Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 MTND4P23-201ENST00000447723 1363 ntBASIC3.64□□□□□ -1.83
TDP1Q9NUW8 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
TDP1Q9NUW8 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC3.64□□□□□ -1.83
TDP1Q9NUW8 Y_RNA.138-201ENST00000363462 102 ntBASIC3.64□□□□□ -1.83
TDP1Q9NUW8 RNU6-1188P-201ENST00000363795 107 ntBASIC3.64□□□□□ -1.83
TDP1Q9NUW8 RNU1-89P-201ENST00000384592 164 ntBASIC3.64□□□□□ -1.83
TDP1Q9NUW8 MTCYBP4-201ENST00000401524 249 ntBASIC3.64□□□□□ -1.83
TDP1Q9NUW8 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC3.64□□□□□ -1.83
TDP1Q9NUW8 RNU6-954P-201ENST00000411355 107 ntBASIC3.64□□□□□ -1.83
TDP1Q9NUW8 AC245054.2-201ENST00000415639 319 ntBASIC3.64□□□□□ -1.83
TDP1Q9NUW8 ATG3P1-201ENST00000419507 911 ntBASIC3.64□□□□□ -1.83
TDP1Q9NUW8 RPS15AP6-201ENST00000420703 385 ntBASIC3.64□□□□□ -1.83
TDP1Q9NUW8 AC245052.1-201ENST00000426213 410 ntTSL 3 BASIC3.64□□□□□ -1.83
TDP1Q9NUW8 AC005326.1-201ENST00000429197 123 ntBASIC3.64□□□□□ -1.83
TDP1Q9NUW8 AL355340.1-201ENST00000433085 344 ntTSL 3 BASIC3.64□□□□□ -1.83
TDP1Q9NUW8 AC010975.1-201ENST00000443301 669 ntTSL 3 BASIC3.64□□□□□ -1.83
TDP1Q9NUW8 DCLRE1CP1-201ENST00000454630 470 ntBASIC3.64□□□□□ -1.83
TDP1Q9NUW8 AC069360.1-201ENST00000503469 431 ntTSL 2 BASIC3.64□□□□□ -1.83
TDP1Q9NUW8 PARP8-211ENST00000505554 3825 ntTSL 5 BASIC3.64□□□□□ -1.83
TDP1Q9NUW8 AC116337.1-201ENST00000509680 687 ntBASIC3.64□□□□□ -1.83
TDP1Q9NUW8 RNU6-1016P-201ENST00000516689 94 ntBASIC3.64□□□□□ -1.83
TDP1Q9NUW8 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC3.64□□□□□ -1.83
TDP1Q9NUW8 AL163153.1-201ENST00000554223 283 ntBASIC3.64□□□□□ -1.83
TDP1Q9NUW8 AC093249.1-201ENST00000567049 203 ntBASIC3.64□□□□□ -1.83
TDP1Q9NUW8 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC3.64□□□□□ -1.83
TDP1Q9NUW8 AL645944.1-201ENST00000603857 493 ntBASIC3.64□□□□□ -1.83
TDP1Q9NUW8 AL160281.1-201ENST00000605307 311 ntBASIC3.64□□□□□ -1.83
TDP1Q9NUW8 RNU6ATAC35P-201ENST00000609276 444 ntBASIC3.64□□□□□ -1.83
TDP1Q9NUW8 AC064836.2-201ENST00000609491 462 ntBASIC3.64□□□□□ -1.83
TDP1Q9NUW8 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC3.64□□□□□ -1.83
TDP1Q9NUW8 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC3.64□□□□□ -1.83
TDP1Q9NUW8 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC3.64□□□□□ -1.83
TDP1Q9NUW8 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC3.64□□□□□ -1.83
TDP1Q9NUW8 FOXP2-224ENST00000635534 4290 ntTSL 5 BASIC3.64□□□□□ -1.83
TDP1Q9NUW8 CUL1P1-201ENST00000509510 2425 ntBASIC3.63□□□□□ -1.83
TDP1Q9NUW8 FAM35DP-201ENST00000323387 2712 ntBASIC3.63□□□□□ -1.83
TDP1Q9NUW8 RNU6-593P-201ENST00000364716 112 ntBASIC3.63□□□□□ -1.83
TDP1Q9NUW8 CD84-204ENST00000368048 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC3.63□□□□□ -1.83
TDP1Q9NUW8 U3.39-201ENST00000408569 239 ntBASIC3.63□□□□□ -1.83
TDP1Q9NUW8 MORN2-203ENST00000409131 544 ntTSL 5 BASIC3.63□□□□□ -1.83
TDP1Q9NUW8 RN7SKP53-201ENST00000411337 315 ntBASIC3.63□□□□□ -1.83
TDP1Q9NUW8 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC3.63□□□□□ -1.83
TDP1Q9NUW8 AC005300.1-201ENST00000428401 373 ntBASIC3.63□□□□□ -1.83
TDP1Q9NUW8 UBE2E2-AS1-202ENST00000430018 499 ntTSL 2 BASIC3.63□□□□□ -1.83
TDP1Q9NUW8 AC005534.2-201ENST00000431047 433 ntBASIC3.63□□□□□ -1.83
TDP1Q9NUW8 AL645568.3-201ENST00000433683 316 ntBASIC3.63□□□□□ -1.83
TDP1Q9NUW8 HIGD1AP11-201ENST00000438361 280 ntBASIC3.63□□□□□ -1.83
TDP1Q9NUW8 MRPS31P2-201ENST00000451581 518 ntBASIC3.63□□□□□ -1.83
TDP1Q9NUW8 RNU7-152P-201ENST00000458982 64 ntBASIC3.63□□□□□ -1.83
TDP1Q9NUW8 RNU7-170P-201ENST00000459303 61 ntBASIC3.63□□□□□ -1.83
TDP1Q9NUW8 AL138787.2-202ENST00000479395 385 ntTSL 2 BASIC3.63□□□□□ -1.83
TDP1Q9NUW8 AC005741.1-201ENST00000511094 432 ntBASIC3.63□□□□□ -1.83
TDP1Q9NUW8 LINC02374-202ENST00000515222 578 ntTSL 4 BASIC3.63□□□□□ -1.83
TDP1Q9NUW8 RNU6-703P-201ENST00000516946 107 ntBASIC3.63□□□□□ -1.83
TDP1Q9NUW8 RNU1-54P-201ENST00000517181 120 ntBASIC3.63□□□□□ -1.83
TDP1Q9NUW8 MS4A4E-206ENST00000528394 555 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
TDP1Q9NUW8 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC3.63□□□□□ -1.83
TDP1Q9NUW8 H3F3AP1-201ENST00000559984 334 ntBASIC3.63□□□□□ -1.83
TDP1Q9NUW8 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
TDP1Q9NUW8 KLKP1-201ENST00000595979 403 ntBASIC3.63□□□□□ -1.83
TDP1Q9NUW8 AC124303.1-201ENST00000605703 360 ntBASIC3.63□□□□□ -1.83
TDP1Q9NUW8 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
TDP1Q9NUW8 AL133215.3-201ENST00000609801 448 ntBASIC3.63□□□□□ -1.83
TDP1Q9NUW8 MIR486-1-201ENST00000612171 68 ntBASIC3.63□□□□□ -1.83
TDP1Q9NUW8 AC098657.3-201ENST00000620434 263 ntBASIC3.63□□□□□ -1.83
TDP1Q9NUW8 U2.21-201ENST00000637295 81 ntBASIC3.63□□□□□ -1.83
TDP1Q9NUW8 U6.99-201ENST00000637524 83 ntBASIC3.63□□□□□ -1.83
TDP1Q9NUW8 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
TDP1Q9NUW8 CFAP44-202ENST00000393845 7069 ntAPPRIS ALT2 TSL 5 BASIC3.63□□□□□ -1.83
TDP1Q9NUW8 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC3.63□□□□□ -1.83
TDP1Q9NUW8 AC093274.1-201ENST00000503488 5454 ntTSL 5 BASIC3.63□□□□□ -1.83
TDP1Q9NUW8 MYSM1-203ENST00000472487 7785 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
TDP1Q9NUW8 LINC00836-202ENST00000626230 1640 ntTSL 2 BASIC3.62□□□□□ -1.83
TDP1Q9NUW8 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC3.62□□□□□ -1.83
TDP1Q9NUW8 DGKH-201ENST00000261491 17261 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
TDP1Q9NUW8 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC3.62□□□□□ -1.83
TDP1Q9NUW8 SNORD62.1-201ENST00000362541 86 ntBASIC3.62□□□□□ -1.83
TDP1Q9NUW8 RNU6-37P-201ENST00000362692 107 ntBASIC3.62□□□□□ -1.83
TDP1Q9NUW8 RNA5SP322-201ENST00000363617 119 ntBASIC3.62□□□□□ -1.83
TDP1Q9NUW8 RNU6-11P-201ENST00000364234 107 ntBASIC3.62□□□□□ -1.83
TDP1Q9NUW8 RNU6-7-201ENST00000364784 107 ntBASIC3.62□□□□□ -1.83
TDP1Q9NUW8 RNU6-8-201ENST00000365467 107 ntBASIC3.62□□□□□ -1.83
TDP1Q9NUW8 RNU6-25P-201ENST00000383873 107 ntBASIC3.62□□□□□ -1.83
TDP1Q9NUW8 RNU6-1-201ENST00000383898 107 ntBASIC3.62□□□□□ -1.83
TDP1Q9NUW8 RNU6-48P-201ENST00000384161 107 ntBASIC3.62□□□□□ -1.83
TDP1Q9NUW8 RNU6-36P-201ENST00000384172 107 ntBASIC3.62□□□□□ -1.83
TDP1Q9NUW8 RNU6-4P-201ENST00000384205 107 ntBASIC3.62□□□□□ -1.83
TDP1Q9NUW8 RNU6-5P-201ENST00000384238 107 ntBASIC3.62□□□□□ -1.83
TDP1Q9NUW8 RNU6-3P-201ENST00000384314 107 ntBASIC3.62□□□□□ -1.83
TDP1Q9NUW8 RNU6-16P-201ENST00000384385 107 ntBASIC3.62□□□□□ -1.83
TDP1Q9NUW8 RNU6-15P-201ENST00000384534 107 ntBASIC3.62□□□□□ -1.83
TDP1Q9NUW8 RNU6-2-201ENST00000384627 107 ntBASIC3.62□□□□□ -1.83
TDP1Q9NUW8 RNU6-29P-201ENST00000384637 107 ntBASIC3.62□□□□□ -1.83
TDP1Q9NUW8 RNU6-9-201ENST00000384776 107 ntBASIC3.62□□□□□ -1.83
TDP1Q9NUW8 RNU6-33P-201ENST00000384793 107 ntBASIC3.62□□□□□ -1.83
TDP1Q9NUW8 U3.19-201ENST00000390893 196 ntBASIC3.62□□□□□ -1.83
TDP1Q9NUW8 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC3.62□□□□□ -1.83
TDP1Q9NUW8 AL445529.1-201ENST00000398713 389 ntBASIC3.62□□□□□ -1.83
TDP1Q9NUW8 RN7SKP111-201ENST00000410349 271 ntBASIC3.62□□□□□ -1.83
TDP1Q9NUW8 AL096701.2-201ENST00000416920 238 ntBASIC3.62□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 124.1 ms