Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 SCARNA3-201ENST00000517097 143 ntBASIC2.57□□□□□ -2
VIMP08670 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC2.57□□□□□ -2
VIMP08670 SUB1P2-201ENST00000556401 297 ntBASIC2.57□□□□□ -2
VIMP08670 LINC2194-202ENST00000567624 506 ntTSL 3 BASIC2.57□□□□□ -2
VIMP08670 SRGNP1-201ENST00000603392 451 ntBASIC2.57□□□□□ -2
VIMP08670 AC091834.1-201ENST00000614543 472 ntBASIC2.57□□□□□ -2
VIMP08670 AP001486.3-201ENST00000615334 372 ntBASIC2.57□□□□□ -2
VIMP08670 AC009509.4-201ENST00000619202 509 ntBASIC2.57□□□□□ -2
VIMP08670 AC009161.2-201ENST00000624626 138 ntBASIC2.57□□□□□ -2
VIMP08670 SEPT14P19-203ENST00000633205 211 ntBASIC2.57□□□□□ -2
VIMP08670 MIR7157-201ENST00000635801 60 ntBASIC2.57□□□□□ -2
VIMP08670 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC2.57□□□□□ -2
VIMP08670 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC2.57□□□□□ -2
VIMP08670 5S_rRNA.1-201ENST00000364415 116 ntBASIC2.56□□□□□ -2
VIMP08670 RNU6-384P-201ENST00000364900 104 ntBASIC2.56□□□□□ -2
VIMP08670 Y_RNA.359-201ENST00000365498 102 ntBASIC2.56□□□□□ -2
VIMP08670 RNU6-550P-201ENST00000391057 101 ntBASIC2.56□□□□□ -2
VIMP08670 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC2.56□□□□□ -2
VIMP08670 AC093157.2-201ENST00000414686 671 ntTSL 5 BASIC2.56□□□□□ -2
VIMP08670 RPLP0P7-201ENST00000416050 667 ntBASIC2.56□□□□□ -2
VIMP08670 RPL30P4-201ENST00000429309 333 ntBASIC2.56□□□□□ -2
VIMP08670 OFD1P4Y-201ENST00000455273 1179 ntBASIC2.56□□□□□ -2
VIMP08670 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC2.56□□□□□ -2
VIMP08670 AC022364.2-201ENST00000457963 554 ntBASIC2.56□□□□□ -2
VIMP08670 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC2.56□□□□□ -2
VIMP08670 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC2.56□□□□□ -2
VIMP08670 AC079140.3-201ENST00000511111 550 ntBASIC2.56□□□□□ -2
VIMP08670 LINC01256-201ENST00000513270 508 ntTSL 2 BASIC2.56□□□□□ -2
VIMP08670 SNORA25.11-201ENST00000515935 105 ntBASIC2.56□□□□□ -2
VIMP08670 IGLV3-17-201ENST00000519099 244 ntBASIC2.56□□□□□ -2
VIMP08670 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC2.56□□□□□ -2
VIMP08670 OR5AQ1P-201ENST00000527596 927 ntBASIC2.56□□□□□ -2
VIMP08670 AP002963.1-201ENST00000530590 184 ntBASIC2.56□□□□□ -2
VIMP08670 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC2.56□□□□□ -2
VIMP08670 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC2.56□□□□□ -2
VIMP08670 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC2.56□□□□□ -2
VIMP08670 AC092656.1-203ENST00000624134 423 ntBASIC2.56□□□□□ -2
VIMP08670 AL358154.1-201ENST00000627075 444 ntTSL 3 BASIC2.56□□□□□ -2
VIMP08670 SRP54-214ENST00000630962 162 ntTSL 5 BASIC2.56□□□□□ -2
VIMP08670 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC2.56□□□□□ -2
VIMP08670 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC2.55□□□□□ -2
VIMP08670 RNU6-858P-201ENST00000362436 107 ntBASIC2.55□□□□□ -2
VIMP08670 RNU4-48P-201ENST00000365559 182 ntBASIC2.55□□□□□ -2
VIMP08670 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC2.55□□□□□ -2
VIMP08670 RNU6-1029P-201ENST00000384109 107 ntBASIC2.55□□□□□ -2
VIMP08670 RNU1-52P-201ENST00000384190 164 ntBASIC2.55□□□□□ -2
VIMP08670 RNU6-72P-201ENST00000384285 79 ntBASIC2.55□□□□□ -2
VIMP08670 TIMM9-202ENST00000395159 1336 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
VIMP08670 RNU6ATAC10P-201ENST00000408635 111 ntBASIC2.55□□□□□ -2
VIMP08670 RNU2-9P-201ENST00000410194 145 ntBASIC2.55□□□□□ -2
VIMP08670 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
VIMP08670 CDK8P2-201ENST00000415020 547 ntBASIC2.55□□□□□ -2
VIMP08670 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC2.55□□□□□ -2
VIMP08670 MORF4L1P6-201ENST00000418771 268 ntBASIC2.55□□□□□ -2
VIMP08670 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC2.55□□□□□ -2
VIMP08670 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC2.55□□□□□ -2
VIMP08670 AC023590.1-204ENST00000434023 431 ntTSL 5 BASIC2.55□□□□□ -2
VIMP08670 MTND2P22-201ENST00000444325 1033 ntBASIC2.55□□□□□ -2
VIMP08670 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC2.55□□□□□ -2
VIMP08670 RNU7-26P-201ENST00000458980 63 ntBASIC2.55□□□□□ -2
VIMP08670 AC093523.1-201ENST00000503268 499 ntTSL 3 BASIC2.55□□□□□ -2
VIMP08670 RNU1-86P-201ENST00000516108 154 ntBASIC2.55□□□□□ -2
VIMP08670 RNU1-107P-201ENST00000516617 154 ntBASIC2.55□□□□□ -2
VIMP08670 RNA5SP503-201ENST00000517047 117 ntBASIC2.55□□□□□ -2
VIMP08670 AC010186.2-204ENST00000537668 439 ntBASIC2.55□□□□□ -2
VIMP08670 RGS13-204ENST00000543215 1518 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
VIMP08670 AC087260.1-201ENST00000546118 401 ntTSL 5 BASIC2.55□□□□□ -2
VIMP08670 PSMA4-204ENST00000558094 651 ntTSL 3 BASIC2.55□□□□□ -2
VIMP08670 MIR5692A1-201ENST00000580523 69 ntBASIC2.55□□□□□ -2
VIMP08670 AC073648.5-201ENST00000603502 305 ntBASIC2.55□□□□□ -2
VIMP08670 AL670379.10-201ENST00000604330 253 ntBASIC2.55□□□□□ -2
VIMP08670 AL670379.9-201ENST00000605428 253 ntBASIC2.55□□□□□ -2
VIMP08670 AC245884.12-201ENST00000615364 59 ntBASIC2.55□□□□□ -2
VIMP08670 AC138627.2-201ENST00000624202 601 ntBASIC2.55□□□□□ -2
VIMP08670 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC2.55□□□□□ -2
VIMP08670 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC2.55□□□□□ -2
VIMP08670 MIR34A-201ENST00000385130 110 ntBASIC2.54□□□□□ -2
VIMP08670 SNORA48.7-201ENST00000391302 135 ntBASIC2.54□□□□□ -2
VIMP08670 AL138827.1-201ENST00000402666 306 ntBASIC2.54□□□□□ -2
VIMP08670 PGBD4P6-201ENST00000421501 610 ntBASIC2.54□□□□□ -2
VIMP08670 AL162726.4-201ENST00000422010 673 ntTSL 5 BASIC2.54□□□□□ -2
VIMP08670 BX276092.3-201ENST00000424182 230 ntBASIC2.54□□□□□ -2
VIMP08670 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC2.54□□□□□ -2
VIMP08670 HIGD1AP2-201ENST00000446367 280 ntBASIC2.54□□□□□ -2
VIMP08670 AC006512.1-201ENST00000468816 291 ntBASIC2.54□□□□□ -2
VIMP08670 RPL36AP48-201ENST00000485521 314 ntBASIC2.54□□□□□ -2
VIMP08670 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC2.54□□□□□ -2
VIMP08670 RNA5SP112-201ENST00000515937 99 ntBASIC2.54□□□□□ -2
VIMP08670 RN7SKP298-201ENST00000515950 94 ntBASIC2.54□□□□□ -2
VIMP08670 AC087241.2-201ENST00000535801 324 ntBASIC2.54□□□□□ -2
VIMP08670 POC1B-211ENST00000549504 581 ntTSL 5 BASIC2.54□□□□□ -2
VIMP08670 AC121758.2-201ENST00000553271 193 ntBASIC2.54□□□□□ -2
VIMP08670 AC023824.2-201ENST00000566185 400 ntBASIC2.54□□□□□ -2
VIMP08670 PIGPP4-201ENST00000584447 307 ntBASIC2.54□□□□□ -2
VIMP08670 RPS15AP11-201ENST00000594193 385 ntBASIC2.54□□□□□ -2
VIMP08670 AC073539.2-201ENST00000597113 165 ntBASIC2.54□□□□□ -2
VIMP08670 AC025449.1-201ENST00000603896 529 ntBASIC2.54□□□□□ -2
VIMP08670 YPEL5P2-201ENST00000605553 359 ntBASIC2.54□□□□□ -2
VIMP08670 HMGB1P24-202ENST00000615653 685 ntBASIC2.54□□□□□ -2
VIMP08670 AC136475.10-201ENST00000620253 385 ntBASIC2.54□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 105.4 ms