Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC3.35□□□□□ -1.87
VPS4AQ9UN37 MIR3672-201ENST00000584290 82 ntBASIC3.35□□□□□ -1.87
VPS4AQ9UN37 MIR5692C1-201ENST00000585309 91 ntBASIC3.35□□□□□ -1.87
VPS4AQ9UN37 AC023043.2-201ENST00000589678 1026 ntBASIC3.35□□□□□ -1.87
VPS4AQ9UN37 AC098617.1-215ENST00000594798 1152 ntTSL 5 BASIC3.35□□□□□ -1.87
VPS4AQ9UN37 AC007938.3-201ENST00000604965 623 ntBASIC3.35□□□□□ -1.87
VPS4AQ9UN37 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
VPS4AQ9UN37 SNORD39.4-201ENST00000620099 78 ntBASIC3.35□□□□□ -1.87
VPS4AQ9UN37 MIR8057-201ENST00000620957 69 ntBASIC3.35□□□□□ -1.87
VPS4AQ9UN37 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC3.35□□□□□ -1.87
VPS4AQ9UN37 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
VPS4AQ9UN37 AC022336.2-201ENST00000568966 2538 ntBASIC3.35□□□□□ -1.87
VPS4AQ9UN37 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC3.35□□□□□ -1.87
VPS4AQ9UN37 POLK-217ENST00000515295 1438 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
VPS4AQ9UN37 AC004944.1-201ENST00000517807 3059 ntBASIC3.35□□□□□ -1.87
VPS4AQ9UN37 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC3.35□□□□□ -1.87
VPS4AQ9UN37 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC3.35□□□□□ -1.87
VPS4AQ9UN37 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
VPS4AQ9UN37 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
VPS4AQ9UN37 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC3.34□□□□□ -1.87
VPS4AQ9UN37 GPRC6A-202ENST00000368549 2622 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
VPS4AQ9UN37 ZNF807-201ENST00000328088 1707 ntBASIC3.34□□□□□ -1.87
VPS4AQ9UN37 ADGRG2-206ENST00000360279 4702 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
VPS4AQ9UN37 MIR30E-201ENST00000362104 92 ntBASIC3.34□□□□□ -1.87
VPS4AQ9UN37 Y_RNA.33-201ENST00000362591 102 ntBASIC3.34□□□□□ -1.87
VPS4AQ9UN37 RNU1-33P-201ENST00000364249 162 ntBASIC3.34□□□□□ -1.87
VPS4AQ9UN37 RNU4-76P-201ENST00000364509 141 ntBASIC3.34□□□□□ -1.87
VPS4AQ9UN37 Y_RNA.356-201ENST00000365475 113 ntBASIC3.34□□□□□ -1.87
VPS4AQ9UN37 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
VPS4AQ9UN37 HIST1H2APS3-201ENST00000403259 134 ntBASIC3.34□□□□□ -1.87
VPS4AQ9UN37 RNU6-55P-201ENST00000411092 107 ntBASIC3.34□□□□□ -1.87
VPS4AQ9UN37 RNU6-954P-201ENST00000411355 107 ntBASIC3.34□□□□□ -1.87
VPS4AQ9UN37 AL022329.2-201ENST00000413494 660 ntTSL 5 BASIC3.34□□□□□ -1.87
VPS4AQ9UN37 DBIP2-201ENST00000419076 262 ntBASIC3.34□□□□□ -1.87
VPS4AQ9UN37 AC090952.1-201ENST00000424242 446 ntTSL 3 BASIC3.34□□□□□ -1.87
VPS4AQ9UN37 AC007919.1-201ENST00000429380 217 ntBASIC3.34□□□□□ -1.87
VPS4AQ9UN37 NDUFB1P2-201ENST00000449477 176 ntBASIC3.34□□□□□ -1.87
VPS4AQ9UN37 AC115115.1-201ENST00000449927 248 ntBASIC3.34□□□□□ -1.87
VPS4AQ9UN37 CECR9-201ENST00000453421 199 ntBASIC3.34□□□□□ -1.87
VPS4AQ9UN37 AC117503.1-201ENST00000472241 394 ntBASIC3.34□□□□□ -1.87
VPS4AQ9UN37 UBE2DNL-203ENST00000474922 222 ntBASIC3.34□□□□□ -1.87
VPS4AQ9UN37 AC079140.5-201ENST00000507882 310 ntBASIC3.34□□□□□ -1.87
VPS4AQ9UN37 MTND3P25-201ENST00000509243 135 ntBASIC3.34□□□□□ -1.87
VPS4AQ9UN37 SNORA70.18-201ENST00000516696 98 ntBASIC3.34□□□□□ -1.87
VPS4AQ9UN37 SNORA70.19-201ENST00000516717 90 ntBASIC3.34□□□□□ -1.87
VPS4AQ9UN37 RNU6-256P-201ENST00000516747 97 ntBASIC3.34□□□□□ -1.87
VPS4AQ9UN37 AC087362.1-201ENST00000527912 434 ntTSL 5 BASIC3.34□□□□□ -1.87
VPS4AQ9UN37 APAF1-207ENST00000547743 651 ntTSL 3 BASIC3.34□□□□□ -1.87
VPS4AQ9UN37 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC3.34□□□□□ -1.87
VPS4AQ9UN37 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC3.34□□□□□ -1.87
VPS4AQ9UN37 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC3.34□□□□□ -1.87
VPS4AQ9UN37 LINC01928-201ENST00000591029 504 ntTSL 3 BASIC3.34□□□□□ -1.87
VPS4AQ9UN37 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC3.34□□□□□ -1.87
VPS4AQ9UN37 ATP1B3P1-201ENST00000605365 821 ntBASIC3.34□□□□□ -1.87
VPS4AQ9UN37 AL138726.1-201ENST00000614873 333 ntBASIC3.34□□□□□ -1.87
VPS4AQ9UN37 AC022140.2-201ENST00000623500 188 ntBASIC3.34□□□□□ -1.87
VPS4AQ9UN37 KCNH7-204ENST00000618399 3713 ntTSL 5 BASIC3.34□□□□□ -1.88
VPS4AQ9UN37 TET2-204ENST00000413648 4973 ntTSL 1 (best) BASIC3.34□□□□□ -1.88
VPS4AQ9UN37 AC007256.1-201ENST00000392253 2765 ntBASIC3.34□□□□□ -1.88
VPS4AQ9UN37 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
VPS4AQ9UN37 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC3.33□□□□□ -1.88
VPS4AQ9UN37 MFSD8-233ENST00000641482 4860 ntBASIC3.33□□□□□ -1.88
VPS4AQ9UN37 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC3.33□□□□□ -1.88
VPS4AQ9UN37 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC3.33□□□□□ -1.88
VPS4AQ9UN37 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC3.33□□□□□ -1.88
VPS4AQ9UN37 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
VPS4AQ9UN37 KRTAP15-1-201ENST00000334067 671 ntAPPRIS P1 BASIC3.33□□□□□ -1.88
VPS4AQ9UN37 RNU4-79P-201ENST00000362764 141 ntBASIC3.33□□□□□ -1.88
VPS4AQ9UN37 MDM4-202ENST00000367180 547 ntTSL 3 BASIC3.33□□□□□ -1.88
VPS4AQ9UN37 RNU6-1013P-201ENST00000384180 107 ntBASIC3.33□□□□□ -1.88
VPS4AQ9UN37 VN1R36P-201ENST00000414936 291 ntBASIC3.33□□□□□ -1.88
VPS4AQ9UN37 AC106873.1-201ENST00000420664 459 ntTSL 3 BASIC3.33□□□□□ -1.88
VPS4AQ9UN37 TRIAP1P1-201ENST00000427062 225 ntBASIC3.33□□□□□ -1.88
VPS4AQ9UN37 AC005326.1-201ENST00000429197 123 ntBASIC3.33□□□□□ -1.88
VPS4AQ9UN37 PPP1R2P5-201ENST00000457256 603 ntBASIC3.33□□□□□ -1.88
VPS4AQ9UN37 U3.44-201ENST00000458938 192 ntBASIC3.33□□□□□ -1.88
VPS4AQ9UN37 RPL21P13-201ENST00000488305 481 ntBASIC3.33□□□□□ -1.88
VPS4AQ9UN37 RNU1-86P-201ENST00000516108 154 ntBASIC3.33□□□□□ -1.88
VPS4AQ9UN37 RNU1-107P-201ENST00000516617 154 ntBASIC3.33□□□□□ -1.88
VPS4AQ9UN37 GLYCAM1-201ENST00000546596 285 ntBASIC3.33□□□□□ -1.88
VPS4AQ9UN37 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC3.33□□□□□ -1.88
VPS4AQ9UN37 AC007948.1-201ENST00000581632 242 ntTSL 5 BASIC3.33□□□□□ -1.88
VPS4AQ9UN37 AL670379.10-201ENST00000604330 253 ntBASIC3.33□□□□□ -1.88
VPS4AQ9UN37 AL670379.9-201ENST00000605428 253 ntBASIC3.33□□□□□ -1.88
VPS4AQ9UN37 AC107294.3-201ENST00000609211 526 ntBASIC3.33□□□□□ -1.88
VPS4AQ9UN37 AL121757.2-201ENST00000611223 313 ntBASIC3.33□□□□□ -1.88
VPS4AQ9UN37 AC104237.2-201ENST00000612456 443 ntBASIC3.33□□□□□ -1.88
VPS4AQ9UN37 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
VPS4AQ9UN37 AC058791.1-201ENST00000608412 3198 ntBASIC3.33□□□□□ -1.88
VPS4AQ9UN37 MAPK10-266ENST00000641066 6555 ntBASIC3.33□□□□□ -1.88
VPS4AQ9UN37 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
VPS4AQ9UN37 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC3.33□□□□□ -1.88
VPS4AQ9UN37 AL513302.2-201ENST00000562313 1842 ntBASIC3.33□□□□□ -1.88
VPS4AQ9UN37 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC3.32□□□□□ -1.88
VPS4AQ9UN37 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC3.32□□□□□ -1.88
VPS4AQ9UN37 SNORD9-201ENST00000362566 104 ntBASIC3.32□□□□□ -1.88
VPS4AQ9UN37 RNU6-1303P-201ENST00000364841 107 ntBASIC3.32□□□□□ -1.88
VPS4AQ9UN37 RNU6-805P-201ENST00000365643 106 ntBASIC3.32□□□□□ -1.88
VPS4AQ9UN37 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC3.32□□□□□ -1.88
VPS4AQ9UN37 AP002088.1-201ENST00000382740 395 ntBASIC3.32□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 152.3 ms