Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 RNU6-500P-201ENST00000362349 107 ntBASIC2.39□□□□□ -2.03
HDDC3Q8N4P3 RNA5SP99-201ENST00000364020 114 ntBASIC2.39□□□□□ -2.03
HDDC3Q8N4P3 RNA5SP240-201ENST00000365355 128 ntBASIC2.39□□□□□ -2.03
HDDC3Q8N4P3 MIR518D-201ENST00000385014 87 ntBASIC2.39□□□□□ -2.03
HDDC3Q8N4P3 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC2.39□□□□□ -2.03
HDDC3Q8N4P3 BTF3P7-201ENST00000407097 488 ntBASIC2.39□□□□□ -2.03
HDDC3Q8N4P3 RNA5SP270-201ENST00000411361 118 ntBASIC2.39□□□□□ -2.03
HDDC3Q8N4P3 HIGD1AP15-201ENST00000416198 280 ntBASIC2.39□□□□□ -2.03
HDDC3Q8N4P3 SLC44A3-AS1-205ENST00000424505 612 ntBASIC2.39□□□□□ -2.03
HDDC3Q8N4P3 LINC01673-201ENST00000426418 468 ntTSL 3 BASIC2.39□□□□□ -2.03
HDDC3Q8N4P3 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC2.39□□□□□ -2.03
HDDC3Q8N4P3 AL512286.1-201ENST00000439244 400 ntBASIC2.39□□□□□ -2.03
HDDC3Q8N4P3 CYP2C59P-201ENST00000457790 269 ntBASIC2.39□□□□□ -2.03
HDDC3Q8N4P3 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC2.39□□□□□ -2.03
HDDC3Q8N4P3 APELA-204ENST00000515275 551 ntAPPRIS P1 TSL 3 BASIC2.39□□□□□ -2.03
HDDC3Q8N4P3 RNA5SP458-201ENST00000516188 119 ntBASIC2.39□□□□□ -2.03
HDDC3Q8N4P3 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC2.39□□□□□ -2.03
HDDC3Q8N4P3 AC079598.5-201ENST00000547460 117 ntBASIC2.39□□□□□ -2.03
HDDC3Q8N4P3 AC123905.1-201ENST00000552098 541 ntTSL 4 BASIC2.39□□□□□ -2.03
HDDC3Q8N4P3 AC012404.2-201ENST00000558572 481 ntTSL 3 BASIC2.39□□□□□ -2.03
HDDC3Q8N4P3 AC008751.2-201ENST00000597885 980 ntBASIC2.39□□□□□ -2.03
HDDC3Q8N4P3 AC011890.2-201ENST00000613393 294 ntBASIC2.39□□□□□ -2.03
HDDC3Q8N4P3 AL161423.1-201ENST00000613700 262 ntBASIC2.39□□□□□ -2.03
HDDC3Q8N4P3 AL359547.2-201ENST00000615810 418 ntBASIC2.39□□□□□ -2.03
HDDC3Q8N4P3 AC012640.5-201ENST00000623897 319 ntBASIC2.39□□□□□ -2.03
HDDC3Q8N4P3 ATM-228ENST00000639240 498 ntTSL 5 BASIC2.39□□□□□ -2.03
HDDC3Q8N4P3 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.39□□□□□ -2.03
HDDC3Q8N4P3 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.39□□□□□ -2.03
HDDC3Q8N4P3 MDM2-207ENST00000360430 891 ntTSL 1 (best) BASIC2.38□□□□□ -2.03
HDDC3Q8N4P3 SNORA41-201ENST00000384675 132 ntBASIC2.38□□□□□ -2.03
HDDC3Q8N4P3 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC2.38□□□□□ -2.03
HDDC3Q8N4P3 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC2.38□□□□□ -2.03
HDDC3Q8N4P3 AF274854.1-201ENST00000413236 615 ntBASIC2.38□□□□□ -2.03
HDDC3Q8N4P3 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC2.38□□□□□ -2.03
HDDC3Q8N4P3 LINC00392-201ENST00000430033 557 ntTSL 3 BASIC2.38□□□□□ -2.03
HDDC3Q8N4P3 AC023590.1-204ENST00000434023 431 ntTSL 5 BASIC2.38□□□□□ -2.03
HDDC3Q8N4P3 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC2.38□□□□□ -2.03
HDDC3Q8N4P3 RPS12P2-201ENST00000439728 269 ntBASIC2.38□□□□□ -2.03
HDDC3Q8N4P3 AL583843.1-201ENST00000456070 346 ntBASIC2.38□□□□□ -2.03
HDDC3Q8N4P3 AC010587.1-201ENST00000505809 469 ntBASIC2.38□□□□□ -2.03
HDDC3Q8N4P3 AC097478.1-204ENST00000509723 547 ntTSL 3 BASIC2.38□□□□□ -2.03
HDDC3Q8N4P3 AC093206.1-201ENST00000515364 497 ntTSL 3 BASIC2.38□□□□□ -2.03
HDDC3Q8N4P3 RNU6-415P-201ENST00000516252 97 ntBASIC2.38□□□□□ -2.03
HDDC3Q8N4P3 AC023866.1-201ENST00000518064 579 ntTSL 4 BASIC2.38□□□□□ -2.03
HDDC3Q8N4P3 AC093012.1-203ENST00000548437 450 ntTSL 2 BASIC2.38□□□□□ -2.03
HDDC3Q8N4P3 MYL12BP1-201ENST00000569826 507 ntBASIC2.38□□□□□ -2.03
HDDC3Q8N4P3 AC022022.2-201ENST00000602989 360 ntBASIC2.38□□□□□ -2.03
HDDC3Q8N4P3 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC2.38□□□□□ -2.03
HDDC3Q8N4P3 AP002360.4-201ENST00000606980 481 ntBASIC2.38□□□□□ -2.03
HDDC3Q8N4P3 RNU6-91P-201ENST00000607774 107 ntBASIC2.38□□□□□ -2.03
HDDC3Q8N4P3 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC2.38□□□□□ -2.03
HDDC3Q8N4P3 AC009233.1-201ENST00000616477 371 ntBASIC2.38□□□□□ -2.03
HDDC3Q8N4P3 AL391262.2-201ENST00000622466 494 ntBASIC2.38□□□□□ -2.03
HDDC3Q8N4P3 AC017037.3-201ENST00000625016 472 ntBASIC2.38□□□□□ -2.03
HDDC3Q8N4P3 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC2.37□□□□□ -2.03
HDDC3Q8N4P3 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC2.37□□□□□ -2.03
HDDC3Q8N4P3 AC016717.2-201ENST00000609089 5141 ntBASIC2.37□□□□□ -2.03
HDDC3Q8N4P3 5S_rRNA.2-201ENST00000391293 112 ntBASIC2.37□□□□□ -2.03
HDDC3Q8N4P3 SNORD23.1-201ENST00000408212 104 ntBASIC2.37□□□□□ -2.03
HDDC3Q8N4P3 Y_RNA.608-201ENST00000410647 95 ntBASIC2.37□□□□□ -2.03
HDDC3Q8N4P3 AL592435.1-201ENST00000416401 469 ntTSL 3 BASIC2.37□□□□□ -2.03
HDDC3Q8N4P3 RPL7P34-201ENST00000433316 712 ntBASIC2.37□□□□□ -2.03
HDDC3Q8N4P3 AL603825.1-201ENST00000438481 80 ntBASIC2.37□□□□□ -2.03
HDDC3Q8N4P3 ZNF114P1-201ENST00000453500 292 ntBASIC2.37□□□□□ -2.03
HDDC3Q8N4P3 LINC00709-201ENST00000458168 494 ntTSL 2 BASIC2.37□□□□□ -2.03
HDDC3Q8N4P3 RPL23AP42-201ENST00000471152 471 ntBASIC2.37□□□□□ -2.03
HDDC3Q8N4P3 AP000797.1-201ENST00000478870 387 ntBASIC2.37□□□□□ -2.03
HDDC3Q8N4P3 RPL23AP49-201ENST00000492925 468 ntBASIC2.37□□□□□ -2.03
HDDC3Q8N4P3 AC093730.1-201ENST00000508825 448 ntTSL 3 BASIC2.37□□□□□ -2.03
HDDC3Q8N4P3 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC2.37□□□□□ -2.03
HDDC3Q8N4P3 RNU6-991P-201ENST00000516168 107 ntBASIC2.37□□□□□ -2.03
HDDC3Q8N4P3 RN7SKP265-201ENST00000516448 223 ntBASIC2.37□□□□□ -2.03
HDDC3Q8N4P3 AP003122.4-201ENST00000530980 758 ntBASIC2.37□□□□□ -2.03
HDDC3Q8N4P3 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC2.37□□□□□ -2.03
HDDC3Q8N4P3 AC087318.1-201ENST00000536786 389 ntTSL 3 BASIC2.37□□□□□ -2.03
HDDC3Q8N4P3 AC136188.1-201ENST00000546770 342 ntTSL 3 BASIC2.37□□□□□ -2.03
HDDC3Q8N4P3 MIR5697-201ENST00000578045 78 ntBASIC2.37□□□□□ -2.03
HDDC3Q8N4P3 AC087045.1-201ENST00000605856 382 ntBASIC2.37□□□□□ -2.03
HDDC3Q8N4P3 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC2.37□□□□□ -2.03
HDDC3Q8N4P3 AL031775.1-201ENST00000607014 887 ntBASIC2.37□□□□□ -2.03
HDDC3Q8N4P3 AC096772.1-201ENST00000609146 564 ntBASIC2.37□□□□□ -2.03
HDDC3Q8N4P3 MIR6895-201ENST00000613497 78 ntBASIC2.37□□□□□ -2.03
HDDC3Q8N4P3 AC104010.1-201ENST00000616889 150 ntBASIC2.37□□□□□ -2.03
HDDC3Q8N4P3 ZNF117-203ENST00000610793 1374 ntTSL 2 BASIC2.36□□□□□ -2.03
HDDC3Q8N4P3 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC2.36□□□□□ -2.03
HDDC3Q8N4P3 RNU1-148P-201ENST00000384472 162 ntBASIC2.36□□□□□ -2.03
HDDC3Q8N4P3 FTH1P15-201ENST00000406984 280 ntBASIC2.36□□□□□ -2.03
HDDC3Q8N4P3 RNU6ATAC15P-201ENST00000408279 121 ntBASIC2.36□□□□□ -2.03
HDDC3Q8N4P3 AC138623.1-201ENST00000418060 216 ntBASIC2.36□□□□□ -2.03
HDDC3Q8N4P3 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC2.36□□□□□ -2.03
HDDC3Q8N4P3 ELOCP4-201ENST00000420090 333 ntBASIC2.36□□□□□ -2.03
HDDC3Q8N4P3 AL593851.1-201ENST00000426171 157 ntBASIC2.36□□□□□ -2.03
HDDC3Q8N4P3 MTND5P2-201ENST00000442927 1142 ntBASIC2.36□□□□□ -2.03
HDDC3Q8N4P3 AL591719.1-201ENST00000444669 744 ntBASIC2.36□□□□□ -2.03
HDDC3Q8N4P3 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC2.36□□□□□ -2.03
HDDC3Q8N4P3 AL160287.1-201ENST00000455612 432 ntTSL 3 BASIC2.36□□□□□ -2.03
HDDC3Q8N4P3 MTCO2P29-201ENST00000465212 189 ntBASIC2.36□□□□□ -2.03
HDDC3Q8N4P3 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC2.36□□□□□ -2.03
HDDC3Q8N4P3 AC108727.1-201ENST00000513802 393 ntTSL 2 BASIC2.36□□□□□ -2.03
HDDC3Q8N4P3 RNU5B-3P-201ENST00000516601 115 ntBASIC2.36□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 92.2 ms