Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 AC012433.1-201ENST00000588916 398 ntBASIC3.82□□□□□ -1.8
CHFRQ96EP1 ZNF616-203ENST00000597013 577 ntTSL 4 BASIC3.82□□□□□ -1.8
CHFRQ96EP1 AL355812.1-201ENST00000603215 216 ntBASIC3.82□□□□□ -1.8
CHFRQ96EP1 AC009779.6-201ENST00000603972 165 ntBASIC3.82□□□□□ -1.8
CHFRQ96EP1 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
CHFRQ96EP1 ZNF322-205ENST00000471278 2675 ntAPPRIS P1 TSL 5 BASIC3.82□□□□□ -1.8
CHFRQ96EP1 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC3.82□□□□□ -1.8
CHFRQ96EP1 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
CHFRQ96EP1 BDP1P-201ENST00000582658 1990 ntBASIC3.82□□□□□ -1.8
CHFRQ96EP1 ZNF72P-201ENST00000425869 1908 ntBASIC3.82□□□□□ -1.8
CHFRQ96EP1 ZNF99-201ENST00000397104 3114 ntAPPRIS P1 TSL 5 BASIC3.81□□□□□ -1.8
CHFRQ96EP1 PRB2-201ENST00000389362 1429 ntAPPRIS P2 TSL 5 BASIC3.81□□□□□ -1.8
CHFRQ96EP1 OR6A2-202ENST00000641196 4295 ntAPPRIS P1 BASIC3.81□□□□□ -1.8
CHFRQ96EP1 HSP90AA4P-202ENST00000506915 2228 ntBASIC3.81□□□□□ -1.8
CHFRQ96EP1 SNORD9-201ENST00000362566 104 ntBASIC3.81□□□□□ -1.8
CHFRQ96EP1 RNU6-1287P-201ENST00000362914 107 ntBASIC3.81□□□□□ -1.8
CHFRQ96EP1 RNU6-1159P-201ENST00000362933 107 ntBASIC3.81□□□□□ -1.8
CHFRQ96EP1 RNU6-886P-201ENST00000384319 105 ntBASIC3.81□□□□□ -1.8
CHFRQ96EP1 RNU1-89P-201ENST00000384592 164 ntBASIC3.81□□□□□ -1.8
CHFRQ96EP1 RNU6-306P-201ENST00000384617 107 ntBASIC3.81□□□□□ -1.8
CHFRQ96EP1 Y_RNA.539-201ENST00000384635 107 ntBASIC3.81□□□□□ -1.8
CHFRQ96EP1 RNU6-1060P-201ENST00000384664 107 ntBASIC3.81□□□□□ -1.8
CHFRQ96EP1 RNU6-95P-201ENST00000384697 107 ntBASIC3.81□□□□□ -1.8
CHFRQ96EP1 RNU4-46P-201ENST00000410818 138 ntBASIC3.81□□□□□ -1.8
CHFRQ96EP1 Z99755.1-201ENST00000414048 380 ntBASIC3.81□□□□□ -1.8
CHFRQ96EP1 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC3.81□□□□□ -1.8
CHFRQ96EP1 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC3.81□□□□□ -1.8
CHFRQ96EP1 ARF4P2-201ENST00000430209 526 ntBASIC3.81□□□□□ -1.8
CHFRQ96EP1 HMGN2P20-201ENST00000437531 273 ntBASIC3.81□□□□□ -1.8
CHFRQ96EP1 AL356535.1-201ENST00000440335 398 ntBASIC3.81□□□□□ -1.8
CHFRQ96EP1 AC108059.3-201ENST00000456388 214 ntBASIC3.81□□□□□ -1.8
CHFRQ96EP1 MED28P2-201ENST00000475771 317 ntBASIC3.81□□□□□ -1.8
CHFRQ96EP1 Y_RNA.700-201ENST00000516806 100 ntBASIC3.81□□□□□ -1.8
CHFRQ96EP1 RNU6-255P-201ENST00000516957 105 ntBASIC3.81□□□□□ -1.8
CHFRQ96EP1 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC3.81□□□□□ -1.8
CHFRQ96EP1 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC3.81□□□□□ -1.8
CHFRQ96EP1 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC3.81□□□□□ -1.8
CHFRQ96EP1 AC092470.1-201ENST00000546187 132 ntBASIC3.81□□□□□ -1.8
CHFRQ96EP1 AC023034.1-202ENST00000558153 684 ntTSL 3 BASIC3.81□□□□□ -1.8
CHFRQ96EP1 AC130289.1-201ENST00000577321 73 ntBASIC3.81□□□□□ -1.8
CHFRQ96EP1 MIR5047-201ENST00000579212 100 ntBASIC3.81□□□□□ -1.8
CHFRQ96EP1 AC104534.1-201ENST00000594558 566 ntTSL 4 BASIC3.81□□□□□ -1.8
CHFRQ96EP1 AC104763.2-201ENST00000604179 382 ntBASIC3.81□□□□□ -1.8
CHFRQ96EP1 RAC1P9-201ENST00000604990 392 ntBASIC3.81□□□□□ -1.8
CHFRQ96EP1 AC004792.1-201ENST00000614523 137 ntBASIC3.81□□□□□ -1.8
CHFRQ96EP1 AL596245.1-201ENST00000618994 362 ntBASIC3.81□□□□□ -1.8
CHFRQ96EP1 BTG3-AS1-201ENST00000626994 552 ntTSL 4 BASIC3.81□□□□□ -1.8
CHFRQ96EP1 CYP3A51P-201ENST00000633513 256 ntBASIC3.81□□□□□ -1.8
CHFRQ96EP1 MIR4272-201ENST00000635924 64 ntBASIC3.81□□□□□ -1.8
CHFRQ96EP1 ZBTB37-201ENST00000367701 19128 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
CHFRQ96EP1 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC3.81□□□□□ -1.8
CHFRQ96EP1 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
CHFRQ96EP1 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC3.81□□□□□ -1.8
CHFRQ96EP1 TMEM67-202ENST00000409623 3255 ntTSL 2 BASIC3.81□□□□□ -1.8
CHFRQ96EP1 FKTN-204ENST00000448551 1700 ntTSL 2 BASIC3.81□□□□□ -1.8
CHFRQ96EP1 CCNH-206ENST00000508855 2391 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
CHFRQ96EP1 AL359854.1-201ENST00000614203 1594 ntBASIC3.8□□□□□ -1.8
CHFRQ96EP1 CRB1-201ENST00000367397 9023 ntTSL 2 BASIC3.8□□□□□ -1.8
CHFRQ96EP1 SCFD1-207ENST00000544052 2058 ntTSL 2 BASIC3.8□□□□□ -1.8
CHFRQ96EP1 AC027287.1-201ENST00000553115 1453 ntBASIC3.8□□□□□ -1.8
CHFRQ96EP1 UBE3A-202ENST00000397954 2873 ntTSL 5 BASIC3.8□□□□□ -1.8
CHFRQ96EP1 MUC19-205ENST00000454784 24775 ntTSL 5 BASIC3.8□□□□□ -1.8
CHFRQ96EP1 RNA5SP322-201ENST00000363617 119 ntBASIC3.8□□□□□ -1.8
CHFRQ96EP1 RNU6-338P-201ENST00000383888 105 ntBASIC3.8□□□□□ -1.8
CHFRQ96EP1 RNU6-662P-201ENST00000384253 104 ntBASIC3.8□□□□□ -1.8
CHFRQ96EP1 RNU6-842P-201ENST00000384269 107 ntBASIC3.8□□□□□ -1.8
CHFRQ96EP1 Y_RNA.478-201ENST00000384358 107 ntBASIC3.8□□□□□ -1.8
CHFRQ96EP1 SNORA41-201ENST00000384675 132 ntBASIC3.8□□□□□ -1.8
CHFRQ96EP1 AL024474.1-201ENST00000404655 591 ntBASIC3.8□□□□□ -1.8
CHFRQ96EP1 RPL21P109-201ENST00000422213 475 ntBASIC3.8□□□□□ -1.8
CHFRQ96EP1 AC097713.2-201ENST00000430199 356 ntBASIC3.8□□□□□ -1.8
CHFRQ96EP1 AC073063.1-201ENST00000434352 607 ntBASIC3.8□□□□□ -1.8
CHFRQ96EP1 UBE2V1P13-201ENST00000436983 439 ntBASIC3.8□□□□□ -1.8
CHFRQ96EP1 AC099799.1-201ENST00000439809 192 ntBASIC3.8□□□□□ -1.8
CHFRQ96EP1 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC3.8□□□□□ -1.8
CHFRQ96EP1 PCMTD1P1-201ENST00000455560 355 ntBASIC3.8□□□□□ -1.8
CHFRQ96EP1 snoU13.24-201ENST00000458998 104 ntBASIC3.8□□□□□ -1.8
CHFRQ96EP1 AP001992.1-205ENST00000462248 379 ntBASIC3.8□□□□□ -1.8
CHFRQ96EP1 AC117503.1-201ENST00000472241 394 ntBASIC3.8□□□□□ -1.8
CHFRQ96EP1 AC105758.1-201ENST00000506038 399 ntBASIC3.8□□□□□ -1.8
CHFRQ96EP1 AC104057.1-201ENST00000515547 497 ntBASIC3.8□□□□□ -1.8
CHFRQ96EP1 RNU6-1332P-201ENST00000516666 104 ntBASIC3.8□□□□□ -1.8
CHFRQ96EP1 AC024224.1-201ENST00000538284 609 ntBASIC3.8□□□□□ -1.8
CHFRQ96EP1 IGKV2OR2-8-201ENST00000558710 300 ntBASIC3.8□□□□□ -1.8
CHFRQ96EP1 AC090877.1-201ENST00000561418 344 ntBASIC3.8□□□□□ -1.8
CHFRQ96EP1 COX6CP3-201ENST00000580869 223 ntBASIC3.8□□□□□ -1.8
CHFRQ96EP1 AC104564.2-201ENST00000581240 270 ntTSL 3 BASIC3.8□□□□□ -1.8
CHFRQ96EP1 MIR5188-201ENST00000583467 113 ntBASIC3.8□□□□□ -1.8
CHFRQ96EP1 AL136313.1-201ENST00000624804 202 ntBASIC3.8□□□□□ -1.8
CHFRQ96EP1 AC132825.6-201ENST00000638861 357 ntBASIC3.8□□□□□ -1.8
CHFRQ96EP1 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
CHFRQ96EP1 AC004925.1-201ENST00000624256 2706 ntBASIC3.8□□□□□ -1.8
CHFRQ96EP1 ZNF99-202ENST00000596209 7817 ntTSL 5 BASIC3.8□□□□□ -1.8
CHFRQ96EP1 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
CHFRQ96EP1 LLPH-201ENST00000266604 7746 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
CHFRQ96EP1 OR2L3-201ENST00000359959 2792 ntAPPRIS P1 BASIC3.8□□□□□ -1.8
CHFRQ96EP1 FASTKD1-205ENST00000453929 2791 ntTSL 2 BASIC3.8□□□□□ -1.8
CHFRQ96EP1 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC3.79□□□□□ -1.8
CHFRQ96EP1 KYNU-202ENST00000375773 1772 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
CHFRQ96EP1 GPR18-203ENST00000397473 1660 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 85.6 ms