Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC1.75□□□□□ -2.13
TRAV40A0A0B4J280 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC1.75□□□□□ -2.13
TRAV40A0A0B4J280 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC1.74□□□□□ -2.13
TRAV40A0A0B4J280 HSPA8P4-201ENST00000511877 1920 ntBASIC1.74□□□□□ -2.13
TRAV40A0A0B4J280 AC091564.4-201ENST00000533934 2194 ntBASIC1.74□□□□□ -2.13
TRAV40A0A0B4J280 RNU4-91P-201ENST00000364778 135 ntBASIC1.74□□□□□ -2.13
TRAV40A0A0B4J280 Y_RNA.367-201ENST00000365544 101 ntBASIC1.74□□□□□ -2.13
TRAV40A0A0B4J280 RNU6-641P-201ENST00000384006 107 ntBASIC1.74□□□□□ -2.13
TRAV40A0A0B4J280 SNORA67.3-201ENST00000384366 140 ntBASIC1.74□□□□□ -2.13
TRAV40A0A0B4J280 AL023284.1-201ENST00000403956 276 ntBASIC1.74□□□□□ -2.13
TRAV40A0A0B4J280 MIR1289-2-201ENST00000408360 111 ntBASIC1.74□□□□□ -2.13
TRAV40A0A0B4J280 RNU2-68P-201ENST00000410878 191 ntBASIC1.74□□□□□ -2.13
TRAV40A0A0B4J280 SPATA17-AS1-201ENST00000415765 420 ntTSL 5 BASIC1.74□□□□□ -2.13
TRAV40A0A0B4J280 AL513477.1-202ENST00000417061 214 ntBASIC1.74□□□□□ -2.13
TRAV40A0A0B4J280 AC016710.1-201ENST00000421326 466 ntTSL 3 BASIC1.74□□□□□ -2.13
TRAV40A0A0B4J280 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC1.74□□□□□ -2.13
TRAV40A0A0B4J280 VN1R108P-201ENST00000431580 830 ntBASIC1.74□□□□□ -2.13
TRAV40A0A0B4J280 RPS24P1-201ENST00000438550 371 ntBASIC1.74□□□□□ -2.13
TRAV40A0A0B4J280 RPS15AP7-201ENST00000439294 405 ntBASIC1.74□□□□□ -2.13
TRAV40A0A0B4J280 MTND1P29-201ENST00000448112 647 ntBASIC1.74□□□□□ -2.13
TRAV40A0A0B4J280 RPL26P9-201ENST00000457466 433 ntBASIC1.74□□□□□ -2.13
TRAV40A0A0B4J280 MTCO2P29-201ENST00000465212 189 ntBASIC1.74□□□□□ -2.13
TRAV40A0A0B4J280 FAM92A1P2-202ENST00000504766 877 ntBASIC1.74□□□□□ -2.13
TRAV40A0A0B4J280 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC1.74□□□□□ -2.13
TRAV40A0A0B4J280 AC097460.1-201ENST00000514624 590 ntTSL 3 BASIC1.74□□□□□ -2.13
TRAV40A0A0B4J280 SCARNA17.1-201ENST00000516211 143 ntBASIC1.74□□□□□ -2.13
TRAV40A0A0B4J280 SCARNA17.2-201ENST00000516334 143 ntBASIC1.74□□□□□ -2.13
TRAV40A0A0B4J280 AC084851.1-201ENST00000529105 249 ntBASIC1.74□□□□□ -2.13
TRAV40A0A0B4J280 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC1.74□□□□□ -2.13
TRAV40A0A0B4J280 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC1.74□□□□□ -2.13
TRAV40A0A0B4J280 AC078814.3-201ENST00000553036 491 ntBASIC1.74□□□□□ -2.13
TRAV40A0A0B4J280 NRBF2P1-201ENST00000587407 859 ntBASIC1.74□□□□□ -2.13
TRAV40A0A0B4J280 AC008521.1-201ENST00000587471 187 ntBASIC1.74□□□□□ -2.13
TRAV40A0A0B4J280 AL670379.6-201ENST00000603753 252 ntBASIC1.74□□□□□ -2.13
TRAV40A0A0B4J280 AL670379.11-201ENST00000604059 253 ntBASIC1.74□□□□□ -2.13
TRAV40A0A0B4J280 AC008162.1-201ENST00000604718 254 ntBASIC1.74□□□□□ -2.13
TRAV40A0A0B4J280 AL670379.1-201ENST00000604752 252 ntBASIC1.74□□□□□ -2.13
TRAV40A0A0B4J280 AL670379.5-201ENST00000605253 252 ntBASIC1.74□□□□□ -2.13
TRAV40A0A0B4J280 AL670379.12-201ENST00000605291 253 ntBASIC1.74□□□□□ -2.13
TRAV40A0A0B4J280 AL670379.8-201ENST00000605353 252 ntBASIC1.74□□□□□ -2.13
TRAV40A0A0B4J280 AL670379.7-201ENST00000605823 252 ntBASIC1.74□□□□□ -2.13
TRAV40A0A0B4J280 CERS6-AS1-209ENST00000609766 642 ntTSL 5 BASIC1.74□□□□□ -2.13
TRAV40A0A0B4J280 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC1.74□□□□□ -2.13
TRAV40A0A0B4J280 SCARNA17.4-201ENST00000614296 143 ntBASIC1.74□□□□□ -2.13
TRAV40A0A0B4J280 GPR171-203ENST00000617554 960 ntAPPRIS P1 BASIC1.74□□□□□ -2.13
TRAV40A0A0B4J280 AL359740.1-201ENST00000624340 592 ntBASIC1.74□□□□□ -2.13
TRAV40A0A0B4J280 AL353651.2-201ENST00000635706 559 ntTSL 5 BASIC1.74□□□□□ -2.13
TRAV40A0A0B4J280 MIR219B-201ENST00000637023 88 ntBASIC1.74□□□□□ -2.13
TRAV40A0A0B4J280 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC1.74□□□□□ -2.13
TRAV40A0A0B4J280 FARSBP1-201ENST00000435808 1778 ntBASIC1.74□□□□□ -2.13
TRAV40A0A0B4J280 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC1.74□□□□□ -2.13
TRAV40A0A0B4J280 CEP57L1-203ENST00000368970 1680 ntAPPRIS ALT2 TSL 5 BASIC1.74□□□□□ -2.13
TRAV40A0A0B4J280 AC007336.1-201ENST00000576365 3828 ntBASIC1.73□□□□□ -2.13
TRAV40A0A0B4J280 MTND5P29-201ENST00000458676 1807 ntBASIC1.73□□□□□ -2.13
TRAV40A0A0B4J280 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC1.73□□□□□ -2.13
TRAV40A0A0B4J280 Y_RNA.159-201ENST00000363674 87 ntBASIC1.73□□□□□ -2.13
TRAV40A0A0B4J280 RNU4-40P-201ENST00000364351 143 ntBASIC1.73□□□□□ -2.13
TRAV40A0A0B4J280 AKAP14-203ENST00000371425 793 ntAPPRIS ALT2 TSL 5 BASIC1.73□□□□□ -2.13
TRAV40A0A0B4J280 RNU6-190P-201ENST00000384154 102 ntBASIC1.73□□□□□ -2.13
TRAV40A0A0B4J280 RNU6-658P-201ENST00000384606 106 ntBASIC1.73□□□□□ -2.13
TRAV40A0A0B4J280 Y_RNA.576-201ENST00000384781 102 ntBASIC1.73□□□□□ -2.13
TRAV40A0A0B4J280 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC1.73□□□□□ -2.13
TRAV40A0A0B4J280 AL079342.1-201ENST00000401460 267 ntBASIC1.73□□□□□ -2.13
TRAV40A0A0B4J280 RNU2-9P-201ENST00000410194 145 ntBASIC1.73□□□□□ -2.13
TRAV40A0A0B4J280 RNU2-39P-201ENST00000410604 198 ntBASIC1.73□□□□□ -2.13
TRAV40A0A0B4J280 RNU6-1328P-201ENST00000410938 106 ntBASIC1.73□□□□□ -2.13
TRAV40A0A0B4J280 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC1.73□□□□□ -2.13
TRAV40A0A0B4J280 ABCC5-AS1-201ENST00000422946 469 ntTSL 2 BASIC1.73□□□□□ -2.13
TRAV40A0A0B4J280 WARS2P1-201ENST00000429678 537 ntBASIC1.73□□□□□ -2.13
TRAV40A0A0B4J280 AL445488.1-202ENST00000430623 545 ntTSL 3 BASIC1.73□□□□□ -2.13
TRAV40A0A0B4J280 MTCO2P11-201ENST00000431069 680 ntBASIC1.73□□□□□ -2.13
TRAV40A0A0B4J280 HMGB1P27-201ENST00000431429 603 ntBASIC1.73□□□□□ -2.13
TRAV40A0A0B4J280 RPS15AP5-201ENST00000436276 388 ntBASIC1.73□□□□□ -2.13
TRAV40A0A0B4J280 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC1.73□□□□□ -2.13
TRAV40A0A0B4J280 MTND1P27-201ENST00000451117 902 ntBASIC1.73□□□□□ -2.13
TRAV40A0A0B4J280 C1DP4-201ENST00000455429 424 ntBASIC1.73□□□□□ -2.13
TRAV40A0A0B4J280 AL162395.1-201ENST00000457882 422 ntBASIC1.73□□□□□ -2.13
TRAV40A0A0B4J280 RNU7-23P-201ENST00000459465 62 ntBASIC1.73□□□□□ -2.13
TRAV40A0A0B4J280 MTND4LP3-201ENST00000468320 276 ntBASIC1.73□□□□□ -2.13
TRAV40A0A0B4J280 AC022493.1-201ENST00000492984 337 ntBASIC1.73□□□□□ -2.13
TRAV40A0A0B4J280 AC109927.2-201ENST00000506416 303 ntBASIC1.73□□□□□ -2.13
TRAV40A0A0B4J280 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC1.73□□□□□ -2.13
TRAV40A0A0B4J280 MTCO3P7-201ENST00000510008 774 ntBASIC1.73□□□□□ -2.13
TRAV40A0A0B4J280 GTF2H2C-212ENST00000512736 832 ntTSL 1 (best) BASIC1.73□□□□□ -2.13
TRAV40A0A0B4J280 RNU6-581P-201ENST00000516214 105 ntBASIC1.73□□□□□ -2.13
TRAV40A0A0B4J280 RNU6-703P-201ENST00000516946 107 ntBASIC1.73□□□□□ -2.13
TRAV40A0A0B4J280 HSPE1P18-201ENST00000517602 280 ntBASIC1.73□□□□□ -2.13
TRAV40A0A0B4J280 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC1.73□□□□□ -2.13
TRAV40A0A0B4J280 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC1.73□□□□□ -2.13
TRAV40A0A0B4J280 OR4R1P-201ENST00000529879 463 ntBASIC1.73□□□□□ -2.13
TRAV40A0A0B4J280 AP002963.1-201ENST00000530590 184 ntBASIC1.73□□□□□ -2.13
TRAV40A0A0B4J280 AC091047.1-201ENST00000533344 552 ntTSL 4 BASIC1.73□□□□□ -2.13
TRAV40A0A0B4J280 AC135279.1-201ENST00000543493 504 ntBASIC1.73□□□□□ -2.13
TRAV40A0A0B4J280 AC069061.2-202ENST00000580280 357 ntTSL 3 BASIC1.73□□□□□ -2.13
TRAV40A0A0B4J280 AC090616.3-201ENST00000582184 217 ntBASIC1.73□□□□□ -2.13
TRAV40A0A0B4J280 AC098848.2-201ENST00000588023 330 ntBASIC1.73□□□□□ -2.13
TRAV40A0A0B4J280 AC104365.1-201ENST00000588835 394 ntTSL 5 BASIC1.73□□□□□ -2.13
TRAV40A0A0B4J280 BNIP3P9-201ENST00000603714 553 ntBASIC1.73□□□□□ -2.13
TRAV40A0A0B4J280 AC025449.1-201ENST00000603896 529 ntBASIC1.73□□□□□ -2.13
TRAV40A0A0B4J280 AC091834.1-201ENST00000614543 472 ntBASIC1.73□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 110.4 ms