Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 RGS13-201ENST00000391995 1505 ntAPPRIS P1 TSL 1 (best) BASIC1.97□□□□□ -2.09
CTDNEP1O95476 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.97□□□□□ -2.09
CTDNEP1O95476 RNU5E-1-201ENST00000362477 120 ntBASIC1.97□□□□□ -2.09
CTDNEP1O95476 U3.4-201ENST00000363352 213 ntBASIC1.97□□□□□ -2.09
CTDNEP1O95476 SMIM11P1-201ENST00000369586 178 ntBASIC1.97□□□□□ -2.09
CTDNEP1O95476 MIR583-201ENST00000384846 75 ntBASIC1.97□□□□□ -2.09
CTDNEP1O95476 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC1.97□□□□□ -2.09
CTDNEP1O95476 NDUFS5P1-201ENST00000405668 289 ntBASIC1.97□□□□□ -2.09
CTDNEP1O95476 MIR1289-2-201ENST00000408360 111 ntBASIC1.97□□□□□ -2.09
CTDNEP1O95476 BTF3L4P3-201ENST00000418879 476 ntBASIC1.97□□□□□ -2.09
CTDNEP1O95476 RPS15AP12-201ENST00000419498 388 ntBASIC1.97□□□□□ -2.09
CTDNEP1O95476 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC1.97□□□□□ -2.09
CTDNEP1O95476 GPM6BP3-201ENST00000442797 145 ntBASIC1.97□□□□□ -2.09
CTDNEP1O95476 RGS5-217ENST00000451759 835 ntTSL 3 BASIC1.97□□□□□ -2.09
CTDNEP1O95476 SCEL-AS1-201ENST00000456280 493 ntTSL 3 BASIC1.97□□□□□ -2.09
CTDNEP1O95476 AC092620.2-201ENST00000458007 744 ntTSL 2 BASIC1.97□□□□□ -2.09
CTDNEP1O95476 snoU13.15-201ENST00000459407 104 ntBASIC1.97□□□□□ -2.09
CTDNEP1O95476 RPL21P99-201ENST00000480369 423 ntBASIC1.97□□□□□ -2.09
CTDNEP1O95476 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC1.97□□□□□ -2.09
CTDNEP1O95476 VCAN-AS1-201ENST00000512090 424 ntTSL 3 BASIC1.97□□□□□ -2.09
CTDNEP1O95476 AC022447.1-201ENST00000515358 464 ntBASIC1.97□□□□□ -2.09
CTDNEP1O95476 RNU5F-8P-201ENST00000515941 111 ntBASIC1.97□□□□□ -2.09
CTDNEP1O95476 RNU6ATAC13P-201ENST00000516152 131 ntBASIC1.97□□□□□ -2.09
CTDNEP1O95476 RNA5SP337-201ENST00000517007 109 ntBASIC1.97□□□□□ -2.09
CTDNEP1O95476 RNU2-46P-201ENST00000517038 113 ntBASIC1.97□□□□□ -2.09
CTDNEP1O95476 RPL21P5-201ENST00000554662 472 ntBASIC1.97□□□□□ -2.09
CTDNEP1O95476 MIR3618-201ENST00000580330 88 ntBASIC1.97□□□□□ -2.09
CTDNEP1O95476 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC1.97□□□□□ -2.09
CTDNEP1O95476 AC110760.3-201ENST00000598794 467 ntBASIC1.97□□□□□ -2.09
CTDNEP1O95476 Z99497.2-201ENST00000603634 310 ntBASIC1.97□□□□□ -2.09
CTDNEP1O95476 Z94722.1-201ENST00000604328 474 ntBASIC1.97□□□□□ -2.09
CTDNEP1O95476 AC007363.1-201ENST00000604736 620 ntBASIC1.97□□□□□ -2.09
CTDNEP1O95476 AC121334.2-201ENST00000605387 271 ntBASIC1.97□□□□□ -2.09
CTDNEP1O95476 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC1.97□□□□□ -2.09
CTDNEP1O95476 AC080128.1-201ENST00000474389 1917 ntBASIC1.96□□□□□ -2.1
CTDNEP1O95476 EDDM3A-201ENST00000326842 927 ntAPPRIS P1 TSL 1 (best) BASIC1.96□□□□□ -2.1
CTDNEP1O95476 RNU5E-6P-201ENST00000365574 115 ntBASIC1.96□□□□□ -2.1
CTDNEP1O95476 CRISP3-203ENST00000371159 872 ntAPPRIS ALT2 TSL 5 BASIC1.96□□□□□ -2.1
CTDNEP1O95476 C6orf62-201ENST00000378102 741 ntTSL 5 BASIC1.96□□□□□ -2.1
CTDNEP1O95476 RNU6-140P-201ENST00000384566 108 ntBASIC1.96□□□□□ -2.1
CTDNEP1O95476 ZNF705D-201ENST00000400078 925 ntAPPRIS P1 TSL 2 BASIC1.96□□□□□ -2.1
CTDNEP1O95476 FCF1P10-201ENST00000407590 479 ntBASIC1.96□□□□□ -2.1
CTDNEP1O95476 AP001136.1-201ENST00000425058 635 ntTSL 2 BASIC1.96□□□□□ -2.1
CTDNEP1O95476 AL162725.2-201ENST00000430545 748 ntTSL 5 BASIC1.96□□□□□ -2.1
CTDNEP1O95476 MTND6P13-201ENST00000443510 523 ntBASIC1.96□□□□□ -2.1
CTDNEP1O95476 AC104688.1-201ENST00000447158 419 ntTSL 3 BASIC1.96□□□□□ -2.1
CTDNEP1O95476 PSPHP1-201ENST00000450062 261 ntBASIC1.96□□□□□ -2.1
CTDNEP1O95476 CECR9-201ENST00000453421 199 ntBASIC1.96□□□□□ -2.1
CTDNEP1O95476 MTND1P12-201ENST00000455231 147 ntBASIC1.96□□□□□ -2.1
CTDNEP1O95476 LINC00894-208ENST00000455777 284 ntTSL 2 BASIC1.96□□□□□ -2.1
CTDNEP1O95476 SNRPGP9-201ENST00000456025 225 ntBASIC1.96□□□□□ -2.1
CTDNEP1O95476 AC117462.1-201ENST00000461186 554 ntTSL 4 BASIC1.96□□□□□ -2.1
CTDNEP1O95476 MTND1P3-201ENST00000484956 952 ntBASIC1.96□□□□□ -2.1
CTDNEP1O95476 AC010587.1-201ENST00000505809 469 ntBASIC1.96□□□□□ -2.1
CTDNEP1O95476 APELA-204ENST00000515275 551 ntAPPRIS P1 TSL 3 BASIC1.96□□□□□ -2.1
CTDNEP1O95476 RNU6ATAC12P-201ENST00000516542 115 ntBASIC1.96□□□□□ -2.1
CTDNEP1O95476 RNU6-1220P-201ENST00000517126 108 ntBASIC1.96□□□□□ -2.1
CTDNEP1O95476 RNA5SP291-201ENST00000517222 105 ntBASIC1.96□□□□□ -2.1
CTDNEP1O95476 ZNF706-202ENST00000517844 604 ntAPPRIS P1 TSL 3 BASIC1.96□□□□□ -2.1
CTDNEP1O95476 AC103957.1-202ENST00000519814 735 ntTSL 3 BASIC1.96□□□□□ -2.1
CTDNEP1O95476 CYCSP26-201ENST00000534107 320 ntBASIC1.96□□□□□ -2.1
CTDNEP1O95476 VBP1-203ENST00000535916 944 ntTSL 2 BASIC1.96□□□□□ -2.1
CTDNEP1O95476 AC087318.1-201ENST00000536786 389 ntTSL 3 BASIC1.96□□□□□ -2.1
CTDNEP1O95476 CBX3P4-201ENST00000538909 354 ntBASIC1.96□□□□□ -2.1
CTDNEP1O95476 AC027807.1-201ENST00000559921 996 ntBASIC1.96□□□□□ -2.1
CTDNEP1O95476 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC1.96□□□□□ -2.1
CTDNEP1O95476 AL513324.1-201ENST00000575236 632 ntTSL 5 BASIC1.96□□□□□ -2.1
CTDNEP1O95476 AP005136.1-201ENST00000579765 429 ntBASIC1.96□□□□□ -2.1
CTDNEP1O95476 AC098826.3-201ENST00000603823 466 ntBASIC1.96□□□□□ -2.1
CTDNEP1O95476 AL358072.1-201ENST00000604156 575 ntBASIC1.96□□□□□ -2.1
CTDNEP1O95476 AL161798.1-201ENST00000604630 131 ntBASIC1.96□□□□□ -2.1
CTDNEP1O95476 RNU6-87P-201ENST00000607561 108 ntBASIC1.96□□□□□ -2.1
CTDNEP1O95476 AL451064.1-201ENST00000607718 471 ntBASIC1.96□□□□□ -2.1
CTDNEP1O95476 FTX_3.1-201ENST00000610451 147 ntBASIC1.96□□□□□ -2.1
CTDNEP1O95476 DPY19L1-208ENST00000612226 607 ntTSL 1 (best) BASIC1.96□□□□□ -2.1
CTDNEP1O95476 MALAT1-206ENST00000612781 234 ntTSL 3 BASIC1.96□□□□□ -2.1
CTDNEP1O95476 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC1.96□□□□□ -2.1
CTDNEP1O95476 AC025048.6-202ENST00000627667 438 ntBASIC1.96□□□□□ -2.1
CTDNEP1O95476 MIR3974-201ENST00000637126 96 ntBASIC1.96□□□□□ -2.1
CTDNEP1O95476 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC1.96□□□□□ -2.1
CTDNEP1O95476 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC1.96□□□□□ -2.1
CTDNEP1O95476 AK9-203ENST00000368948 2478 ntTSL 5 BASIC1.96□□□□□ -2.1
CTDNEP1O95476 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC1.95□□□□□ -2.1
CTDNEP1O95476 SLC25A46-206ENST00000509432 1596 ntTSL 2 BASIC1.95□□□□□ -2.1
CTDNEP1O95476 RNU6-1167P-201ENST00000363227 94 ntBASIC1.95□□□□□ -2.1
CTDNEP1O95476 U8.3-201ENST00000363321 132 ntBASIC1.95□□□□□ -2.1
CTDNEP1O95476 RNU6-188P-201ENST00000364207 107 ntBASIC1.95□□□□□ -2.1
CTDNEP1O95476 RNU6-39P-201ENST00000384344 107 ntBASIC1.95□□□□□ -2.1
CTDNEP1O95476 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC1.95□□□□□ -2.1
CTDNEP1O95476 Y_RNA.598-201ENST00000410480 95 ntBASIC1.95□□□□□ -2.1
CTDNEP1O95476 RNU6-195P-201ENST00000411352 109 ntBASIC1.95□□□□□ -2.1
CTDNEP1O95476 ZNF90P2-204ENST00000419323 1075 ntBASIC1.95□□□□□ -2.1
CTDNEP1O95476 AC090960.1-201ENST00000421072 306 ntBASIC1.95□□□□□ -2.1
CTDNEP1O95476 OOSP1P1-201ENST00000423265 274 ntBASIC1.95□□□□□ -2.1
CTDNEP1O95476 ZNF863P-201ENST00000426746 417 ntBASIC1.95□□□□□ -2.1
CTDNEP1O95476 ELOCP14-201ENST00000428070 331 ntBASIC1.95□□□□□ -2.1
CTDNEP1O95476 HTR2A-AS1-201ENST00000430913 429 ntTSL 3 BASIC1.95□□□□□ -2.1
CTDNEP1O95476 AL162734.1-201ENST00000432858 157 ntTSL 5 BASIC1.95□□□□□ -2.1
CTDNEP1O95476 AC104850.1-201ENST00000435940 476 ntBASIC1.95□□□□□ -2.1
CTDNEP1O95476 HMGB3P12-201ENST00000438745 556 ntBASIC1.95□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 117.3 ms