Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC3.31□□□□□ -1.88
PAAF1Q9BRP4 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC3.31□□□□□ -1.88
PAAF1Q9BRP4 AC007496.3-201ENST00000624987 3443 ntBASIC3.31□□□□□ -1.88
PAAF1Q9BRP4 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC3.31□□□□□ -1.88
PAAF1Q9BRP4 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
PAAF1Q9BRP4 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC3.31□□□□□ -1.88
PAAF1Q9BRP4 AC058791.1-201ENST00000608412 3198 ntBASIC3.3□□□□□ -1.88
PAAF1Q9BRP4 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC3.3□□□□□ -1.88
PAAF1Q9BRP4 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC3.3□□□□□ -1.88
PAAF1Q9BRP4 PKIB-201ENST00000258014 1595 ntTSL 2 BASIC3.3□□□□□ -1.88
PAAF1Q9BRP4 SNORA71.1-201ENST00000364523 117 ntBASIC3.3□□□□□ -1.88
PAAF1Q9BRP4 IARS-201ENST00000375627 697 ntTSL 3 BASIC3.3□□□□□ -1.88
PAAF1Q9BRP4 Y_RNA.414-201ENST00000384011 101 ntBASIC3.3□□□□□ -1.88
PAAF1Q9BRP4 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC3.3□□□□□ -1.88
PAAF1Q9BRP4 EIF4EBP2P3-201ENST00000403144 334 ntBASIC3.3□□□□□ -1.88
PAAF1Q9BRP4 RN7SKP32-201ENST00000410167 303 ntBASIC3.3□□□□□ -1.88
PAAF1Q9BRP4 AC068295.1-201ENST00000413056 153 ntTSL 3 BASIC3.3□□□□□ -1.88
PAAF1Q9BRP4 AL353621.1-201ENST00000418219 243 ntBASIC3.3□□□□□ -1.88
PAAF1Q9BRP4 BX679664.1-201ENST00000434429 253 ntBASIC3.3□□□□□ -1.88
PAAF1Q9BRP4 AC092755.1-201ENST00000441746 97 ntTSL 3 BASIC3.3□□□□□ -1.88
PAAF1Q9BRP4 AL078601.1-201ENST00000444542 271 ntBASIC3.3□□□□□ -1.88
PAAF1Q9BRP4 RPL37P4-201ENST00000448908 268 ntBASIC3.3□□□□□ -1.88
PAAF1Q9BRP4 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC3.3□□□□□ -1.88
PAAF1Q9BRP4 SNORA14.1-201ENST00000516113 141 ntBASIC3.3□□□□□ -1.88
PAAF1Q9BRP4 AC069113.1-201ENST00000517763 267 ntBASIC3.3□□□□□ -1.88
PAAF1Q9BRP4 AC090136.1-201ENST00000520009 240 ntBASIC3.3□□□□□ -1.88
PAAF1Q9BRP4 RNU6-323P-201ENST00000521915 107 ntBASIC3.3□□□□□ -1.88
PAAF1Q9BRP4 AC100768.1-201ENST00000525512 506 ntTSL 3 BASIC3.3□□□□□ -1.88
PAAF1Q9BRP4 CYCSP27-201ENST00000527643 293 ntBASIC3.3□□□□□ -1.88
PAAF1Q9BRP4 MTCO3P23-201ENST00000561363 289 ntBASIC3.3□□□□□ -1.88
PAAF1Q9BRP4 AMZ2P1-203ENST00000565833 850 ntBASIC3.3□□□□□ -1.88
PAAF1Q9BRP4 AC011461.1-201ENST00000592671 357 ntTSL 3 BASIC3.3□□□□□ -1.88
PAAF1Q9BRP4 NUTF2P8-201ENST00000604593 363 ntBASIC3.3□□□□□ -1.88
PAAF1Q9BRP4 AC002044.1-201ENST00000606707 158 ntBASIC3.3□□□□□ -1.88
PAAF1Q9BRP4 AC009994.1-201ENST00000606889 253 ntBASIC3.3□□□□□ -1.88
PAAF1Q9BRP4 AC093732.2-201ENST00000607950 274 ntBASIC3.3□□□□□ -1.88
PAAF1Q9BRP4 AC025253.1-201ENST00000613623 543 ntBASIC3.3□□□□□ -1.88
PAAF1Q9BRP4 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC3.3□□□□□ -1.88
PAAF1Q9BRP4 AL365361.1-201ENST00000566942 3481 ntBASIC3.3□□□□□ -1.88
PAAF1Q9BRP4 AP001148.1-201ENST00000624124 2359 ntBASIC3.3□□□□□ -1.88
PAAF1Q9BRP4 SLCO1B1-201ENST00000256958 2229 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
PAAF1Q9BRP4 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC3.29□□□□□ -1.88
PAAF1Q9BRP4 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC3.29□□□□□ -1.88
PAAF1Q9BRP4 KLRA1P-202ENST00000510134 1410 ntTSL 5 BASIC3.29□□□□□ -1.88
PAAF1Q9BRP4 MIR22-201ENST00000362190 85 ntBASIC3.29□□□□□ -1.88
PAAF1Q9BRP4 SNORD3E-201ENST00000362899 217 ntBASIC3.29□□□□□ -1.88
PAAF1Q9BRP4 RNU6-266P-201ENST00000364225 107 ntBASIC3.29□□□□□ -1.88
PAAF1Q9BRP4 MIR34A-201ENST00000385130 110 ntBASIC3.29□□□□□ -1.88
PAAF1Q9BRP4 MIR450B-201ENST00000401182 78 ntBASIC3.29□□□□□ -1.88
PAAF1Q9BRP4 MIR888-201ENST00000401186 77 ntBASIC3.29□□□□□ -1.88
PAAF1Q9BRP4 HIST1H2APS3-201ENST00000403259 134 ntBASIC3.29□□□□□ -1.88
PAAF1Q9BRP4 AL138878.1-201ENST00000405131 347 ntBASIC3.29□□□□□ -1.88
PAAF1Q9BRP4 RNU6-1148P-201ENST00000410992 104 ntBASIC3.29□□□□□ -1.88
PAAF1Q9BRP4 Y_RNA.623-201ENST00000411128 95 ntBASIC3.29□□□□□ -1.88
PAAF1Q9BRP4 MTND3P8-201ENST00000412909 339 ntBASIC3.29□□□□□ -1.88
PAAF1Q9BRP4 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC3.29□□□□□ -1.88
PAAF1Q9BRP4 AL159169.1-201ENST00000421119 127 ntBASIC3.29□□□□□ -1.88
PAAF1Q9BRP4 AC099548.1-201ENST00000421443 426 ntBASIC3.29□□□□□ -1.88
PAAF1Q9BRP4 AL162726.4-201ENST00000422010 673 ntTSL 5 BASIC3.29□□□□□ -1.88
PAAF1Q9BRP4 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC3.29□□□□□ -1.88
PAAF1Q9BRP4 AL353729.1-201ENST00000425044 720 ntBASIC3.29□□□□□ -1.88
PAAF1Q9BRP4 MTCO3P46-201ENST00000425787 232 ntBASIC3.29□□□□□ -1.88
PAAF1Q9BRP4 AC098614.2-201ENST00000426040 255 ntBASIC3.29□□□□□ -1.88
PAAF1Q9BRP4 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC3.29□□□□□ -1.88
PAAF1Q9BRP4 SNRPEP8-201ENST00000442866 260 ntBASIC3.29□□□□□ -1.88
PAAF1Q9BRP4 BRK1P2-201ENST00000442875 223 ntBASIC3.29□□□□□ -1.88
PAAF1Q9BRP4 GPC6-AS2-201ENST00000445540 587 ntTSL 5 BASIC3.29□□□□□ -1.88
PAAF1Q9BRP4 RPL26P9-201ENST00000457466 433 ntBASIC3.29□□□□□ -1.88
PAAF1Q9BRP4 AC092798.1-201ENST00000458542 409 ntBASIC3.29□□□□□ -1.88
PAAF1Q9BRP4 AC010401.1-201ENST00000463867 348 ntBASIC3.29□□□□□ -1.88
PAAF1Q9BRP4 AC097462.2-201ENST00000504623 481 ntBASIC3.29□□□□□ -1.88
PAAF1Q9BRP4 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC3.29□□□□□ -1.88
PAAF1Q9BRP4 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC3.29□□□□□ -1.88
PAAF1Q9BRP4 AC114781.4-201ENST00000513707 639 ntBASIC3.29□□□□□ -1.88
PAAF1Q9BRP4 RNU1-143P-201ENST00000516296 146 ntBASIC3.29□□□□□ -1.88
PAAF1Q9BRP4 RNU7-30P-201ENST00000516835 62 ntBASIC3.29□□□□□ -1.88
PAAF1Q9BRP4 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC3.29□□□□□ -1.88
PAAF1Q9BRP4 AC243960.4-201ENST00000600532 288 ntBASIC3.29□□□□□ -1.88
PAAF1Q9BRP4 MTND4LP5-201ENST00000605152 292 ntBASIC3.29□□□□□ -1.88
PAAF1Q9BRP4 U1.23-201ENST00000610293 146 ntBASIC3.29□□□□□ -1.88
PAAF1Q9BRP4 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
PAAF1Q9BRP4 RNU1-68P-201ENST00000615382 146 ntBASIC3.29□□□□□ -1.88
PAAF1Q9BRP4 U1.39-201ENST00000621562 146 ntBASIC3.29□□□□□ -1.88
PAAF1Q9BRP4 MIR6852-201ENST00000621699 66 ntBASIC3.29□□□□□ -1.88
PAAF1Q9BRP4 AC005858.4-201ENST00000623191 700 ntBASIC3.29□□□□□ -1.88
PAAF1Q9BRP4 SCARNA15.3-201ENST00000626315 122 ntBASIC3.29□□□□□ -1.88
PAAF1Q9BRP4 SCARNA4.1-201ENST00000628597 123 ntBASIC3.29□□□□□ -1.88
PAAF1Q9BRP4 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC3.29□□□□□ -1.88
PAAF1Q9BRP4 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
PAAF1Q9BRP4 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
PAAF1Q9BRP4 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC3.29□□□□□ -1.88
PAAF1Q9BRP4 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC3.29□□□□□ -1.88
PAAF1Q9BRP4 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC3.29□□□□□ -1.88
PAAF1Q9BRP4 AC010733.2-201ENST00000589496 5702 ntBASIC3.28□□□□□ -1.88
PAAF1Q9BRP4 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC3.28□□□□□ -1.88
PAAF1Q9BRP4 AL136164.4-201ENST00000625013 2135 ntBASIC3.28□□□□□ -1.88
PAAF1Q9BRP4 SPAG11A-202ENST00000326625 445 ntTSL 5 BASIC3.28□□□□□ -1.88
PAAF1Q9BRP4 AC073325.2-201ENST00000339545 159 ntBASIC3.28□□□□□ -1.88
PAAF1Q9BRP4 U3.12-201ENST00000364498 214 ntBASIC3.28□□□□□ -1.88
PAAF1Q9BRP4 SNORA75B-201ENST00000384053 137 ntBASIC3.28□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 136.8 ms