Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC3.51□□□□□ -1.85
VPS4BO75351 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
VPS4BO75351 TLR10-206ENST00000508334 2616 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
VPS4BO75351 AL672296.1-201ENST00000427780 2158 ntBASIC3.51□□□□□ -1.85
VPS4BO75351 Y_RNA.187-201ENST00000363918 113 ntBASIC3.51□□□□□ -1.85
VPS4BO75351 SNORD14B-201ENST00000364533 90 ntBASIC3.51□□□□□ -1.85
VPS4BO75351 RNU6-1329P-201ENST00000365664 107 ntBASIC3.51□□□□□ -1.85
VPS4BO75351 Y_RNA.395-201ENST00000383945 109 ntBASIC3.51□□□□□ -1.85
VPS4BO75351 RNU6-217P-201ENST00000384164 104 ntBASIC3.51□□□□□ -1.85
VPS4BO75351 AC245054.2-201ENST00000415639 319 ntBASIC3.51□□□□□ -1.85
VPS4BO75351 HMGB1P9-201ENST00000429856 646 ntBASIC3.51□□□□□ -1.85
VPS4BO75351 SETP5-201ENST00000437270 562 ntBASIC3.51□□□□□ -1.85
VPS4BO75351 HIGD1AP11-201ENST00000438361 280 ntBASIC3.51□□□□□ -1.85
VPS4BO75351 RN7SL601P-201ENST00000471221 293 ntBASIC3.51□□□□□ -1.85
VPS4BO75351 AC099520.1-202ENST00000503650 777 ntTSL 3 BASIC3.51□□□□□ -1.85
VPS4BO75351 AC116337.1-201ENST00000509680 687 ntBASIC3.51□□□□□ -1.85
VPS4BO75351 AC096745.1-201ENST00000509945 370 ntBASIC3.51□□□□□ -1.85
VPS4BO75351 RNU6-1170P-201ENST00000515974 106 ntBASIC3.51□□□□□ -1.85
VPS4BO75351 RNA5SP165-201ENST00000517142 115 ntBASIC3.51□□□□□ -1.85
VPS4BO75351 AC025755.1-201ENST00000521306 278 ntBASIC3.51□□□□□ -1.85
VPS4BO75351 AC025423.5-201ENST00000550230 219 ntBASIC3.51□□□□□ -1.85
VPS4BO75351 MIR5187-201ENST00000583479 76 ntBASIC3.51□□□□□ -1.85
VPS4BO75351 MIR3922-201ENST00000585192 84 ntBASIC3.51□□□□□ -1.85
VPS4BO75351 AC004805.2-201ENST00000605382 482 ntBASIC3.51□□□□□ -1.85
VPS4BO75351 RNU6ATAC35P-201ENST00000609276 444 ntBASIC3.51□□□□□ -1.85
VPS4BO75351 Y_RNA.812-201ENST00000610788 101 ntBASIC3.51□□□□□ -1.85
VPS4BO75351 Y_RNA.784-201ENST00000613803 101 ntBASIC3.51□□□□□ -1.85
VPS4BO75351 AC084781.2-201ENST00000615568 161 ntBASIC3.51□□□□□ -1.85
VPS4BO75351 MIR8058-201ENST00000615737 89 ntBASIC3.51□□□□□ -1.85
VPS4BO75351 Y_RNA.787-201ENST00000616522 101 ntBASIC3.51□□□□□ -1.85
VPS4BO75351 Y_RNA.780-201ENST00000617336 101 ntBASIC3.51□□□□□ -1.85
VPS4BO75351 Y_RNA.801-201ENST00000619005 101 ntBASIC3.51□□□□□ -1.85
VPS4BO75351 AC010378.1-201ENST00000619270 362 ntBASIC3.51□□□□□ -1.85
VPS4BO75351 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC3.51□□□□□ -1.85
VPS4BO75351 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
VPS4BO75351 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
VPS4BO75351 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
VPS4BO75351 AC068647.1-201ENST00000489539 2265 ntBASIC3.51□□□□□ -1.85
VPS4BO75351 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
VPS4BO75351 AC073073.2-201ENST00000609827 2578 ntBASIC3.51□□□□□ -1.85
VPS4BO75351 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
VPS4BO75351 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
VPS4BO75351 AL079305.1-201ENST00000623159 3008 ntBASIC3.5□□□□□ -1.85
VPS4BO75351 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC3.5□□□□□ -1.85
VPS4BO75351 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC3.5□□□□□ -1.85
VPS4BO75351 SNORA63-201ENST00000363450 132 ntBASIC3.5□□□□□ -1.85
VPS4BO75351 RNA5SP267-201ENST00000364893 126 ntBASIC3.5□□□□□ -1.85
VPS4BO75351 RNU6-601P-201ENST00000384540 107 ntBASIC3.5□□□□□ -1.85
VPS4BO75351 RNU2-68P-201ENST00000410878 191 ntBASIC3.5□□□□□ -1.85
VPS4BO75351 RNU6-55P-201ENST00000411092 107 ntBASIC3.5□□□□□ -1.85
VPS4BO75351 Y_RNA.623-201ENST00000411128 95 ntBASIC3.5□□□□□ -1.85
VPS4BO75351 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC3.5□□□□□ -1.85
VPS4BO75351 AL096701.2-201ENST00000416920 238 ntBASIC3.5□□□□□ -1.85
VPS4BO75351 YPEL5P1-201ENST00000419731 367 ntBASIC3.5□□□□□ -1.85
VPS4BO75351 AL627311.1-201ENST00000431514 115 ntBASIC3.5□□□□□ -1.85
VPS4BO75351 AC018495.1-201ENST00000440266 452 ntTSL 3 BASIC3.5□□□□□ -1.85
VPS4BO75351 RPS3AP46-201ENST00000448352 682 ntBASIC3.5□□□□□ -1.85
VPS4BO75351 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC3.5□□□□□ -1.85
VPS4BO75351 BX510359.1-201ENST00000456973 237 ntBASIC3.5□□□□□ -1.85
VPS4BO75351 AC139453.3-201ENST00000493276 369 ntBASIC3.5□□□□□ -1.85
VPS4BO75351 RNU6-1016P-201ENST00000516689 94 ntBASIC3.5□□□□□ -1.85
VPS4BO75351 SCARNA14-201ENST00000516903 136 ntBASIC3.5□□□□□ -1.85
VPS4BO75351 RNU6-703P-201ENST00000516946 107 ntBASIC3.5□□□□□ -1.85
VPS4BO75351 RN7SKP57-201ENST00000517248 293 ntBASIC3.5□□□□□ -1.85
VPS4BO75351 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC3.5□□□□□ -1.85
VPS4BO75351 AP006245.1-201ENST00000522549 120 ntBASIC3.5□□□□□ -1.85
VPS4BO75351 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC3.5□□□□□ -1.85
VPS4BO75351 MIR5690-201ENST00000583739 73 ntBASIC3.5□□□□□ -1.85
VPS4BO75351 CYP2C61P-201ENST00000604072 290 ntBASIC3.5□□□□□ -1.85
VPS4BO75351 AC006077.1-201ENST00000604746 343 ntBASIC3.5□□□□□ -1.85
VPS4BO75351 AL080274.1-201ENST00000605565 220 ntBASIC3.5□□□□□ -1.85
VPS4BO75351 RNU6-85P-201ENST00000605989 107 ntBASIC3.5□□□□□ -1.85
VPS4BO75351 AL133215.3-201ENST00000609801 448 ntBASIC3.5□□□□□ -1.85
VPS4BO75351 DAOA-AS1_2.1-201ENST00000614829 187 ntBASIC3.5□□□□□ -1.85
VPS4BO75351 AC090971.5-201ENST00000621102 293 ntBASIC3.5□□□□□ -1.85
VPS4BO75351 AC099506.2-201ENST00000623074 221 ntBASIC3.5□□□□□ -1.85
VPS4BO75351 MIR3651-201ENST00000630427 90 ntBASIC3.5□□□□□ -1.85
VPS4BO75351 U2.21-201ENST00000637295 81 ntBASIC3.5□□□□□ -1.85
VPS4BO75351 AC093010.3-201ENST00000570269 15214 ntBASIC3.5□□□□□ -1.85
VPS4BO75351 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC3.5□□□□□ -1.85
VPS4BO75351 KIAA1841-202ENST00000356719 2149 ntTSL 5 BASIC3.5□□□□□ -1.85
VPS4BO75351 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC3.5□□□□□ -1.85
VPS4BO75351 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
VPS4BO75351 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC3.49□□□□□ -1.85
VPS4BO75351 AC087521.2-201ENST00000499066 2190 ntTSL 2 BASIC3.49□□□□□ -1.85
VPS4BO75351 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
VPS4BO75351 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC3.49□□□□□ -1.85
VPS4BO75351 SNORD62.1-201ENST00000362541 86 ntBASIC3.49□□□□□ -1.85
VPS4BO75351 Y_RNA.128-201ENST00000363391 112 ntBASIC3.49□□□□□ -1.85
VPS4BO75351 RNU6-166P-201ENST00000384371 107 ntBASIC3.49□□□□□ -1.85
VPS4BO75351 snosnR66.1-201ENST00000391095 99 ntBASIC3.49□□□□□ -1.85
VPS4BO75351 AC106873.1-201ENST00000420664 459 ntTSL 3 BASIC3.49□□□□□ -1.85
VPS4BO75351 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC3.49□□□□□ -1.85
VPS4BO75351 AL118496.2-201ENST00000448300 230 ntBASIC3.49□□□□□ -1.85
VPS4BO75351 DCLRE1CP1-201ENST00000454630 470 ntBASIC3.49□□□□□ -1.85
VPS4BO75351 RPS23P3-201ENST00000470993 430 ntBASIC3.49□□□□□ -1.85
VPS4BO75351 AC027575.1-201ENST00000481064 460 ntBASIC3.49□□□□□ -1.85
VPS4BO75351 AC026782.1-201ENST00000512952 449 ntBASIC3.49□□□□□ -1.85
VPS4BO75351 RNU1-103P-201ENST00000516502 125 ntBASIC3.49□□□□□ -1.85
VPS4BO75351 AC025871.1-201ENST00000523935 443 ntTSL 2 BASIC3.49□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 129.7 ms