Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 AL157882.1-201ENST00000447148 429 ntTSL 3 BASIC2.52□□□□□ -2.01
HOXD4P09016 AC073415.1-201ENST00000449240 153 ntBASIC2.52□□□□□ -2.01
HOXD4P09016 LINC00395-202ENST00000451570 415 ntTSL 3 BASIC2.52□□□□□ -2.01
HOXD4P09016 SNORD109B-201ENST00000458961 67 ntBASIC2.52□□□□□ -2.01
HOXD4P09016 SNORD109A-201ENST00000459128 67 ntBASIC2.52□□□□□ -2.01
HOXD4P09016 RNU6-261P-201ENST00000459506 102 ntBASIC2.52□□□□□ -2.01
HOXD4P09016 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC2.52□□□□□ -2.01
HOXD4P09016 AC092436.1-201ENST00000506450 503 ntBASIC2.52□□□□□ -2.01
HOXD4P09016 RNU6-1178P-201ENST00000516674 107 ntBASIC2.52□□□□□ -2.01
HOXD4P09016 RNA5SP503-201ENST00000517047 117 ntBASIC2.52□□□□□ -2.01
HOXD4P09016 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC2.52□□□□□ -2.01
HOXD4P09016 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC2.52□□□□□ -2.01
HOXD4P09016 LINC02546-202ENST00000528119 801 ntTSL 5 BASIC2.52□□□□□ -2.01
HOXD4P09016 AP005435.4-201ENST00000529514 284 ntBASIC2.52□□□□□ -2.01
HOXD4P09016 CLEC2D-214ENST00000543300 399 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
HOXD4P09016 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
HOXD4P09016 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC2.52□□□□□ -2.01
HOXD4P09016 PCLAF-207ENST00000559519 749 ntTSL 2 BASIC2.52□□□□□ -2.01
HOXD4P09016 BNIP3P30-201ENST00000601184 574 ntBASIC2.52□□□□□ -2.01
HOXD4P09016 AL365204.3-201ENST00000612448 685 ntBASIC2.52□□□□□ -2.01
HOXD4P09016 AC011155.2-201ENST00000623202 216 ntBASIC2.52□□□□□ -2.01
HOXD4P09016 ATM-228ENST00000639240 498 ntTSL 5 BASIC2.52□□□□□ -2.01
HOXD4P09016 ATM-230ENST00000640388 578 ntTSL 5 BASIC2.52□□□□□ -2.01
HOXD4P09016 AL137003.2-201ENST00000606924 2538 ntBASIC2.52□□□□□ -2.01
HOXD4P09016 TEX9-207ENST00000560582 2005 ntTSL 3 BASIC2.52□□□□□ -2.01
HOXD4P09016 OLFM3-206ENST00000536598 2801 ntTSL 5 BASIC2.52□□□□□ -2.01
HOXD4P09016 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC2.52□□□□□ -2.01
HOXD4P09016 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC2.52□□□□□ -2.01
HOXD4P09016 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC2.52□□□□□ -2.01
HOXD4P09016 CKAP2P1-201ENST00000555477 2049 ntBASIC2.51□□□□□ -2.01
HOXD4P09016 AL049641.1-201ENST00000441055 1948 ntBASIC2.51□□□□□ -2.01
HOXD4P09016 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC2.51□□□□□ -2.01
HOXD4P09016 RNU6-451P-201ENST00000362921 107 ntBASIC2.51□□□□□ -2.01
HOXD4P09016 RNU6-288P-201ENST00000363690 104 ntBASIC2.51□□□□□ -2.01
HOXD4P09016 RNY3P3-201ENST00000363816 102 ntBASIC2.51□□□□□ -2.01
HOXD4P09016 Y_RNA.255-201ENST00000364581 97 ntBASIC2.51□□□□□ -2.01
HOXD4P09016 SNORD115-7-201ENST00000365306 82 ntBASIC2.51□□□□□ -2.01
HOXD4P09016 RNU6-190P-201ENST00000384154 102 ntBASIC2.51□□□□□ -2.01
HOXD4P09016 RNU6-1035P-201ENST00000384477 107 ntBASIC2.51□□□□□ -2.01
HOXD4P09016 MIR512-1-201ENST00000384913 84 ntBASIC2.51□□□□□ -2.01
HOXD4P09016 AL138827.1-201ENST00000402666 306 ntBASIC2.51□□□□□ -2.01
HOXD4P09016 USP9YP6-201ENST00000413550 854 ntBASIC2.51□□□□□ -2.01
HOXD4P09016 Z85995.1-201ENST00000415547 335 ntBASIC2.51□□□□□ -2.01
HOXD4P09016 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC2.51□□□□□ -2.01
HOXD4P09016 AL033504.1-204ENST00000434985 413 ntTSL 2 BASIC2.51□□□□□ -2.01
HOXD4P09016 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC2.51□□□□□ -2.01
HOXD4P09016 SEPT14P3-201ENST00000439401 183 ntBASIC2.51□□□□□ -2.01
HOXD4P09016 AL732372.2-207ENST00000445840 183 ntBASIC2.51□□□□□ -2.01
HOXD4P09016 AL118520.1-201ENST00000450770 291 ntBASIC2.51□□□□□ -2.01
HOXD4P09016 ZEB1-AS1-204ENST00000450834 576 ntTSL 3 BASIC2.51□□□□□ -2.01
HOXD4P09016 FABP5P13-201ENST00000452144 328 ntBASIC2.51□□□□□ -2.01
HOXD4P09016 SEPT14P2-201ENST00000453405 183 ntBASIC2.51□□□□□ -2.01
HOXD4P09016 AL024497.2-201ENST00000457081 317 ntTSL 3 BASIC2.51□□□□□ -2.01
HOXD4P09016 RPS29P12-201ENST00000460178 152 ntBASIC2.51□□□□□ -2.01
HOXD4P09016 GMFBP1-201ENST00000467831 427 ntBASIC2.51□□□□□ -2.01
HOXD4P09016 AL163973.1-201ENST00000484753 577 ntBASIC2.51□□□□□ -2.01
HOXD4P09016 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC2.51□□□□□ -2.01
HOXD4P09016 RBBP4P6-201ENST00000508098 202 ntBASIC2.51□□□□□ -2.01
HOXD4P09016 TTC39CP1-201ENST00000512513 755 ntBASIC2.51□□□□□ -2.01
HOXD4P09016 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC2.51□□□□□ -2.01
HOXD4P09016 SEPT14P4-201ENST00000513445 186 ntBASIC2.51□□□□□ -2.01
HOXD4P09016 RNA5SP401-201ENST00000515920 127 ntBASIC2.51□□□□□ -2.01
HOXD4P09016 RNU6-927P-201ENST00000516199 100 ntBASIC2.51□□□□□ -2.01
HOXD4P09016 RN7SKP219-201ENST00000516825 296 ntBASIC2.51□□□□□ -2.01
HOXD4P09016 FO082796.1-201ENST00000523795 183 ntBASIC2.51□□□□□ -2.01
HOXD4P09016 RGS4-209ENST00000531057 544 ntTSL 4 BASIC2.51□□□□□ -2.01
HOXD4P09016 AC078778.1-201ENST00000547177 735 ntTSL 3 BASIC2.51□□□□□ -2.01
HOXD4P09016 AC079600.2-201ENST00000550076 130 ntBASIC2.51□□□□□ -2.01
HOXD4P09016 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC2.51□□□□□ -2.01
HOXD4P09016 MIR4703-201ENST00000577728 79 ntBASIC2.51□□□□□ -2.01
HOXD4P09016 AC008521.1-201ENST00000587471 187 ntBASIC2.51□□□□□ -2.01
HOXD4P09016 AC002545.1-201ENST00000592511 181 ntBASIC2.51□□□□□ -2.01
HOXD4P09016 AC104763.2-201ENST00000604179 382 ntBASIC2.51□□□□□ -2.01
HOXD4P09016 AC090115.4-201ENST00000609970 188 ntBASIC2.51□□□□□ -2.01
HOXD4P09016 AC012409.4-201ENST00000612923 249 ntBASIC2.51□□□□□ -2.01
HOXD4P09016 AP001486.3-201ENST00000615334 372 ntBASIC2.51□□□□□ -2.01
HOXD4P09016 AC002553.4-201ENST00000616896 331 ntBASIC2.51□□□□□ -2.01
HOXD4P09016 AC024940.5-201ENST00000622889 474 ntBASIC2.51□□□□□ -2.01
HOXD4P09016 AC215522.3-201ENST00000635602 354 ntTSL 5 BASIC2.51□□□□□ -2.01
HOXD4P09016 U6.114-201ENST00000636407 96 ntBASIC2.51□□□□□ -2.01
HOXD4P09016 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
HOXD4P09016 AC008669.1-201ENST00000565823 2178 ntBASIC2.51□□□□□ -2.01
HOXD4P09016 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC2.51□□□□□ -2.01
HOXD4P09016 AC007785.2-201ENST00000598627 1916 ntBASIC2.5□□□□□ -2.01
HOXD4P09016 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC2.5□□□□□ -2.01
HOXD4P09016 MIR26A1-201ENST00000362205 77 ntBASIC2.5□□□□□ -2.01
HOXD4P09016 RNU6-741P-201ENST00000383889 107 ntBASIC2.5□□□□□ -2.01
HOXD4P09016 Y_RNA.573-201ENST00000384763 105 ntBASIC2.5□□□□□ -2.01
HOXD4P09016 RNU6-817P-201ENST00000391083 104 ntBASIC2.5□□□□□ -2.01
HOXD4P09016 RNU2-52P-201ENST00000410680 190 ntBASIC2.5□□□□□ -2.01
HOXD4P09016 RNU6-1068P-201ENST00000410958 103 ntBASIC2.5□□□□□ -2.01
HOXD4P09016 AC079150.1-201ENST00000413043 383 ntTSL 3 BASIC2.5□□□□□ -2.01
HOXD4P09016 LINC02263-203ENST00000426240 515 ntTSL 5 BASIC2.5□□□□□ -2.01
HOXD4P09016 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC2.5□□□□□ -2.01
HOXD4P09016 AL353680.1-201ENST00000433788 337 ntTSL 3 BASIC2.5□□□□□ -2.01
HOXD4P09016 AL512844.2-201ENST00000433990 593 ntBASIC2.5□□□□□ -2.01
HOXD4P09016 HMGB1P31-201ENST00000437242 427 ntBASIC2.5□□□□□ -2.01
HOXD4P09016 Z96811.1-201ENST00000445880 108 ntBASIC2.5□□□□□ -2.01
HOXD4P09016 DPPA3P1-201ENST00000448050 469 ntBASIC2.5□□□□□ -2.01
HOXD4P09016 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC2.5□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 115.1 ms