Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC3.76□□□□□ -1.81
NUP88Q99567 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC3.76□□□□□ -1.81
NUP88Q99567 SNORA31.1-201ENST00000515993 133 ntBASIC3.76□□□□□ -1.81
NUP88Q99567 SNORA14.1-201ENST00000516113 141 ntBASIC3.76□□□□□ -1.81
NUP88Q99567 SNORA31.5-201ENST00000516190 133 ntBASIC3.76□□□□□ -1.81
NUP88Q99567 RNU6-273P-201ENST00000516937 96 ntBASIC3.76□□□□□ -1.81
NUP88Q99567 APAF1-207ENST00000547743 651 ntTSL 3 BASIC3.76□□□□□ -1.81
NUP88Q99567 AC090115.3-201ENST00000553218 849 ntBASIC3.76□□□□□ -1.81
NUP88Q99567 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC3.76□□□□□ -1.81
NUP88Q99567 BNIP3P25-201ENST00000596023 559 ntBASIC3.76□□□□□ -1.81
NUP88Q99567 NUTF2P8-201ENST00000604593 363 ntBASIC3.76□□□□□ -1.81
NUP88Q99567 CTHRC1P1-201ENST00000605383 469 ntBASIC3.76□□□□□ -1.81
NUP88Q99567 AL162274.2-201ENST00000614406 332 ntBASIC3.76□□□□□ -1.81
NUP88Q99567 AL138880.2-201ENST00000616214 239 ntBASIC3.76□□□□□ -1.81
NUP88Q99567 ATP5A1P2-202ENST00000616464 443 ntBASIC3.76□□□□□ -1.81
NUP88Q99567 AC092794.2-201ENST00000620933 563 ntBASIC3.76□□□□□ -1.81
NUP88Q99567 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC3.76□□□□□ -1.81
NUP88Q99567 U6.98-201ENST00000637157 84 ntBASIC3.76□□□□□ -1.81
NUP88Q99567 MTND5P7-201ENST00000413558 1798 ntBASIC3.76□□□□□ -1.81
NUP88Q99567 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC3.75□□□□□ -1.81
NUP88Q99567 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC3.75□□□□□ -1.81
NUP88Q99567 SNORD113-7-201ENST00000363762 77 ntBASIC3.75□□□□□ -1.81
NUP88Q99567 Y_RNA.279-201ENST00000364763 95 ntBASIC3.75□□□□□ -1.81
NUP88Q99567 RNU6-198P-201ENST00000384258 104 ntBASIC3.75□□□□□ -1.81
NUP88Q99567 RNA5SP252-201ENST00000391131 119 ntBASIC3.75□□□□□ -1.81
NUP88Q99567 RNU4-47P-201ENST00000410876 114 ntBASIC3.75□□□□□ -1.81
NUP88Q99567 USP9YP20-201ENST00000419224 558 ntBASIC3.75□□□□□ -1.81
NUP88Q99567 RPS15AP6-201ENST00000420703 385 ntBASIC3.75□□□□□ -1.81
NUP88Q99567 AL627311.1-201ENST00000431514 115 ntBASIC3.75□□□□□ -1.81
NUP88Q99567 MYL8P-204ENST00000431574 518 ntBASIC3.75□□□□□ -1.81
NUP88Q99567 AL353705.1-201ENST00000433468 480 ntBASIC3.75□□□□□ -1.81
NUP88Q99567 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC3.75□□□□□ -1.81
NUP88Q99567 AL031183.1-201ENST00000457667 207 ntBASIC3.75□□□□□ -1.81
NUP88Q99567 AP000852.1-201ENST00000472460 573 ntBASIC3.75□□□□□ -1.81
NUP88Q99567 HMGN2P13-201ENST00000476476 274 ntBASIC3.75□□□□□ -1.81
NUP88Q99567 TAF8-207ENST00000482432 556 ntTSL 2 BASIC3.75□□□□□ -1.81
NUP88Q99567 FAM206BP-201ENST00000510179 541 ntBASIC3.75□□□□□ -1.81
NUP88Q99567 RNU4-49P-201ENST00000516080 140 ntBASIC3.75□□□□□ -1.81
NUP88Q99567 RNU1-86P-201ENST00000516108 154 ntBASIC3.75□□□□□ -1.81
NUP88Q99567 RNU1-107P-201ENST00000516617 154 ntBASIC3.75□□□□□ -1.81
NUP88Q99567 RNU6-323P-201ENST00000521915 107 ntBASIC3.75□□□□□ -1.81
NUP88Q99567 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC3.75□□□□□ -1.81
NUP88Q99567 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
NUP88Q99567 UBL5P2-201ENST00000583788 219 ntBASIC3.75□□□□□ -1.81
NUP88Q99567 AC005498.1-201ENST00000592125 465 ntBASIC3.75□□□□□ -1.81
NUP88Q99567 AL157817.1-201ENST00000614264 790 ntBASIC3.75□□□□□ -1.81
NUP88Q99567 Y_RNA.804-201ENST00000615262 101 ntBASIC3.75□□□□□ -1.81
NUP88Q99567 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC3.75□□□□□ -1.81
NUP88Q99567 AC018692.3-201ENST00000623929 123 ntBASIC3.75□□□□□ -1.81
NUP88Q99567 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC3.75□□□□□ -1.81
NUP88Q99567 BAZ2B-202ENST00000343439 2364 ntTSL 5 BASIC3.75□□□□□ -1.81
NUP88Q99567 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC3.75□□□□□ -1.81
NUP88Q99567 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
NUP88Q99567 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
NUP88Q99567 ACTR6-212ENST00000552376 1659 ntTSL 5 BASIC3.75□□□□□ -1.81
NUP88Q99567 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC3.74□□□□□ -1.81
NUP88Q99567 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC3.74□□□□□ -1.81
NUP88Q99567 AC121333.1-201ENST00000567488 2709 ntBASIC3.74□□□□□ -1.81
NUP88Q99567 AL122016.1-201ENST00000403365 367 ntBASIC3.74□□□□□ -1.81
NUP88Q99567 RNU6-607P-201ENST00000411283 108 ntBASIC3.74□□□□□ -1.81
NUP88Q99567 NDUFB4P5-201ENST00000415445 361 ntBASIC3.74□□□□□ -1.81
NUP88Q99567 AC007390.1-201ENST00000415722 356 ntBASIC3.74□□□□□ -1.81
NUP88Q99567 RPL7P10-201ENST00000417407 739 ntBASIC3.74□□□□□ -1.81
NUP88Q99567 AL445989.1-202ENST00000418943 776 ntTSL 2 BASIC3.74□□□□□ -1.81
NUP88Q99567 SETP5-201ENST00000437270 562 ntBASIC3.74□□□□□ -1.81
NUP88Q99567 MTND4LP16-201ENST00000440828 295 ntBASIC3.74□□□□□ -1.81
NUP88Q99567 USP9YP8-201ENST00000441913 500 ntBASIC3.74□□□□□ -1.81
NUP88Q99567 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC3.74□□□□□ -1.81
NUP88Q99567 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC3.74□□□□□ -1.81
NUP88Q99567 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC3.74□□□□□ -1.81
NUP88Q99567 RNU7-170P-201ENST00000459303 61 ntBASIC3.74□□□□□ -1.81
NUP88Q99567 RNU6-1183P-201ENST00000517054 60 ntBASIC3.74□□□□□ -1.81
NUP88Q99567 RN7SKP256-201ENST00000517201 314 ntBASIC3.74□□□□□ -1.81
NUP88Q99567 CYCSP27-201ENST00000527643 293 ntBASIC3.74□□□□□ -1.81
NUP88Q99567 AP000889.1-201ENST00000530968 660 ntBASIC3.74□□□□□ -1.81
NUP88Q99567 AP001318.2-201ENST00000533378 492 ntTSL 3 BASIC3.74□□□□□ -1.81
NUP88Q99567 AC087241.2-201ENST00000535801 324 ntBASIC3.74□□□□□ -1.81
NUP88Q99567 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC3.74□□□□□ -1.81
NUP88Q99567 AL391261.3-201ENST00000557194 520 ntBASIC3.74□□□□□ -1.81
NUP88Q99567 MTCO3P23-201ENST00000561363 289 ntBASIC3.74□□□□□ -1.81
NUP88Q99567 LRRC37A5P-203ENST00000580181 585 ntBASIC3.74□□□□□ -1.81
NUP88Q99567 UBE2V2P2-201ENST00000587677 504 ntBASIC3.74□□□□□ -1.81
NUP88Q99567 AC009271.1-202ENST00000588803 492 ntTSL 3 BASIC3.74□□□□□ -1.81
NUP88Q99567 AL645944.1-201ENST00000603857 493 ntBASIC3.74□□□□□ -1.81
NUP88Q99567 AL161629.2-201ENST00000615347 275 ntBASIC3.74□□□□□ -1.81
NUP88Q99567 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC3.74□□□□□ -1.81
NUP88Q99567 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC3.74□□□□□ -1.81
NUP88Q99567 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
NUP88Q99567 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
NUP88Q99567 SRP72P2-201ENST00000344851 1979 ntBASIC3.74□□□□□ -1.81
NUP88Q99567 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
NUP88Q99567 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC3.74□□□□□ -1.81
NUP88Q99567 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC3.73□□□□□ -1.81
NUP88Q99567 CYYR1-AS1-201ENST00000357401 3412 ntTSL 2 BASIC3.73□□□□□ -1.81
NUP88Q99567 AC017071.1-201ENST00000564407 2204 ntBASIC3.73□□□□□ -1.81
NUP88Q99567 RNU6-778P-201ENST00000363269 103 ntBASIC3.73□□□□□ -1.81
NUP88Q99567 SNORD14B-201ENST00000364533 90 ntBASIC3.73□□□□□ -1.81
NUP88Q99567 Y_RNA.324-201ENST00000365165 102 ntBASIC3.73□□□□□ -1.81
NUP88Q99567 Y_RNA.414-201ENST00000384011 101 ntBASIC3.73□□□□□ -1.81
NUP88Q99567 RNU6-1013P-201ENST00000384180 107 ntBASIC3.73□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 147.7 ms