4007 ntTSL 2 BASIC3.73□□□□□ -1.81
SMARCA1P28370 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
SMARCA1P28370 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC3.73□□□□□ -1.81
SMARCA1P28370 GEN1-201ENST00000317402 9854 ntAPPRIS P1 TSL 2 BASIC3.72□□□□□ -1.81
SMARCA1P28370 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
SMARCA1P28370 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
SMARCA1P28370 Y_RNA.33-201ENST00000362591 102 ntBASIC3.72□□□□□ -1.81
SMARCA1P28370 Y_RNA.339-201ENST00000365325 102 ntBASIC3.72□□□□□ -1.81
SMARCA1P28370 SNORA7.4-201ENST00000384249 137 ntBASIC3.72□□□□□ -1.81
SMARCA1P28370 RNU6-1179P-201ENST00000384667 107 ntBASIC3.72□□□□□ -1.81
SMARCA1P28370 RNU6-1025P-201ENST00000410629 104 ntBASIC3.72□□□□□ -1.81
SMARCA1P28370 RNA5SP38-201ENST00000410750 119 ntBASIC3.72□□□□□ -1.81
SMARCA1P28370 RNU6-607P-201ENST00000411283 108 ntBASIC3.72□□□□□ -1.81
SMARCA1P28370 CYCSP33-201ENST00000414485 327 ntBASIC3.72□□□□□ -1.81
SMARCA1P28370 VN1R36P-201ENST00000414936 291 ntBASIC3.72□□□□□ -1.81
SMARCA1P28370 AL353621.1-201ENST00000418219 243 ntBASIC3.72□□□□□ -1.81
SMARCA1P28370 AL512844.2-201ENST00000433990 593 ntBASIC3.72□□□□□ -1.81
SMARCA1P28370 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC3.72□□□□□ -1.81
SMARCA1P28370 HIGD1AP11-201ENST00000438361 280 ntBASIC3.72□□□□□ -1.81
SMARCA1P28370 Z82210.1-201ENST00000440037 231 ntBASIC3.72□□□□□ -1.81
SMARCA1P28370 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC3.72□□□□□ -1.81
SMARCA1P28370 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC3.72□□□□□ -1.81
SMARCA1P28370 AC006539.3-201ENST00000454258 129 ntBASIC3.72□□□□□ -1.81
SMARCA1P28370 MTND4P17-201ENST00000470444 350 ntBASIC3.72□□□□□ -1.81
SMARCA1P28370 HMGN2P13-201ENST00000476476 274 ntBASIC3.72□□□□□ -1.81
SMARCA1P28370 TRBVA-201ENST00000498804 316 ntBASIC3.72□□□□□ -1.81
SMARCA1P28370 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC3.72□□□□□ -1.81
SMARCA1P28370 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC3.72□□□□□ -1.81
SMARCA1P28370 LIAS-206ENST00000513731 826 ntTSL 5 BASIC3.72□□□□□ -1.81
SMARCA1P28370 Y_RNA.682-201ENST00000516457 100 ntBASIC3.72□□□□□ -1.81
SMARCA1P28370 SNORA25.17-201ENST00000517184 124 ntBASIC3.72□□□□□ -1.81
SMARCA1P28370 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC3.72□□□□□ -1.81
SMARCA1P28370 APAF1-207ENST00000547743 651 ntTSL 3 BASIC3.72□□□□□ -1.81
SMARCA1P28370 AC016866.2-201ENST00000585251 502 ntTSL 2 BASIC3.72□□□□□ -1.81
SMARCA1P28370 AL356055.1-201ENST00000602528 446 ntBASIC3.72□□□□□ -1.81
SMARCA1P28370 AL355376.2-201ENST00000603866 267 ntTSL 5 BASIC3.72□□□□□ -1.81
SMARCA1P28370 AL161756.2-201ENST00000604597 246 ntBASIC3.72□□□□□ -1.81
SMARCA1P28370 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC3.72□□□□□ -1.81
SMARCA1P28370 MIR1302-1-201ENST00000637932 143 ntBASIC3.72□□□□□ -1.81
SMARCA1P28370 MIR622-201ENST00000638396 96 ntBASIC3.72□□□□□ -1.81
SMARCA1P28370 AC103988.1-201ENST00000566382 2177 ntBASIC3.72□□□□□ -1.81
SMARCA1P28370 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC3.71□□□□□ -1.81
SMARCA1P28370 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC3.71□□□□□ -1.81
SMARCA1P28370 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC3.71□□□□□ -1.82
SMARCA1P28370 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
SMARCA1P28370 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
SMARCA1P28370 SNORD3E-201ENST00000362899 217 ntBASIC3.71□□□□□ -1.82
SMARCA1P28370 DEFB125-201ENST00000382410 587 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
SMARCA1P28370 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC3.71□□□□□ -1.82
SMARCA1P28370 RNU2-3P-201ENST00000410144 191 ntBASIC3.71□□□□□ -1.82
SMARCA1P28370 AL022329.2-201ENST00000413494 660 ntTSL 5 BASIC3.71□□□□□ -1.82
SMARCA1P28370 AC051618.1-201ENST00000414295 207 ntTSL 3 BASIC3.71□□□□□ -1.82
SMARCA1P28370 NCOR1P3-201ENST00000420479 303 ntBASIC3.71□□□□□ -1.82
SMARCA1P28370 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC3.71□□□□□ -1.82
SMARCA1P28370 MYL8P-204ENST00000431574 518 ntBASIC3.71□□□□□ -1.82
SMARCA1P28370 AC233279.1-201ENST00000455300 423 ntBASIC3.71□□□□□ -1.82
SMARCA1P28370 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC3.71□□□□□ -1.82
SMARCA1P28370 MTND4LP22-201ENST00000508209 276 ntBASIC3.71□□□□□ -1.82
SMARCA1P28370 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC3.71□□□□□ -1.82
SMARCA1P28370 AC126768.3-201ENST00000514519 560 ntTSL 4 BASIC3.71□□□□□ -1.82
SMARCA1P28370 RNU1-86P-201ENST00000516108 154 ntBASIC3.71□□□□□ -1.82
SMARCA1P28370 RNU1-107P-201ENST00000516617 154 ntBASIC3.71□□□□□ -1.82
SMARCA1P28370 RNU6-566P-201ENST00000516790 107 ntBASIC3.71□□□□□ -1.82
SMARCA1P28370 RNA5SP165-201ENST00000517142 115 ntBASIC3.71□□□□□ -1.82
SMARCA1P28370 SNORA70.24-201ENST00000517233 118 ntBASIC3.71□□□□□ -1.82
SMARCA1P28370 AC009902.1-201ENST00000519351 183 ntBASIC3.71□□□□□ -1.82
SMARCA1P28370 NDUFB9P3-201ENST00000521269 501 ntBASIC3.71□□□□□ -1.82
SMARCA1P28370 CYCSP27-201ENST00000527643 293 ntBASIC3.71□□□□□ -1.82
SMARCA1P28370 TRAV37-201ENST00000553906 342 ntBASIC3.71□□□□□ -1.82
SMARCA1P28370 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC3.71□□□□□ -1.82
SMARCA1P28370 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC3.71□□□□□ -1.82
SMARCA1P28370 AC004805.2-201ENST00000605382 482 ntBASIC3.71□□□□□ -1.82
SMARCA1P28370 AL442067.2-201ENST00000614033 363 ntBASIC3.71□□□□□ -1.82
SMARCA1P28370 AC159540.2-206ENST00000619371 355 ntTSL 3 BASIC3.71□□□□□ -1.82
SMARCA1P28370 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC3.71□□□□□ -1.82
SMARCA1P28370 AL031601.2-202ENST00000622650 282 ntBASIC3.71□□□□□ -1.82
SMARCA1P28370 AC018692.3-201ENST00000623929 123 ntBASIC3.71□□□□□ -1.82
SMARCA1P28370 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC3.71□□□□□ -1.82
SMARCA1P28370 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
SMARCA1P28370 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC3.71□□□□□ -1.82
SMARCA1P28370 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC3.71□□□□□ -1.82
SMARCA1P28370 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC3.71□□□□□ -1.82
SMARCA1P28370 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC3.71□□□□□ -1.82
SMARCA1P28370 AC022336.2-201ENST00000568966 2538 ntBASIC3.71□□□□□ -1.82
SMARCA1P28370 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
SMARCA1P28370 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC3.7□□□□□ -1.82
SMARCA1P28370 SNORA38.1-201ENST00000364172 131 ntBASIC3.7□□□□□ -1.82
SMARCA1P28370 RNU6-266P-201ENST00000364225 107 ntBASIC3.7□□□□□ -1.82
SMARCA1P28370 RNU6-395P-201ENST00000365662 106 ntBASIC3.7□□□□□ -1.82
SMARCA1P28370 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC3.7□□□□□ -1.82
SMARCA1P28370 RPL7P10-201ENST00000417407 739 ntBASIC3.7□□□□□ -1.82
SMARCA1P28370 AL109947.1-201ENST00000423747 382 ntTSL 2 BASIC3.7□□□□□ -1.82
SMARCA1P28370 AL136234.1-201ENST00000437080 349 ntTSL 2 BASIC3.7□□□□□ -1.82
SMARCA1P28370 DCLRE1CP1-201ENST00000454630 470 ntBASIC3.7□□□□□ -1.82
SMARCA1P28370 HMGN1P18-201ENST00000457642 277 ntBASIC3.7□□□□□ -1.82
SMARCA1P28370 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC3.7□□□□□ -1.82
SMARCA1P28370 AC008716.1-201ENST00000511084 513 ntBASIC3.7□□□□□ -1.82
SMARCA1P28370 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC3.7□□□□□ -1.82
SMARCA1P28370 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC3.7□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 136.3 ms