Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 RNU6-821P-201ENST00000390995 107 ntBASIC0.44□□□□□ -2.34
CCDC88BA6NC98 RNA5SP25-201ENST00000410815 110 ntBASIC0.44□□□□□ -2.34
CCDC88BA6NC98 LINC01967-202ENST00000437506 515 ntTSL 5 BASIC0.44□□□□□ -2.34
CCDC88BA6NC98 MTND4P6-201ENST00000438297 472 ntBASIC0.44□□□□□ -2.34
CCDC88BA6NC98 AC020559.1-201ENST00000444229 583 ntTSL 2 BASIC0.44□□□□□ -2.34
CCDC88BA6NC98 ZNF736P6Y-201ENST00000447526 1213 ntBASIC0.44□□□□□ -2.34
CCDC88BA6NC98 MRPS17P3-201ENST00000465453 385 ntBASIC0.44□□□□□ -2.34
CCDC88BA6NC98 AC010900.2-201ENST00000604508 210 ntBASIC0.44□□□□□ -2.34
CCDC88BA6NC98 AC134026.1-201ENST00000623249 2239 ntBASIC0.44□□□□□ -2.34
CCDC88BA6NC98 TAF9BP2-201ENST00000400856 499 ntBASIC0.43□□□□□ -2.34
CCDC88BA6NC98 DSCR4-IT1-201ENST00000417138 424 ntTSL 5 BASIC0.43□□□□□ -2.34
CCDC88BA6NC98 AC006041.1-201ENST00000425322 328 ntTSL 3 BASIC0.43□□□□□ -2.34
CCDC88BA6NC98 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC0.43□□□□□ -2.34
CCDC88BA6NC98 NDUFA5P10-201ENST00000432147 357 ntBASIC0.43□□□□□ -2.34
CCDC88BA6NC98 MIR4435-2HG-206ENST00000432818 572 ntTSL 5 BASIC0.43□□□□□ -2.34
CCDC88BA6NC98 TRBVB-201ENST00000477100 408 ntBASIC0.43□□□□□ -2.34
CCDC88BA6NC98 SNORA31.6-201ENST00000516241 130 ntBASIC0.43□□□□□ -2.34
CCDC88BA6NC98 AL590705.4-201ENST00000532209 134 ntBASIC0.43□□□□□ -2.34
CCDC88BA6NC98 POLR2KP1-201ENST00000553226 168 ntBASIC0.43□□□□□ -2.34
CCDC88BA6NC98 AL450442.1-201ENST00000554042 854 ntTSL 1 (best) BASIC0.43□□□□□ -2.34
CCDC88BA6NC98 AC008751.2-201ENST00000597885 980 ntBASIC0.43□□□□□ -2.34
CCDC88BA6NC98 AC126177.8-201ENST00000618339 1015 ntBASIC0.43□□□□□ -2.34
CCDC88BA6NC98 MIR5739-201ENST00000619803 80 ntBASIC0.43□□□□□ -2.34
CCDC88BA6NC98 MIR8065-201ENST00000620577 100 ntBASIC0.43□□□□□ -2.34
CCDC88BA6NC98 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC0.43□□□□□ -2.34
CCDC88BA6NC98 AC099654.5-201ENST00000636479 350 ntBASIC0.43□□□□□ -2.34
CCDC88BA6NC98 AC138393.1-203ENST00000327086 343 ntBASIC0.42□□□□□ -2.34
CCDC88BA6NC98 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC0.42□□□□□ -2.34
CCDC88BA6NC98 MIR561-201ENST00000385216 97 ntBASIC0.42□□□□□ -2.34
CCDC88BA6NC98 MIR1290-201ENST00000408735 78 ntBASIC0.42□□□□□ -2.34
CCDC88BA6NC98 RNU2-49P-201ENST00000410666 184 ntBASIC0.42□□□□□ -2.34
CCDC88BA6NC98 AC009299.3-203ENST00000435692 1096 ntTSL 5 BASIC0.42□□□□□ -2.34
CCDC88BA6NC98 SNORD116-28-201ENST00000516123 91 ntBASIC0.42□□□□□ -2.34
CCDC88BA6NC98 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC0.42□□□□□ -2.34
CCDC88BA6NC98 AC002400.1-201ENST00000569310 726 ntBASIC0.42□□□□□ -2.34
CCDC88BA6NC98 MIR338-201ENST00000636369 67 ntBASIC0.42□□□□□ -2.34
CCDC88BA6NC98 DSTNP4-201ENST00000399472 474 ntBASIC0.41□□□□□ -2.34
CCDC88BA6NC98 RPS26P55-201ENST00000471178 356 ntBASIC0.41□□□□□ -2.34
CCDC88BA6NC98 AC012613.1-201ENST00000522685 387 ntTSL 2 BASIC0.41□□□□□ -2.34
CCDC88BA6NC98 AP003034.1-201ENST00000534621 422 ntBASIC0.41□□□□□ -2.34
CCDC88BA6NC98 MIR5589-201ENST00000579442 60 ntBASIC0.41□□□□□ -2.34
CCDC88BA6NC98 VN1R82P-201ENST00000601481 356 ntBASIC0.41□□□□□ -2.34
CCDC88BA6NC98 MTND4LP5-201ENST00000605152 292 ntBASIC0.41□□□□□ -2.34
CCDC88BA6NC98 AL121652.1-201ENST00000608851 448 ntBASIC0.41□□□□□ -2.34
CCDC88BA6NC98 AC008498.1-201ENST00000613012 531 ntBASIC0.41□□□□□ -2.34
CCDC88BA6NC98 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC0.41□□□□□ -2.34
CCDC88BA6NC98 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC0.41□□□□□ -2.34
CCDC88BA6NC98 MIR1265-201ENST00000408444 86 ntBASIC0.41□□□□□ -2.34
CCDC88BA6NC98 RPL21P24-201ENST00000413752 448 ntBASIC0.41□□□□□ -2.34
CCDC88BA6NC98 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC0.41□□□□□ -2.34
CCDC88BA6NC98 AL160275.3-201ENST00000423876 471 ntBASIC0.41□□□□□ -2.34
CCDC88BA6NC98 ZNF863P-201ENST00000426746 417 ntBASIC0.41□□□□□ -2.34
CCDC88BA6NC98 MTND2P19-201ENST00000449129 1012 ntBASIC0.41□□□□□ -2.34
CCDC88BA6NC98 BUD31P2-201ENST00000449374 300 ntBASIC0.41□□□□□ -2.34
CCDC88BA6NC98 AL353691.1-201ENST00000451332 387 ntBASIC0.41□□□□□ -2.34
CCDC88BA6NC98 AC087477.1-201ENST00000465747 340 ntBASIC0.41□□□□□ -2.34
CCDC88BA6NC98 AC114982.1-201ENST00000469402 321 ntBASIC0.41□□□□□ -2.34
CCDC88BA6NC98 AC008562.1-201ENST00000521763 330 ntBASIC0.41□□□□□ -2.34
CCDC88BA6NC98 AC090124.2-201ENST00000527727 563 ntTSL 4 BASIC0.41□□□□□ -2.34
CCDC88BA6NC98 MIR3921-201ENST00000577308 85 ntBASIC0.41□□□□□ -2.34
CCDC88BA6NC98 MTND4P8-201ENST00000514997 1362 ntBASIC0.4□□□□□ -2.35
CCDC88BA6NC98 SNORD115-3-201ENST00000363100 82 ntBASIC0.4□□□□□ -2.35
CCDC88BA6NC98 Y_RNA.476-201ENST00000384347 108 ntBASIC0.4□□□□□ -2.35
CCDC88BA6NC98 RNU11-3P-201ENST00000391111 133 ntBASIC0.4□□□□□ -2.35
CCDC88BA6NC98 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC0.4□□□□□ -2.35
CCDC88BA6NC98 AC010099.3-201ENST00000423896 409 ntBASIC0.4□□□□□ -2.35
CCDC88BA6NC98 AL157786.1-206ENST00000424422 551 ntTSL 3 BASIC0.4□□□□□ -2.35
CCDC88BA6NC98 C1DP1-201ENST00000426049 402 ntBASIC0.4□□□□□ -2.35
CCDC88BA6NC98 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC0.4□□□□□ -2.35
CCDC88BA6NC98 BLNK-209ENST00000495266 440 ntTSL 5 BASIC0.4□□□□□ -2.35
CCDC88BA6NC98 TRBVA-201ENST00000498804 316 ntBASIC0.4□□□□□ -2.35
CCDC88BA6NC98 LINC00492-201ENST00000504436 593 ntTSL 3 BASIC0.4□□□□□ -2.35
CCDC88BA6NC98 AC093766.1-202ENST00000513400 718 ntTSL 3 BASIC0.4□□□□□ -2.35
CCDC88BA6NC98 DEFB108D-201ENST00000527787 222 ntBASIC0.4□□□□□ -2.35
CCDC88BA6NC98 MIR5190-201ENST00000581537 80 ntBASIC0.4□□□□□ -2.35
CCDC88BA6NC98 BNIP3P16-201ENST00000589779 534 ntBASIC0.4□□□□□ -2.35
CCDC88BA6NC98 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC0.4□□□□□ -2.35
CCDC88BA6NC98 AC073569.3-201ENST00000619055 682 ntBASIC0.4□□□□□ -2.35
CCDC88BA6NC98 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC0.4□□□□□ -2.35
CCDC88BA6NC98 Y_RNA.167-201ENST00000363735 109 ntBASIC0.39□□□□□ -2.35
CCDC88BA6NC98 RNU6-1226P-201ENST00000384317 107 ntBASIC0.39□□□□□ -2.35
CCDC88BA6NC98 MIR608-201ENST00000384820 100 ntBASIC0.39□□□□□ -2.35
CCDC88BA6NC98 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC0.39□□□□□ -2.35
CCDC88BA6NC98 AC090371.2-202ENST00000582239 644 ntTSL 5 BASIC0.39□□□□□ -2.35
CCDC88BA6NC98 AC090116.1-201ENST00000615679 446 ntBASIC0.39□□□□□ -2.35
CCDC88BA6NC98 AL121904.1-202ENST00000416638 656 ntTSL 5 BASIC0.38□□□□□ -2.35
CCDC88BA6NC98 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC0.38□□□□□ -2.35
CCDC88BA6NC98 GRM7-AS3-209ENST00000458713 454 ntTSL 3 BASIC0.38□□□□□ -2.35
CCDC88BA6NC98 AC108729.1-201ENST00000487812 947 ntBASIC0.38□□□□□ -2.35
CCDC88BA6NC98 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC0.38□□□□□ -2.35
CCDC88BA6NC98 AC121161.1-201ENST00000510606 652 ntBASIC0.38□□□□□ -2.35
CCDC88BA6NC98 AC007151.1-201ENST00000572774 483 ntBASIC0.38□□□□□ -2.35
CCDC88BA6NC98 MIR4765-201ENST00000585007 77 ntBASIC0.38□□□□□ -2.35
CCDC88BA6NC98 AC010894.2-203ENST00000606406 499 ntTSL 3 BASIC0.38□□□□□ -2.35
CCDC88BA6NC98 AC110491.1-201ENST00000562191 2010 ntBASIC0.38□□□□□ -2.35
CCDC88BA6NC98 RNU6-452P-201ENST00000384406 107 ntBASIC0.37□□□□□ -2.35
CCDC88BA6NC98 AC096649.2-201ENST00000416186 393 ntBASIC0.37□□□□□ -2.35
CCDC88BA6NC98 Z95118.1-201ENST00000421372 247 ntBASIC0.37□□□□□ -2.35
CCDC88BA6NC98 AL512844.2-201ENST00000433990 593 ntBASIC0.37□□□□□ -2.35
CCDC88BA6NC98 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC0.37□□□□□ -2.35
Retrieved 100 of 98,524 protein–RNA pairs in 129.7 ms