Protein–RNA interactions for Protein: Q9H4Z3

PCIF1, Phosphorylated CTD-interacting factor 1, humanhuman

Predictions only

Length 704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCIF1Q9H4Z3 TARID-205ENST00000607033 2960 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
PCIF1Q9H4Z3 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC3.9□□□□□ -1.79
PCIF1Q9H4Z3 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
PCIF1Q9H4Z3 OTUD4P1-201ENST00000237841 3067 ntBASIC3.89□□□□□ -1.79
PCIF1Q9H4Z3 AKAP6-201ENST00000280979 15006 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
PCIF1Q9H4Z3 Y_RNA.2-201ENST00000362330 96 ntBASIC3.89□□□□□ -1.79
PCIF1Q9H4Z3 Y_RNA.148-201ENST00000363557 117 ntBASIC3.89□□□□□ -1.79
PCIF1Q9H4Z3 Y_RNA.422-201ENST00000384054 114 ntBASIC3.89□□□□□ -1.79
PCIF1Q9H4Z3 RNU6-217P-201ENST00000384164 104 ntBASIC3.89□□□□□ -1.79
PCIF1Q9H4Z3 Y_RNA.463-201ENST00000384271 102 ntBASIC3.89□□□□□ -1.79
PCIF1Q9H4Z3 PTMAP2-201ENST00000397627 327 ntBASIC3.89□□□□□ -1.79
PCIF1Q9H4Z3 RN7SKP27-201ENST00000410684 333 ntBASIC3.89□□□□□ -1.79
PCIF1Q9H4Z3 SNORD56-201ENST00000413522 71 ntBASIC3.89□□□□□ -1.79
PCIF1Q9H4Z3 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC3.89□□□□□ -1.79
PCIF1Q9H4Z3 TTTY8-202ENST00000426035 518 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
PCIF1Q9H4Z3 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
PCIF1Q9H4Z3 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC3.89□□□□□ -1.79
PCIF1Q9H4Z3 AL159987.2-201ENST00000432754 307 ntBASIC3.89□□□□□ -1.79
PCIF1Q9H4Z3 AL031274.1-201ENST00000450334 232 ntBASIC3.89□□□□□ -1.79
PCIF1Q9H4Z3 PCMTD1P1-201ENST00000455560 355 ntBASIC3.89□□□□□ -1.79
PCIF1Q9H4Z3 TTTY8B-202ENST00000455570 518 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
PCIF1Q9H4Z3 RPL21P104-201ENST00000464143 478 ntBASIC3.89□□□□□ -1.79
PCIF1Q9H4Z3 PTPRG-AS1-210ENST00000498655 547 ntTSL 4 BASIC3.89□□□□□ -1.79
PCIF1Q9H4Z3 ENSA-210ENST00000503241 574 ntTSL 3 BASIC3.89□□□□□ -1.79
PCIF1Q9H4Z3 GYPA-208ENST00000512064 441 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
PCIF1Q9H4Z3 PTP4A1P4-201ENST00000512479 322 ntBASIC3.89□□□□□ -1.79
PCIF1Q9H4Z3 RNU6-120P-201ENST00000516077 103 ntBASIC3.89□□□□□ -1.79
PCIF1Q9H4Z3 RN7SKP295-201ENST00000517264 153 ntBASIC3.89□□□□□ -1.79
PCIF1Q9H4Z3 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC3.89□□□□□ -1.79
PCIF1Q9H4Z3 H3F3AP1-201ENST00000559984 334 ntBASIC3.89□□□□□ -1.79
PCIF1Q9H4Z3 MIR3158-1-201ENST00000583596 81 ntBASIC3.89□□□□□ -1.79
PCIF1Q9H4Z3 MIR3922-201ENST00000585192 84 ntBASIC3.89□□□□□ -1.79
PCIF1Q9H4Z3 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC3.89□□□□□ -1.79
PCIF1Q9H4Z3 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC3.89□□□□□ -1.79
PCIF1Q9H4Z3 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC3.89□□□□□ -1.79
PCIF1Q9H4Z3 Xist_exon1.1-201ENST00000618930 85 ntBASIC3.89□□□□□ -1.79
PCIF1Q9H4Z3 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC3.89□□□□□ -1.79
PCIF1Q9H4Z3 LINC02246-205ENST00000627623 417 ntTSL 5 BASIC3.89□□□□□ -1.79
PCIF1Q9H4Z3 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
PCIF1Q9H4Z3 AC009093.8-201ENST00000641769 292 ntBASIC3.89□□□□□ -1.79
PCIF1Q9H4Z3 LINC01505-206ENST00000637046 4266 ntTSL 5 BASIC3.89□□□□□ -1.79
PCIF1Q9H4Z3 AL133412.1-201ENST00000380194 2992 ntBASIC3.89□□□□□ -1.79
PCIF1Q9H4Z3 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
PCIF1Q9H4Z3 AC118273.1-201ENST00000525324 3006 ntBASIC3.89□□□□□ -1.79
PCIF1Q9H4Z3 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC3.89□□□□□ -1.79
PCIF1Q9H4Z3 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
PCIF1Q9H4Z3 EVI5-208ENST00000540033 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.88□□□□□ -1.79
PCIF1Q9H4Z3 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
PCIF1Q9H4Z3 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC3.88□□□□□ -1.79
PCIF1Q9H4Z3 CXorf65-201ENST00000374251 601 ntAPPRIS P1 TSL 5 BASIC3.88□□□□□ -1.79
PCIF1Q9H4Z3 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
PCIF1Q9H4Z3 AC017079.2-201ENST00000416102 485 ntBASIC3.88□□□□□ -1.79
PCIF1Q9H4Z3 AC243428.1-201ENST00000421099 264 ntBASIC3.88□□□□□ -1.79
PCIF1Q9H4Z3 TRAPPC2P4-201ENST00000421750 331 ntBASIC3.88□□□□□ -1.79
PCIF1Q9H4Z3 AC006946.1-201ENST00000429106 328 ntBASIC3.88□□□□□ -1.79
PCIF1Q9H4Z3 AL035666.1-201ENST00000446195 348 ntBASIC3.88□□□□□ -1.79
PCIF1Q9H4Z3 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC3.88□□□□□ -1.79
PCIF1Q9H4Z3 HMGN2P16-201ENST00000456802 261 ntBASIC3.88□□□□□ -1.79
PCIF1Q9H4Z3 AC106707.2-201ENST00000484182 374 ntBASIC3.88□□□□□ -1.79
PCIF1Q9H4Z3 SNORA67.7-201ENST00000516664 135 ntBASIC3.88□□□□□ -1.79
PCIF1Q9H4Z3 ZNF192P1-203ENST00000565888 810 ntBASIC3.88□□□□□ -1.79
PCIF1Q9H4Z3 AL645944.1-201ENST00000603857 493 ntBASIC3.88□□□□□ -1.79
PCIF1Q9H4Z3 FTX_3.1-201ENST00000610451 147 ntBASIC3.88□□□□□ -1.79
PCIF1Q9H4Z3 AL161629.2-201ENST00000615347 275 ntBASIC3.88□□□□□ -1.79
PCIF1Q9H4Z3 AC006133.1-201ENST00000617106 264 ntBASIC3.88□□□□□ -1.79
PCIF1Q9H4Z3 ADGRL2-211ENST00000370730 6173 ntTSL 5 BASIC3.88□□□□□ -1.79
PCIF1Q9H4Z3 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC3.88□□□□□ -1.79
PCIF1Q9H4Z3 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC3.87□□□□□ -1.79
PCIF1Q9H4Z3 AC087521.2-201ENST00000499066 2190 ntTSL 2 BASIC3.87□□□□□ -1.79
PCIF1Q9H4Z3 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC3.87□□□□□ -1.79
PCIF1Q9H4Z3 AC128685.1-201ENST00000490357 1834 ntTSL 5 BASIC3.87□□□□□ -1.79
PCIF1Q9H4Z3 RN7SKP53-201ENST00000411337 315 ntBASIC3.87□□□□□ -1.79
PCIF1Q9H4Z3 AL117339.3-201ENST00000418733 162 ntBASIC3.87□□□□□ -1.79
PCIF1Q9H4Z3 AC018865.2-201ENST00000423631 129 ntBASIC3.87□□□□□ -1.79
PCIF1Q9H4Z3 AC091286.1-201ENST00000431233 461 ntBASIC3.87□□□□□ -1.79
PCIF1Q9H4Z3 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC3.87□□□□□ -1.79
PCIF1Q9H4Z3 DAP3P1-201ENST00000441522 278 ntBASIC3.87□□□□□ -1.79
PCIF1Q9H4Z3 RPL23AP45-201ENST00000476406 468 ntBASIC3.87□□□□□ -1.79
PCIF1Q9H4Z3 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC3.87□□□□□ -1.79
PCIF1Q9H4Z3 RNU6-470P-201ENST00000515954 104 ntBASIC3.87□□□□□ -1.79
PCIF1Q9H4Z3 RNU6-1282P-201ENST00000516735 96 ntBASIC3.87□□□□□ -1.79
PCIF1Q9H4Z3 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC3.87□□□□□ -1.79
PCIF1Q9H4Z3 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC3.87□□□□□ -1.79
PCIF1Q9H4Z3 AC012100.2-201ENST00000558317 304 ntTSL 5 BASIC3.87□□□□□ -1.79
PCIF1Q9H4Z3 AC074050.1-201ENST00000563247 211 ntBASIC3.87□□□□□ -1.79
PCIF1Q9H4Z3 AC011824.2-201ENST00000579896 579 ntTSL 4 BASIC3.87□□□□□ -1.79
PCIF1Q9H4Z3 AC008121.1-201ENST00000603244 268 ntBASIC3.87□□□□□ -1.79
PCIF1Q9H4Z3 AL591516.1-201ENST00000611326 274 ntBASIC3.87□□□□□ -1.79
PCIF1Q9H4Z3 TEX41-280ENST00000629185 591 ntTSL 5 BASIC3.87□□□□□ -1.79
PCIF1Q9H4Z3 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC3.87□□□□□ -1.79
PCIF1Q9H4Z3 TMEM71-202ENST00000377901 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC3.87□□□□□ -1.79
PCIF1Q9H4Z3 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC3.87□□□□□ -1.79
PCIF1Q9H4Z3 DTWD1-201ENST00000251250 13776 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
PCIF1Q9H4Z3 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC3.87□□□□□ -1.79
PCIF1Q9H4Z3 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC3.87□□□□□ -1.79
PCIF1Q9H4Z3 PNPT1P2-201ENST00000456768 2050 ntBASIC3.86□□□□□ -1.79
PCIF1Q9H4Z3 MTND4P1-201ENST00000457501 1466 ntBASIC3.86□□□□□ -1.79
PCIF1Q9H4Z3 AL672296.1-201ENST00000427780 2158 ntBASIC3.86□□□□□ -1.79
PCIF1Q9H4Z3 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC3.86□□□□□ -1.79
PCIF1Q9H4Z3 RNU6-827P-201ENST00000365553 106 ntBASIC3.86□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 134 ms