Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 SNORA3A-201ENST00000364113 130 ntBASIC0.28□□□□□ -2.37
COL6A3P12111 RPS15AP27-201ENST00000449183 343 ntBASIC0.28□□□□□ -2.37
COL6A3P12111 MTND2P8-201ENST00000450555 1025 ntBASIC0.28□□□□□ -2.37
COL6A3P12111 RPL26P26-201ENST00000480251 434 ntBASIC0.28□□□□□ -2.37
COL6A3P12111 AC114912.1-201ENST00000503394 546 ntTSL 3 BASIC0.28□□□□□ -2.37
COL6A3P12111 AP002075.1-201ENST00000505091 603 ntTSL 3 BASIC0.28□□□□□ -2.37
COL6A3P12111 AC008883.2-201ENST00000505796 414 ntTSL 3 BASIC0.28□□□□□ -2.37
COL6A3P12111 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC0.28□□□□□ -2.37
COL6A3P12111 RNU6-732P-201ENST00000516033 103 ntBASIC0.28□□□□□ -2.37
COL6A3P12111 AC008562.1-201ENST00000521763 330 ntBASIC0.28□□□□□ -2.37
COL6A3P12111 AC016256.1-201ENST00000547971 354 ntBASIC0.28□□□□□ -2.37
COL6A3P12111 AC090049.1-201ENST00000551075 1011 ntTSL 3 BASIC0.28□□□□□ -2.37
COL6A3P12111 MIR4324-201ENST00000584846 72 ntBASIC0.28□□□□□ -2.37
COL6A3P12111 AC021749.1-201ENST00000604322 607 ntBASIC0.28□□□□□ -2.37
COL6A3P12111 AL450336.1-201ENST00000605180 586 ntBASIC0.28□□□□□ -2.37
COL6A3P12111 AC159540.2-206ENST00000619371 355 ntTSL 3 BASIC0.28□□□□□ -2.37
COL6A3P12111 AL161616.2-201ENST00000622001 565 ntTSL 4 BASIC0.28□□□□□ -2.37
COL6A3P12111 CFAP97-201ENST00000296775 903 ntTSL 5 BASIC0.27□□□□□ -2.37
COL6A3P12111 AL138880.1-201ENST00000405824 642 ntBASIC0.27□□□□□ -2.37
COL6A3P12111 RPS3AP37-201ENST00000419176 745 ntBASIC0.27□□□□□ -2.37
COL6A3P12111 AC097463.2-201ENST00000421074 142 ntBASIC0.27□□□□□ -2.37
COL6A3P12111 AC023347.2-201ENST00000433994 462 ntBASIC0.27□□□□□ -2.37
COL6A3P12111 MTCO3P17-201ENST00000443775 513 ntBASIC0.27□□□□□ -2.37
COL6A3P12111 AL157882.1-201ENST00000447148 429 ntTSL 3 BASIC0.27□□□□□ -2.37
COL6A3P12111 BX248409.1-201ENST00000455497 255 ntBASIC0.27□□□□□ -2.37
COL6A3P12111 FO393415.3-201ENST00000456424 375 ntTSL 3 BASIC0.27□□□□□ -2.37
COL6A3P12111 AC087477.1-201ENST00000465747 340 ntBASIC0.27□□□□□ -2.37
COL6A3P12111 UBL5P1-201ENST00000507979 193 ntBASIC0.27□□□□□ -2.37
COL6A3P12111 AC008834.1-201ENST00000511612 175 ntBASIC0.27□□□□□ -2.37
COL6A3P12111 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC0.27□□□□□ -2.37
COL6A3P12111 SNORA48.10-201ENST00000516965 160 ntBASIC0.27□□□□□ -2.37
COL6A3P12111 AP004371.1-201ENST00000525240 214 ntBASIC0.27□□□□□ -2.37
COL6A3P12111 AC007751.1-201ENST00000529260 376 ntBASIC0.27□□□□□ -2.37
COL6A3P12111 PCNAP1-202ENST00000595299 752 ntBASIC0.27□□□□□ -2.37
COL6A3P12111 AL355810.1-201ENST00000614629 552 ntBASIC0.27□□□□□ -2.37
COL6A3P12111 AL117342.1-201ENST00000404861 406 ntBASIC0.27□□□□□ -2.37
COL6A3P12111 RPL37P10-201ENST00000412884 288 ntBASIC0.27□□□□□ -2.37
COL6A3P12111 AL023581.1-201ENST00000423500 455 ntTSL 2 BASIC0.27□□□□□ -2.37
COL6A3P12111 AC116035.1-201ENST00000431057 517 ntTSL 3 BASIC0.27□□□□□ -2.37
COL6A3P12111 RPEP5-201ENST00000441137 268 ntBASIC0.27□□□□□ -2.37
COL6A3P12111 SNRPGP6-201ENST00000451124 220 ntBASIC0.27□□□□□ -2.37
COL6A3P12111 RNU7-23P-201ENST00000459465 62 ntBASIC0.27□□□□□ -2.37
COL6A3P12111 AP001025.1-201ENST00000486139 332 ntBASIC0.27□□□□□ -2.37
COL6A3P12111 AC004062.1-201ENST00000509926 645 ntBASIC0.27□□□□□ -2.37
COL6A3P12111 RNU6-322P-201ENST00000516010 103 ntBASIC0.27□□□□□ -2.37
COL6A3P12111 AC018541.1-202ENST00000518687 584 ntTSL 4 BASIC0.27□□□□□ -2.37
COL6A3P12111 AC027544.2-201ENST00000539313 630 ntTSL 5 BASIC0.27□□□□□ -2.37
COL6A3P12111 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC0.27□□□□□ -2.37
COL6A3P12111 AC136618.2-201ENST00000575091 400 ntBASIC0.27□□□□□ -2.37
COL6A3P12111 AC020913.3-201ENST00000594678 125 ntTSL 3 BASIC0.27□□□□□ -2.37
COL6A3P12111 AC113194.1-201ENST00000606037 500 ntBASIC0.27□□□□□ -2.37
COL6A3P12111 MIR6864-201ENST00000617935 70 ntBASIC0.27□□□□□ -2.37
COL6A3P12111 AC018755.4-201ENST00000619715 454 ntBASIC0.27□□□□□ -2.37
COL6A3P12111 SATB1-AS1-237ENST00000626982 735 ntTSL 5 BASIC0.27□□□□□ -2.37
COL6A3P12111 AP3S1-209ENST00000640413 489 ntTSL 5 BASIC0.27□□□□□ -2.37
COL6A3P12111 BTF3L4P2-201ENST00000392798 346 ntBASIC0.27□□□□□ -2.37
COL6A3P12111 RPS3AP24-201ENST00000407896 734 ntBASIC0.27□□□□□ -2.37
COL6A3P12111 MTCYBP24-201ENST00000420387 1106 ntBASIC0.27□□□□□ -2.37
COL6A3P12111 AC099677.1-201ENST00000420575 175 ntBASIC0.27□□□□□ -2.37
COL6A3P12111 snoU109.2-201ENST00000459316 135 ntBASIC0.27□□□□□ -2.37
COL6A3P12111 AC027335.1-201ENST00000515377 543 ntTSL 4 BASIC0.27□□□□□ -2.37
COL6A3P12111 LINC02301-201ENST00000553760 773 ntTSL 3 BASIC0.27□□□□□ -2.37
COL6A3P12111 MIR5571-201ENST00000577998 113 ntBASIC0.27□□□□□ -2.37
COL6A3P12111 MIR3616-201ENST00000584070 92 ntBASIC0.27□□□□□ -2.37
COL6A3P12111 VN1R82P-201ENST00000601481 356 ntBASIC0.27□□□□□ -2.37
COL6A3P12111 HSPE1P19-201ENST00000603327 295 ntBASIC0.27□□□□□ -2.37
COL6A3P12111 AC097376.2-202ENST00000608345 433 ntTSL 3 BASIC0.27□□□□□ -2.37
COL6A3P12111 AC040896.1-201ENST00000613819 479 ntBASIC0.27□□□□□ -2.37
COL6A3P12111 AC068880.5-201ENST00000624331 290 ntBASIC0.27□□□□□ -2.37
COL6A3P12111 U3.13-201ENST00000364804 214 ntBASIC0.26□□□□□ -2.37
COL6A3P12111 AC009276.1-201ENST00000422042 253 ntTSL 5 BASIC0.26□□□□□ -2.37
COL6A3P12111 MTCYBP34-201ENST00000439552 670 ntBASIC0.26□□□□□ -2.37
COL6A3P12111 GRM7-AS3-209ENST00000458713 454 ntTSL 3 BASIC0.26□□□□□ -2.37
COL6A3P12111 SYPL1P1-201ENST00000473622 768 ntBASIC0.26□□□□□ -2.37
COL6A3P12111 SNORA31.8-201ENST00000516327 108 ntBASIC0.26□□□□□ -2.37
COL6A3P12111 CIR1P1-201ENST00000524055 1133 ntBASIC0.26□□□□□ -2.37
COL6A3P12111 AL035071.2-201ENST00000565572 459 ntTSL 3 BASIC0.26□□□□□ -2.37
COL6A3P12111 AC090616.5-201ENST00000581225 299 ntTSL 5 BASIC0.26□□□□□ -2.37
COL6A3P12111 SNORD14A-201ENST00000606526 91 ntBASIC0.26□□□□□ -2.37
COL6A3P12111 TEX41-243ENST00000614173 190 ntTSL 5 BASIC0.26□□□□□ -2.37
COL6A3P12111 AC025588.4-201ENST00000615802 908 ntBASIC0.26□□□□□ -2.37
COL6A3P12111 AP002791.1-201ENST00000623291 381 ntBASIC0.26□□□□□ -2.37
COL6A3P12111 U3.8-201ENST00000363675 217 ntBASIC0.26□□□□□ -2.37
COL6A3P12111 TXNDC8-203ENST00000374511 472 ntAPPRIS ALT2 TSL 5 BASIC0.26□□□□□ -2.37
COL6A3P12111 RNU6-317P-201ENST00000384031 107 ntBASIC0.26□□□□□ -2.37
COL6A3P12111 AC079150.1-201ENST00000413043 383 ntTSL 3 BASIC0.26□□□□□ -2.37
COL6A3P12111 AL356320.2-201ENST00000417263 507 ntBASIC0.26□□□□□ -2.37
COL6A3P12111 SEPT2P1-201ENST00000419651 180 ntBASIC0.26□□□□□ -2.37
COL6A3P12111 RPL21P32-201ENST00000419877 477 ntBASIC0.26□□□□□ -2.37
COL6A3P12111 EIF4EP4-201ENST00000424916 578 ntBASIC0.26□□□□□ -2.37
COL6A3P12111 RPL7L1P10-201ENST00000427790 463 ntBASIC0.26□□□□□ -2.37
COL6A3P12111 RNU7-27P-201ENST00000459281 62 ntBASIC0.26□□□□□ -2.37
COL6A3P12111 AP001328.1-201ENST00000528550 176 ntBASIC0.26□□□□□ -2.37
COL6A3P12111 SATB1-AS1-258ENST00000629405 664 ntTSL 5 BASIC0.26□□□□□ -2.37
COL6A3P12111 RNU7-26P-201ENST00000458980 63 ntBASIC0.25□□□□□ -2.37
COL6A3P12111 SETP11-201ENST00000473027 690 ntBASIC0.25□□□□□ -2.37
COL6A3P12111 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC0.25□□□□□ -2.37
COL6A3P12111 AC096577.1-203ENST00000506386 541 ntTSL 3 BASIC0.25□□□□□ -2.37
COL6A3P12111 RN7SKP277-201ENST00000516895 283 ntBASIC0.25□□□□□ -2.37
COL6A3P12111 SNORA44.1-201ENST00000517031 108 ntBASIC0.25□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 97.5 ms