Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 BAZ2B-202ENST00000343439 2364 ntTSL 5 BASIC3.67□□□□□ -1.82
HMGB1P09429 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC3.67□□□□□ -1.82
HMGB1P09429 MT-CYB-201ENST00000361789 1141 ntAPPRIS P1 BASIC3.67□□□□□ -1.82
HMGB1P09429 RNU6-37P-201ENST00000362692 107 ntBASIC3.67□□□□□ -1.82
HMGB1P09429 SNORA3A-201ENST00000364113 130 ntBASIC3.67□□□□□ -1.82
HMGB1P09429 RNU6-11P-201ENST00000364234 107 ntBASIC3.67□□□□□ -1.82
HMGB1P09429 RNU6-7-201ENST00000364784 107 ntBASIC3.67□□□□□ -1.82
HMGB1P09429 RNU6-8-201ENST00000365467 107 ntBASIC3.67□□□□□ -1.82
HMGB1P09429 RNU6-25P-201ENST00000383873 107 ntBASIC3.67□□□□□ -1.82
HMGB1P09429 RNU6-1-201ENST00000383898 107 ntBASIC3.67□□□□□ -1.82
HMGB1P09429 RNU6-48P-201ENST00000384161 107 ntBASIC3.67□□□□□ -1.82
HMGB1P09429 RNU6-36P-201ENST00000384172 107 ntBASIC3.67□□□□□ -1.82
HMGB1P09429 RNU6-4P-201ENST00000384205 107 ntBASIC3.67□□□□□ -1.82
HMGB1P09429 RNU6-5P-201ENST00000384238 107 ntBASIC3.67□□□□□ -1.82
HMGB1P09429 RNU6-622P-201ENST00000384272 103 ntBASIC3.67□□□□□ -1.82
HMGB1P09429 RNU6-3P-201ENST00000384314 107 ntBASIC3.67□□□□□ -1.82
HMGB1P09429 RNU6-16P-201ENST00000384385 107 ntBASIC3.67□□□□□ -1.82
HMGB1P09429 RNU6-15P-201ENST00000384534 107 ntBASIC3.67□□□□□ -1.82
HMGB1P09429 RNU6-2-201ENST00000384627 107 ntBASIC3.67□□□□□ -1.82
HMGB1P09429 RNU6-29P-201ENST00000384637 107 ntBASIC3.67□□□□□ -1.82
HMGB1P09429 SNORA46-201ENST00000384762 135 ntBASIC3.67□□□□□ -1.82
HMGB1P09429 RNU6-9-201ENST00000384776 107 ntBASIC3.67□□□□□ -1.82
HMGB1P09429 RNU6-33P-201ENST00000384793 107 ntBASIC3.67□□□□□ -1.82
HMGB1P09429 AC004870.3-202ENST00000412996 432 ntTSL 3 BASIC3.67□□□□□ -1.82
HMGB1P09429 CDK8P2-201ENST00000415020 547 ntBASIC3.67□□□□□ -1.82
HMGB1P09429 AIMP1P2-201ENST00000425294 312 ntBASIC3.67□□□□□ -1.82
HMGB1P09429 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC3.67□□□□□ -1.82
HMGB1P09429 AL591043.1-201ENST00000432461 424 ntBASIC3.67□□□□□ -1.82
HMGB1P09429 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC3.67□□□□□ -1.82
HMGB1P09429 IFNA11P-201ENST00000446352 526 ntBASIC3.67□□□□□ -1.82
HMGB1P09429 PRSS3P4-201ENST00000453323 162 ntBASIC3.67□□□□□ -1.82
HMGB1P09429 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC3.67□□□□□ -1.82
HMGB1P09429 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC3.67□□□□□ -1.82
HMGB1P09429 AC079140.3-201ENST00000511111 550 ntBASIC3.67□□□□□ -1.82
HMGB1P09429 AC093249.1-201ENST00000567049 203 ntBASIC3.67□□□□□ -1.82
HMGB1P09429 AC008752.3-201ENST00000588113 712 ntBASIC3.67□□□□□ -1.82
HMGB1P09429 RNU6-6P-201ENST00000606623 107 ntBASIC3.67□□□□□ -1.82
HMGB1P09429 AC007684.1-201ENST00000609671 477 ntBASIC3.67□□□□□ -1.82
HMGB1P09429 AL359198.2-201ENST00000611836 194 ntBASIC3.67□□□□□ -1.82
HMGB1P09429 U4atac.1-201ENST00000618345 95 ntBASIC3.67□□□□□ -1.82
HMGB1P09429 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
HMGB1P09429 AC004972.1-201ENST00000623934 2209 ntBASIC3.67□□□□□ -1.82
HMGB1P09429 AMY2B-208ENST00000610648 1736 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
HMGB1P09429 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC3.66□□□□□ -1.82
HMGB1P09429 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC3.66□□□□□ -1.82
HMGB1P09429 RNU6-529P-201ENST00000363383 104 ntBASIC3.66□□□□□ -1.82
HMGB1P09429 Y_RNA.159-201ENST00000363674 87 ntBASIC3.66□□□□□ -1.82
HMGB1P09429 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
HMGB1P09429 MIR34B-201ENST00000385076 84 ntBASIC3.66□□□□□ -1.82
HMGB1P09429 AC068050.1-201ENST00000394891 380 ntBASIC3.66□□□□□ -1.82
HMGB1P09429 RN7SKP27-201ENST00000410684 333 ntBASIC3.66□□□□□ -1.82
HMGB1P09429 AC002486.1-201ENST00000435098 391 ntBASIC3.66□□□□□ -1.82
HMGB1P09429 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC3.66□□□□□ -1.82
HMGB1P09429 AC009238.1-201ENST00000442165 424 ntBASIC3.66□□□□□ -1.82
HMGB1P09429 DARS-AS1-205ENST00000444649 558 ntTSL 3 BASIC3.66□□□□□ -1.82
HMGB1P09429 PRPS1P1-201ENST00000445305 876 ntBASIC3.66□□□□□ -1.82
HMGB1P09429 AC009237.6-201ENST00000446969 424 ntBASIC3.66□□□□□ -1.82
HMGB1P09429 UQCRHP3-201ENST00000451503 251 ntBASIC3.66□□□□□ -1.82
HMGB1P09429 AL358832.1-201ENST00000497800 389 ntBASIC3.66□□□□□ -1.82
HMGB1P09429 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC3.66□□□□□ -1.82
HMGB1P09429 AC105417.1-201ENST00000514691 285 ntBASIC3.66□□□□□ -1.82
HMGB1P09429 LRRC34P2-201ENST00000514850 553 ntBASIC3.66□□□□□ -1.82
HMGB1P09429 IL7-206ENST00000520269 456 ntTSL 3 BASIC3.66□□□□□ -1.82
HMGB1P09429 IL18-204ENST00000528832 795 ntAPPRIS P3 TSL 3 BASIC3.66□□□□□ -1.82
HMGB1P09429 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC3.66□□□□□ -1.82
HMGB1P09429 AP000790.2-201ENST00000534388 522 ntTSL 3 BASIC3.66□□□□□ -1.82
HMGB1P09429 AL138976.2-201ENST00000563989 694 ntBASIC3.66□□□□□ -1.82
HMGB1P09429 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC3.66□□□□□ -1.82
HMGB1P09429 AC023043.3-201ENST00000593113 385 ntBASIC3.66□□□□□ -1.82
HMGB1P09429 AL670379.2-201ENST00000604983 252 ntBASIC3.66□□□□□ -1.82
HMGB1P09429 AC097372.5-201ENST00000623665 376 ntBASIC3.66□□□□□ -1.82
HMGB1P09429 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
HMGB1P09429 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC3.65□□□□□ -1.82
HMGB1P09429 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC3.65□□□□□ -1.83
HMGB1P09429 SNORA63.1-201ENST00000362493 131 ntBASIC3.65□□□□□ -1.83
HMGB1P09429 SNORD116-1-201ENST00000384335 95 ntBASIC3.65□□□□□ -1.83
HMGB1P09429 RNU6-434P-201ENST00000384376 107 ntBASIC3.65□□□□□ -1.83
HMGB1P09429 UBA52P6-201ENST00000399822 382 ntBASIC3.65□□□□□ -1.83
HMGB1P09429 AL139095.1-201ENST00000404326 391 ntBASIC3.65□□□□□ -1.83
HMGB1P09429 GSTA9P-201ENST00000406231 611 ntBASIC3.65□□□□□ -1.83
HMGB1P09429 BTF3P7-201ENST00000407097 488 ntBASIC3.65□□□□□ -1.83
HMGB1P09429 RNU2-29P-201ENST00000410423 189 ntBASIC3.65□□□□□ -1.83
HMGB1P09429 RNA5SP274-201ENST00000410484 108 ntBASIC3.65□□□□□ -1.83
HMGB1P09429 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC3.65□□□□□ -1.83
HMGB1P09429 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC3.65□□□□□ -1.83
HMGB1P09429 AC245054.2-201ENST00000415639 319 ntBASIC3.65□□□□□ -1.83
HMGB1P09429 AL162254.1-202ENST00000419604 497 ntTSL 5 BASIC3.65□□□□□ -1.83
HMGB1P09429 ZFY-AS1-202ENST00000431145 419 ntTSL 3 BASIC3.65□□□□□ -1.83
HMGB1P09429 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC3.65□□□□□ -1.83
HMGB1P09429 AL451074.3-201ENST00000437709 472 ntBASIC3.65□□□□□ -1.83
HMGB1P09429 AL671855.1-201ENST00000446875 1203 ntBASIC3.65□□□□□ -1.83
HMGB1P09429 SNRPFP3-201ENST00000457792 225 ntBASIC3.65□□□□□ -1.83
HMGB1P09429 SCARNA18-201ENST00000459004 134 ntBASIC3.65□□□□□ -1.83
HMGB1P09429 RNU7-63P-201ENST00000459054 62 ntBASIC3.65□□□□□ -1.83
HMGB1P09429 AC074250.1-201ENST00000511117 192 ntBASIC3.65□□□□□ -1.83
HMGB1P09429 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC3.65□□□□□ -1.83
HMGB1P09429 AC109329.1-201ENST00000518744 317 ntBASIC3.65□□□□□ -1.83
HMGB1P09429 AC104211.1-202ENST00000521307 866 ntTSL 3 BASIC3.65□□□□□ -1.83
HMGB1P09429 MIR5004-201ENST00000579078 107 ntBASIC3.65□□□□□ -1.83
HMGB1P09429 MTATP6P3-201ENST00000581686 676 ntBASIC3.65□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 111.1 ms